Gene detail

Detailed information of SKAU_T00002330 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00002330	HEPATOCYTE NUCLEAR FACTOR 1	CM056376.1	4424236	4433412	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00002330

CAAACAGGCAAGTTAAATAAACCAATAATAAGAATTATATTACTAATAAAGGAATAAAGCAgttttagtttttggaaagaaaTGTACTTGGCACTTTCTGTCATGAAATAATTgacatttttctttttgcttgctTTTATTGAAACTATTTTTAACTGTTTTTGTATCTGTTATCATCCTGCTAATGTGTTACAAGTGATATTTTAGTCTATATTGTGCAGAAAAAAAGTAAGTTAAAACTCAATGTAACTTATCTTGAGTGATTGAAATGTGGTCAGGTCTATGTTTGCATTGTTCAAAATTTTGTTGTgtctacatgtatgtgtgtgtgtgtgtgtctgtgggtgccaGGGAGGACTCATGGCATGTAGCCAAAATGGTGAAAAGCTATATGCAGCAGCACAACCTGCCGCAGAGAGAGGTGGTGGAGTCCACAGGACTCAACCAGTCCCATCTCTCTCAGCACCTCAACAAAGGCACCCCCATGAAAAACCAGAAGAGGGCAGCACTGTACAGCTGGTACGTCAGGAAGCGAGGAGAAATCAGTCAGCAATTCACCAATGCCAGCCGGGGAATGCTAATGGGGGAGGAATCCTCTTCCAGGCTTACGAGCGACAGAAAAACCCCagcaaggaggagagagaggggctggTGGAGGAATGCAACAGGGCAGAGTGTCTTCAGCGGGGGGGTGTCCCCGTCACAGCTGGCAGGACTGGGCTCTAACCTGGTGACAGAGGTGCGAGTGTACAACTGGTTTGCCAACCGGCGCAAAGAAGAGGCTTTCCGCCACAAGCTGGCTCTGGACACGCCATATAACAGCCAAACAACAACCTCCTCCAACCATGCCTTACACACAAGCCCTTCTCATGGCATGAAATATACCCAGCATGTGACCAATGAGAGCCTGGGATCGGGCCATCATGTGGACAGGAGTGTGGGTGGGCGGTTAGTTGTCAGCCCAGTCCAGTTGGAGCCAAGCCACACCCTTTTGGAGACACATCACAAACCGGTGTCAGGAGGTGGCCCTCTGCCTCCTGTCAGCACGCTGACTGCTCTGCATGGTCTGTCTGCCTCGCCCGCACCTTCTCAGAGCCTCATCATGGCCTCCCTGCCGAGTGTCATGAGCCTCGGGGAGTCCTCGCTTCTTATTGGTCTGGCCTCTTCTCAGCCCCAGACCGTTCCAGTCATTAATAACGTTGGAGGCGGTTTCACAACCCTCCAACCAATCTCCTTTCAACAGCAGCTCCACGCCTCGCACCAACAGCCAATCACGCAGCAGTTCCCAAATCACATGGGACACAGCTCCTTCATGGCAACAATGGCGCAGCTTCCATGCCACATGTACAGCAAATCCGACCTGTCCTACACCCCCTCCAGTCTCCTGTCCCAAGCCATGGTCATCACAGATAGCAGTAGTCTCGGAACACTCACTAGCCTAACTGCAGTCCGACAGATTCTATCAACAGACCCTGAGGACCAGACAGACTCCCCCCTCCAAGAGCCCTCTCTTCACCTGCATACAAGCTCACCTGTGCCAGTTTCTGGGAGTTTGGAACTTTACCCTTCATCGCAGTCCAGCGAGACCCACCCATCACATCTCCTAGCTTCTCCGCCAGCAGACATGGACCCCTACATCCCTACACAGATGGTATCGACTGCACAATAGCCACAGTAGAGCGTGGATCTACTATTACAGAGAATGGGGGCAGGCTATACAGTGTCTATGGCACATTTACTGGAGAAAGAGGCTGAGTGGTATAGGGTGGCAGTAGTGGAGAGATGCTTTGCAGAGAAAGGCATAAGAACCCCTTTTTCCAATAACTACTACCTCCGTTTCAATCAGCCATTTCCCAGAGAGAACCGAATGCCTCGACAAACACGCAAAACCAGAACTAAATCACTGGCAGGAGTCAGACTTCTGATTACGGTCTGTGTCTATACCTCAGTCCCACACTGTTCCACGGTCAGTGAATGTTATGTGAAAAGAATCACTGTAATTCCAGTAAAGAGAAATCTATTGCAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04812	HNF-1B_C	Hepatocyte nuclear factor 1 (HNF-1), beta isoform C terminus	Family	Interproscan
PF04813	HNF-1A_C	Hepatocyte nuclear factor 1 (HNF-1), alpha isoform C terminus	Family	Interproscan
PF04814	HNF-1_N	Hepatocyte nuclear factor 1 (HNF-1), N terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006897	Domain	Hepatocyte nuclear factor 1, beta isoform, C-terminal	Interproscan
IPR006898	Domain	Hepatocyte nuclear factor 1, alpha isoform C-terminal	Interproscan
IPR006899	Domain	Hepatocyte nuclear factor 1, N-terminal	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR039066	Family	Hepatocyte nuclear factor 1	Interproscan
IPR044869	Domain	HNF-1, POU-specific (POUs) atypical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11568	HEPATOCYTE NUCLEAR FACTOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001889	Biological Process	liver development	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030073	Biological Process	insulin secretion	Interproscan
GO:0031016	Biological Process	pancreas development	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-