Gene detail

Detailed information of SKAU_T00002180 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00002180	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	CM056376.1	4235932	4278959	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00002180

atgGGGACCGAGGAGAAGTGGCAGGCCGATGCGGGCCCGACGGCGGGGGAGAAGAGCAAGGAGGCCGGAGCCCAAGAAGGGAAGGGCGACGGGAGCAAGGGCGACGGGGGCAAGGGGGACGGGGGCAAGGGGGACGGGAGCAAGGGGGACCGGCACACCTGCTGCGGCTGCCGCTTCCCGCTGCTGGTAGCCCTACTGCAGCTGCTCCTGGGCATCGCTGTAGCGTCGCTGGCGTTCATCATGAACAGCATCAGCCCCTCCCTGCTGGCCAGGGAAACCCCACACTGGGCCGGGATCATCGTCTGCCTTGTGTCCCTGCTGGGGTTTGTCCTGTACTGCATCACGTACCTTCCAGACGAGAAGACGTCCATGCAGTTCGTTGCCAAGCTCCTGTACTTCCTGCTCAGCACCCTCGCGCTGGTCTTGTCAGTTCTGGCGCTGGCCTTCGCCGGCTACCACTACGCCCAGGTGGACGGCTTCACCTGCAGCAAGGAAGGGAGCGACTGCCGCACGCTCAAGCTTTACTTCCTCCTCCAGGTGGTGCTCAACCTGGCCCAGGCCCTGGTGTGCCTGGTGGCCGCCTTCATCATGTGGAAGCACAGGTACCAGGTGTTCTTTGTGGGCCTGCAGAGAACCAGGCCTGCTGCGACGCTGTTGGAGGAATATGGGTTTAAAGGCGAGAGGATAAATAAACagAGCAGGTCTCAGGGCCTcgggggggtcaaaggtcagaagaGAACAATTGACTCTGATCTAAAAGAGACAGCCCGTCCCCCCCTTCCCAGTCGGCCAAACCCCCGCCCCTCACTCCGCTCTCCCTGCTTTCTCACACTGCACACTCGGGAACAGAGACACGGAATGGACACGGAAGGGAGCCAGAGCAGCCTGTCCTCCGCGGACTCCCCTCACGATCCCTGCAAAATGTTCATCGGCGGTTTGAGCTGGCAGACGACACAAGAAGGTCTAAAGGAGTACTTTAGTAAATTCGGCGAGGTGAAGGAGTGTATGGTGATGCGGGATCCGGTTACAAAGCGGTCGAGGGGCTTCGGATTTGTCACTTACGTAGACCAGGCTGGCGTGGATAAAGTTTTGGCTCAACCCAGACATGAATTGGATTCTAAAACTATTGACCCAAAAGTGGCATTCCCTCGCAGAGCTCAGCCGAAGTTGGTGACTCGCACCAAGAAGATCTTTGTCGGGGGCTTGTCAGTCAACACGACCATTGAAGATGTGAAGCAGTATTTCGACCAGTTTGGAAAGGTAGGAATTCCATTTAGAGAGGACCCCTCTCCTgacatcacccccacccccctgagATCACAGGTCGGTCCCCTCCACTGGGGTTTACAAGCAGCATGCGCCATTCCTCTGACGGCGTACGGACCAATGGCGGCGGGGGCGGCGGCGGCAGCGGCGGTGGTTAGAGGTTCCACCCCTTCTCGCTCAGCTGGATTTCTGGGTACTAGCAGCCCTGGGCCAATGGCAGACCTTTATGGTGCAGCAAATCAGGACACTGGAGTCAGCAGTTACATCAGTGCTGCAAGTCCTGCCCCCAGCACTGGATTCGGTCACAGTCTTGGGCCTTCACTAATGGCTACCACTGAGAAGGCAGTCAGATCAGAAGATGGGAGGGGTCAACTGTACTTTGAGCCAATCAGATCTATTTTTCTGCTGAATGTCGCTGTCTAGCAAACCCCATTGGCTGCTGCAGCTCTAACTTGACCCTGGCTCCTCTTGACTCCACCAACCCACTGAAGATCTTTtaatttcctgtttcctgtactaaCATCACTTCTTGTCTTCCCTCATGCCTGTTACTACCTTCATGTAGACctcttaaaatagttttttttaggaAGTTTGTCTGGGGTTTCCTACAGTTGGAGAGCTTCGTTCAGGcaaacaaaaaatataaaaatcaaaAAAAAGTTTGATTGTAGAAATCATTCGGAGGAATCTAgctccttctgttttgttttatttacttGACTGTTCTTGaggaattttaatttaatttaatttttttgtttggtCGTCTTTGTTACTTTGGGTTACACTTTTGTCAGAAATTGAAACCATCATCATGGtgttacagagagagggagagagcaagaaaaCTGTTTGAGAAAAGATTAACATGTTTCTCTAGTCACAAATGAGGTACATGGACGGGAGCAATGATTGGTTTGTGTGCATGGATGTTTGTGTCTCAGTGTTAGGTTCTTAATTAATTTTAAGAAAACACAGAATAATTCTAATTGAACACTTTTTTTACAAAAAGACAAATGGAAAGATGTATATTTTGGTAGTTTTGAAGCAAAAAAAGAACATttgtaatattaataataataatagtaataatcataATCAAGAACCTATTTTCCATAATTGGTTTTAAAACAATGTTTTGTTTCTTCCtgtaatatattgtaaatatagctCAGTCTTTATggggattttctttttttcttttgctgtaATGGGGAAGGGGCAATTTGTGGGTGGGGGACATTTATATTTCCTGGAAAATGATTGTAAAGTTGCATAAATCACCTTGAGTGTTGACTACCTGAAGTGTTTAAATATCAGTGTCACAGGGGTGAAGGAAAAAAGATCGCGTCACTCCAGATTTTATCACCTGTAGGTTCTTCTTCACGGCCATCAATCCGGAAATAAACATTGTACTCGCTCAGGTCAGAACGACACAAAGCTCAATAAGGAGCCTTTACCTTGCTTGTTTTTGTGTAATCGGTAACAAATTACATGAAACAAGGATCTCCTGCTGGTAAAATCTGATGTGAATCTCTACAGTGGGAGATGTGATTTATTCCCTGctgttgaatttttttttctccttaatGAGGACATATGTGGTGTTGAGCTGCTTTATACAGCATTCTTGTAGGGGACAAGTGGTTTCCCCAAGCAGTCTTCTGGCTGTTTTTTATACTAGTTTGCCCATTAGAAAtttaaatcagtgatttgtaacaCCCTTAAACTTTTTCTCTCAATGGCACGGGAAGGTCGCCACTACTGTATTGAGGGAATGGGGTTAGTGAAATCTAGAACTAGTCTCCTGCAGTTAATGGTTCTGATAGGGGGGGGAAAGTGGAAATATGCTACTGTAAATGTCAATATAAGACCTGGTCGAGTCCTCAGTGTTGGTGCTGCAGCGTATAAACCTATATCACCAGAGTACAGTGGGGATTTTTCTGACTacgaattgccccccccccccccagtttttaGGGGAAAATCGATGGAGAACTTGAGGTGTTTCATGCAATTGGGGCCGAAGGATTAAGTGTGGGTGGGATCTTAATGTTCTTCTTGcatcttgcaaaaaaaaaaaaaaaatgtttgtggcatCATTATgctaggttttctttttttaaatagttgCTGTTTAAATGCCGTTCCATTTAATTATCTCTGACTTTAAAAATGAAGGACACATTTTACAAAAGCAAGGGATTCTCGAGGTTGTTTCATCACGGGTTTTATTCTTCCTCTTCAGATTTTATTAGGCaaaaaagtgtgtttgtgtgtgtgtgccctcgtgtgcgtgcgcgtgtgtgtgtgtgtccgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcatatacgAGTGCTTCTGTAGACTGGAATCTTGGTTATGGTAGGCAAATGGGTTGTAGATCATTTATGTGAATTTCTGATTCCATCTTGATCTGTCGTTGAAGCTCTCTTTCTGTACAATGGGATAGAGGCCGATAAGCTACAtaggaaattggggggggggggggggggggaatgcatTTATAGCCTGTGTTTAGCTCAACATTGTTGTACATGTTTTACATTGACTGCGCTGGTGCAGAAACATTTGGTCCTCTGTGGGCATCGTCCCTTATCTCTTCACCCAACATCTGCATTTATTAATGCCTTAACATATACTGGGGATAACTGCCCCACAACACTCTGCTACAACTGGTCTTCCATTATTTTACATGACTATCTATTACCCCCACAGCCTGTTCTTGTCTCATGCTCCCATAATCACAATGCTGAATGCCCACCTGCACTGTCCAAGACTCAACCAAACTACTGCACGACACAAACACTGTAGCTAtttaacagacaaaaaaaaaaaaagaagcaatattttatattttctttcttataATTATGACGATAATGGTGATGAGATTTGAAGATGATTATGTGGCATTCAAAATACTTTTTAATTTTTAAGACTATTATATTAACATGAAATTATTCCTGACTGATGAGCAGTTTTTGAATCATTTTCAAaacgtacttttttttttgtgactgttttgttgttttttttgggtggggtggGT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF04103	CD20	CD20-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR007237	Family	CD20-like family	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005844	Cellular Component	obsolete polysome	Interproscan
GO:0006417	Biological Process	regulation of translation	Interproscan
GO:0007417	Biological Process	central nervous system development	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-