Gene detail

Detailed information of SKAU_T00001870 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00001870	APOPTOSIS-INDUCING FACTOR 1	CM056376.1	3329440	3371936	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00001870

Transcript

SKAU_T00001870

ATGAACGGGGTTCCGGTGGGCCCAACTGAGCGGCGGAACAAGCGGATTCCCTCGCTCCCACCTCCTCACAGGGCACGGCTGTCCACCACAACTTCAGTCTTTACATACCCCAGGATATCACTCGTCTCTTTCCTTCCTGAGTCTAAAAAGCCCCTGCAGtggcgagcgagcgagcgggaCTCTGAAGAAGGTAGTGGAGAGAGAGACGCAAACTGCCTGCAGTTTCTCTGCAGTGCGAGCAGGGCTGGCTGCACAGTCGCTTTGAGCAGGCAGTCTGGAAAGCTTGACTGGATCTCGGTGTACCTGCTCCTAATAGGCACTGGCAATGAGCAGCAGCTGATGTCTGCGATGGCCGGCCTGGACTTGCAGACCTGGATACCACCCCGACAGCGCTACTGTTGCCTAATGTCTCCAGGGCTTCCTTCAGCAGCCTCCTGGCGCTACTCTGGGCCCATCATGGGAGGATGCCTCTCCAAACCCAAACCAGTGGAGGTTAAAGTAGAACTCTCGCTGCTCGAGAAAGAGAAGGAACCGGACGTGATGTCTCCCAACGGCAAGGTCAGCCCTTTCTCCGACTGCAGGCCCAATGGTGCCCTGGGACACTGCTCCGATGAGGGGACGTCCGCCATGCTGCGGCCCTACCACAAACCGCGCGACTACGTGGAGGCCTCGGTGTGCCACGTCAAAGACCTGGAGAATGGACAGATGCGTGAAGTGGACCTGGGTACCGGCAAGGCTCTTCTGATAAAGGACCGTGGAGAGTTCTGTGCAATCGGACACAAGTGCCCGCACTACGGCGCACCGCTGGTCAAAGGCGTCTTATCAAAGGGCCACGTGCGCTGCCCCTGGCACGGCGCCTGTTTCAACATCGCCACGGGAGACATCGAGGATTTCCCCGGCCTGGACAGCCTCCCCACCTTCCAGGTCAGAGTGGAGAAGGACAAGGTGATCATTCGGGCTAACAAGCAGGCTCTTCAGTCACAGAAAAGGACAAAGTCGATGTCCAGATGTTCAGCGGTCATTAACTCCAGCACAGGGTTCAGTCATGTACTCATCATTGGAGCAGGTCCTGCTGGACTGGTGTGCGGAGAGACGTTGAGACAAGAGGGCTTCACTGACCGCATCGTCATGTGTACCATGGACAGACACCTCCCCTATGACAGACCTAAACTGAGTAAGTCCCTTGAAAGCACGGCCGAGCAGCTGAGGCTGAGGTCAGAGGAGTTCTTCCAGACGCACAACATAGAGCTGCTGACGGAAAAAGAGGTCGTCTCGGTGGACGTGAGGACAAAAACCGTCATGTTCCAAGACGGATTGAAGATGGAGTACAGGAAGCTTCTCATTGCAACAGGAAGCACACCCAAGCCCTTGAACTACAAAGGCAAGGATGTAGAGAACGTGTTTTACCTCAGAACACCCGAAGACGCCAACAGCATAGCCAGGCTCGCCAACAACAAGAATGCGGTAATCGTGGGAACCTCGTTTGTTGGGATGGAAGTGGCAGCAGCCCTCACAGATAAAGCCCATTCCGTCTCCGTCATCGGGACCGAGGTGATCCCCTTCCGGAAATATCTGGGAGAGAAAGTGGGAAAAACCATAATGAAGATGTTTGAGACCAACCGCGTGAAGTTCTACATGCAGAACGAGGTGTCCGAAATGCGTGGCCATCATGGACAGTTAAAAGAAGTGGTTTTGAAAAGCGGGAAGGTCTTGAGAGCTGATGTGTGTGTCATCGGTACAGGGGCGGGCCCCGCCACGTCCTTTTTAAGACAGAGCGGGATACACATGGACTCCAAGGGCTTCATCCCAGTTAGTAAGACGATGCAGACGAATGCAGAGGGAGTCTTTGCCGGGGGAGACGTGGTCACCTTCCCTCTCTTGGCACGCAGCAGTAAGAAGGTGAACATCTCGCACTGGCAGATGGCTCATGTGCACGGGAGAGTGGCTGCCCTCAACATGATGGGCACTACCACAGAAATAAAGACGGTGCCTTACTTCTGGACGGCCATGTTTGGGAAAAGCATAAGATACGCAGGCTATGGAGAGGGATTCGATGACGTGATCATCCAAGGAGATCTGGACGAGCTGAAGTTTGTGGCCTTTTACACTAAGAGCGAGGAGGTGGTCGCAGTGGCAAGCATGAACTATGACCCCATTGTGTCCCGAGTAGCAGAGGTCTTTGGATCTGGAAAGACGATTAGGAAACGTGACGTGGAGACTGGGGACATGTCGTGGCTGATTGAAAAAGGCACACAGTGAGCATCTCAACCTGCTTCCGCAGCTCTAAAAGTctgctggggaaaaaaagacaaaacgagGAACTCAAGGTGCTGTCATGGCAACCAACTTTTGGCGACTGGAGACGTTGGGAAGAAGGCCATGCCTGGATCTTGCATGGGACACCTTCGCCTACGTTTGGTTCTGCAGAGTGTTTGCGGTGACAGAATTGTACATATTGTAATAAAATTTAAGTGTACATGAGCCATAAAACAGTTCTAACAACCAGCTCAAACAACAATAGAGCAGATCTCCGGAAAAATTTCAGACTCAACTAAAAAGCAATACTGTACTGTCAATATTCTGTGCATGATGCATCTACCTGTACACATTGTCTATAGGGGTGTATAGGGGTATTGCCATTTTTGTACATGTAACTTTGTAAATAGCTATTACAAACACTGTACACACTGTCTCAGTATAGGTCTGTACAATTTATGCAGATCTTTAAAATAAGATATCGCTTGGTTACATCCAGGGACAAATGGAAACTGGACTTTTATTTGGGCTTTTTTGTTCACATGTAATATTTTTGACATTTTGTAGATCTGGACAGGAAGAAGCAAAGTTACCTGCTGTAGAAGCCACACTAAAATGAAGTATTTGGCTTAGCAGGGAAAAGTACAAGAAATTCACAGTGCGTAGGAAATACAACATTTCTTCAAAGCCAGGCAAAACGTTAAAACAATGACGACCCTTAAAAACGAATGCAAGTACGCTAAAGTCGCTACTTACTGCTCCACCCTGACTGATTTGTATGCTCTGAAATGCTAGCATATTGCCTCTTTAATTAAAAGGAATACAGAGTTCCTCTTGCTATCTAACTTTGGTAGGCCTGCTCGTAGATTGCACAAATTAAAATCTGAATGAATGCAACTGGCAAAATAATGTAGGCTTGTATTTTCTAACAGAATCATTGAAATTATTTTCTAGATGGTATGCAATAATTTctaaatgccatttaaattttttttttgcttgatacAGCTTCTAATAGACAGTCTTTGTTACTAACTCAGGGAACTGAGCTTTTGGGGGGAGGGAGTGGAATCAAGATTTGGCCCtgttgaaaaaaaatgtgtatttgTTGCATTAACGTTCCTTCCAGAAATCTGTTCACTGTATTGTAATGGTCTGTCTTCATGAAGAATTCTTTCATTAGAACAGAGTACTAATCATATAATCATATCTCGTATAAGGACTTTTGCTCGGATGGATAAGAAAAATGTCACTGCACTATGCATACATTGTACCAAAAGTTACAAAGGCCATAGCtagattttattgttttttataaattaaaaatgtcTGTTTTGTCTTATTGCTGCTGCCTGATATGGTTACATGGAAACTATTTAATAACAAAACTATTTGGACTTAATAAAACTCTGGCAGAAAGCTGTTTCCTGGAATGAGAACTACCAGAGTTAAATATTAGATGCAATGTTGTGATACATTTcaataaaatgcacaaaaatgAGAAGAAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00355	Rieske	Rieske [2Fe-2S] domain	Domain	Interproscan
PF07992	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF14759	Reductase_C	Reductase C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016156	Homologous_superfamily	FAD/NAD-linked reductase, dimerisation domain superfamily	Interproscan
IPR017941	Domain	Rieske [2Fe-2S] iron-sulphur domain	Interproscan
IPR023753	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR028202	Domain	Reductase, C-terminal	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR036922	Homologous_superfamily	Rieske [2Fe-2S] iron-sulphur domain superfamily	Interproscan
IPR050446	Family	FAD-dependent Oxidoreductases and Apoptosis Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43557	APOPTOSIS-INDUCING FACTOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016651	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0051537	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0097194	Biological Process	execution phase of apoptosis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-