Gene detail

Detailed information of SKAU_T00002540 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00002540	4-HYDROXYPHENYLPYRUVATE DIOXYGENASE	CM056376.1	4808114	4820639	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00002540

GGAAGGATTTAGACGGAAAAATGACTACTTACACTGATAAAGGCGAAAAGCATGAACAGGGCAGGTTCGTCTGCTTTGACCATATCACGTTCTGGGTCGGCAATGCCATGCAGACAGCCTCATTCTATTGTAACAAGATGGGATTCGAACCCTTGGCGTACCAGGGCCTGGAGACGGGCTGTCGTGATGTGGTGTCACATGTAGTGAAACAGGGAAAGATCATTTATGTTTTTCAATCCGCGCTCAATCCAGGAAACAAAGAGATGGGAGAACACTTGGTGAAGCATGGCGATGGAGCAAAAGACATTGCATTTACAGTGGAGGACTGTGGCTTCCTTGTTGAGAAAGCCAGACAGCGCGGAGCTGTCATCGTGAAGGAGCCCTACGTGCTGGAAGACAAGTACGGCTCGGTGAAATTAGCTGTCCTTCAGACGTATGGTGACACCACGCACACATTGGTGGAGAGGACAGGGTACAAGGGCCTGTTCCTGCCTGGCTTCAAGGTACCACTCTTCAAGGATCCAATGCTGGCCAAACTGCCAAGTGGGAAACTGAACTTCATTGACCATGTGGTGGGGAACCAGCCAGCCAACGAGATGGTGTCTACAGTGGAGTGGTACCAGAAGAACTTGCTCTTCCACCGGTTCTGGTCAGTGGACGACAAGCAGCTACAGACAGACTTCAGTGCCCTACGCTCCATTGTCGTGGCCAACTATGAGGAGTCGGTGAAGATGCCCATCAATGAACCTGCCATGGGAAAACGCAAATCACAGATCCAGGAATATGTGGAGTACTACGGTGGTCCAGGGGTCCAACACATTGCCATGAACACATCAGACATCATCACAGCTATACGTAACCTGAAGGAGCGTGGAATGGAGTTCATGAATGTGCCAGACGCCTACTACCAACAGCTGAGGGAGAATCTAAAGTTTTCCAAAGTGAAGATCACGGAGAACTTGGACACATTGGAGGAGCTGAGGATATTGGTGGATTATGATGACAATGGATACCTGCTTCAGATATTCACCAAGCCTGTGCAGGACCGTCCCACTGTCTTCCTGGAGGTGATTCAGAGACACAATCACCAGGGTTTTGGAGCTGGGAATTTCAAGTCTCTCTTCGAGGCTATTGAGGCCGACCAGAATGCAAGAGGAAACTTAACGATCCTGACTCCTAACGGTGTCTCAGAAACGCTTTGAATCCGCCAGACGCAGTCCCAGaagctttctctctctcaccaagTATCCCCTGCACAAATCAACCAAATGACCTGAAATTTTGTTCCAAGGACAAGTGGTGCAGAAAGTATCCCTCCTATTAATTCCTTTGCACCAATTCATACATTTTGTTGTCACTTACGGGTTTTCTTACGCTTTGCCGCTTTTCAAATCAACACTTACAATAAGCAAGGGTTGATTTCACTCTGTACACACCAGAGTCAATACGTTTTGTGAAAAATGTAGGATGCAGTGCATCACAAAATATAATTAATGGTTGTTtatgtacaaaaaataaataaatatcattcCACTTATACAGCCACATCTAAATAAATACAGAGAAAGTAATTATAGAAAAAATGTTACAATAAATGTACGTCAATAGCAGTATAATTATAGATTCTGCATTCACATGCAGAAACTGCTATGGAAGAGTAGTATCATCAGACAACAAACTGGATAAATTCCCCAAATTGCTTTATAATGCATCCCCACAGCAATGGATATAAAAGTTTCTTGGGAAAATTGTTAAGACAAGTTGGTAATGCACCAGTGCTTCCCAATAGTTATTCGTTGCATGCTTTTAAAGGCATACTCAAAACAGTCATGCTTATGCTGCATATCAATAGTCAAAATCCAAAAATAAAGCAAATGGTGTCCACTCAATTTTTTTAATGACAACAGGTGTTAATACCAGTTGCAACTATTAATACTGTGGGCAGAATTGTGTCATTGTACTCACAAATCTAATATTATTAAAGCCAGTTATAATTGCATTAAATCTGGCTGATGTAAGCAATTACATCATAGGGCAGTGGTCATTTACAGTTTCTCAATTGTTTAAACGCATTTCCTGAAAATATAGCTCAATTTCTCAAAGCTCTACACACAAACCGAGTAAGAGTTAACTGTTAACATTACTTGACATCCTGCCTCTGATCTTGATTGGGCCAGAGAACCTCGTCAACATCGCATGCGATGTTTTCTCTGCCCAAGCAGCGCGGGAAAAGCACCTTGCATGCCTTATCCAACCCTGGCAGGCGTCTGCATGAGTCTCCACATGCCTCTTCCATCGCCTGGGGCAGGGTCATTCGCTCATGGGGGTTGCGATCATACACCTTCCAGCGCCACTTTGAAAATAATTCTTCAATTGGATTAAGGAAAGGTGAATAGGGGGGTAGAAATACAGAAAAGTGTGGGTGGCCAATGAACCAGTCCTGGACCAGAGCAGCGCAGTGGAAAATTACATTGTCCCAAATGGTAACGTAgttgggctgctctggtccctctTCATGTGGGGTGAGGAGGATGTCCAATCAGAAGGGCAGCGTTGTAGGGTCCAAGATGAGCGGGATGGTGGATGACACCTTGTTGACCAATGGCCATCAACAGTTGCACAGTAGCCAATTATGTTTCTTCCCCGCCGCCTGGTCTTGGTGAGATTGAATCCCGCCTCATCCACGAATACGTACTCCTGCGGGGCCGCATTGGCATCAAGTTCAAGCACTCACTGAAAAAGAAAACGTGACCATGTCAGACAGGCATGCATAGACAAATGCAGAGTGAACAGCAATATATTGATACAGAGTACTGAGAGGATGTGATCAATTACAGTAACCTACTGTACTCACTTGCATATATTGATAGTGCAACTCTTTCACCCTGTCAGAGTTCTGCTCAAATGGAACCCGATACTCGTTTCATCCTGATAAGGTTGCGCTTTAGGACACGGTCAATTGCTGATAAGCTGGCTGTATGTATATTGGGGAATATCATGTGGTCTTCAATGACTCGGTTTTGGATTTCCCGCAGTCTTATAACATTATTGGCTAGCACCATATTTACAATTGCCGTTTCTTGTTCCGCAGTAAAGGTTTGGCCTCTGCCTCCCCTTGGTGGTAGTGTTTCAATTATGTGAaaagttttatatatatacactactcacaaaaagttagggatatttggctttcgggtgaaatttatggaaaatgtaagttcacgctacagtgatattatacgtatcatgaaagtagggcatttaagtagaagcatgcaatggtgatttcctcatctcaaacaatttattgaaacaaaagccaacaacagtggtgggtataccacaacaaaaatgtaaatgtctcaataacttgtcatgtgcccttgagcatcaattacagcttgacaacgacgtctcatgctgttcacaagtcgacttattgtctgctgaggcatggcatcccactcttcttgaagggcggccctcaggtcattgaggttctggggtacagagttacgagcctctacacggtgagtcagctgatcccataggttttctatgggattcaggtctggagaaagtgcaggccactccatttgaggtaccccagtcttcagcagc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00903	Glyoxalase	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004360	Domain	Glyoxalase/fosfomycin resistance/dioxygenase domain	Interproscan
IPR005956	Family	4-hydroxyphenylpyruvate dioxygenase	Interproscan
IPR018146	Conserved_site	Glyoxalase I, conserved site	Interproscan
IPR029068	Homologous_superfamily	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	Interproscan
IPR037523	Domain	Vicinal oxygen chelate (VOC) domain	Interproscan
IPR041735	Domain	4-hydroxyphenylpyruvate dioxygenase, C-terminal	Interproscan
IPR041736	Domain	4-hydroxyphenylpyruvate dioxygenase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11959	4-HYDROXYPHENYLPYRUVATE DIOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000139	Cellular Component	Golgi membrane	Interproscan
GO:0003868	Molecular Function	4-hydroxyphenylpyruvate dioxygenase activity	Interproscan
GO:0004462	Molecular Function	lactoylglutathione lyase activity	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006572	Biological Process	tyrosine catabolic process	Interproscan
GO:0009072	Biological Process	aromatic amino acid metabolic process	Interproscan
GO:0016701	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-