Gene detail

Detailed information of SKAU_T00001590 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00001590	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	CM056376.1	2877664	2899092	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00001590

ATGGCGGCAAAGGGGAACGAAGAGGAGACGCAGTtgcaagagatggaggaggagacggcggcggcggcggcggcggcaacAACCGGGGTCGAAAGAGAAATGGTATCTGACGAGGAGGAGGGAATGGGGGTCGAGGATTCTGATGAAGAAGACGATTCGTCTGATGATGAAAAAGAGAATGAAGCCGAAATCCAACGTTTGGAAGAGCagCTGTCCATCAATGCGTTTGACTACAACTGCCATGTGGATCTTATCAAGCTGCTGCGACAGGAAGGAGAACTGCTTCGGCTGCGCAGGGCCAGACAGAAGATGAGCGAACTCTTCCCACTCACAGAAGAAATTTGGCTGGACTGGCTGAAAGACGAAATCCGCATGACCGAGGAGGAACCCAATCGAGAGAAAGTGAATGAGCTCTTTGAGAAAGCTGTGAAAGATTACATATGCCCAGAGATCTGGTTGGAATATGCCCAGTACTCCATCGGGGGAATGGGGTCTCCTGGTGGGATTGAAAGGGCGCGGGCGATCTTCGAGAAGGCGCTAACTGCGGTTGGGCTCCACATGACCAAGGGGGCAGCTGTATGGGAGGCCTACCGGGAGTTTGAGAATGCCATTATGGGCACCATGCAGCCTCCTCCAGGAGGCATTCCCACCCGCGAGCAGCAGGAGCTGTTGAACACTCAGCTCGAGCGTATCCACACGCTATTCCGCCGCCAGCTGGCCATCCCCCTAATGGATATGGAGGCTACGTATGCAGAGTATGAGGAATGGTCGGATAAAGGCATCCCGGAGACCGTCTCGGCGCAGTTCAAGAAAGCCACGCAGCATATGGAGAAGAGCAAAGCGTTGGAGGAGGCTCTGCTGGTAGCCGAGCCTCCTAAGCTAGCGGAGTACCAGGCCTACATTGACTACGAGCAGCAAGAAGGGGACCCCGCCCGGATCCAGATCATCTTTGAGCGAGCACTAGCCGAAAACTGCCTCGTACCCGACATGTGGGCTAAATACACCAAGTATCTGgaCCGTCAGCTGAAGATCCGGGACCTGGTTCTGCCCTCTCATGACCGTGCGGTGAGGAACTGCCCCTGGACCATGGGCCTGTGGAAGAATTACCTGATGGCTCTGGAGAGGCATGGGGCGGAGCACCAGACCGTATCAGAAATCTTTGAGAAGGCTCTGAACGCAGGATTCATCCAGGCCACAGACTATGTGGACATTTGGCAAGCTTACCTGGACTACCTACGAAGGCGTGTGGATTTCAGCAAAGagtCGAGCCGGGAGCTGGAGGAGCTGCGGACGGCCTTCACACGCGCCCTGGACTACATGAAACAGGACGTGGAGGAGAGGTTCAGTGAAAGTGGGGACCCCTCTTGTACAATAATGCAGATCTGGGCCAGAATAGAGGCATTGCACTGCAAGAACATGCAGAAGGCCCGGGAATTGTGGGATAGCATCATGATGAAAgggaatgccaaatatgccaacATGTGGCTGGAGTACTACAACCTGGagagGTCATATGGAGATGCTCTGCACTGCAGGAAGGCCTTGCACAGAGCCGTGCAGTGCACGGCGGACTACCCTGAGCATGTGTCTGAGGTTCTGCTCACCTTCGAGAGGGTGGAAGGCTCCTTGGCGGACTGGGACATAGCGGTTCGGAAGACAGAGACGCGATTGACCCGGGTCAACGAGCAGAGGTCCAAAGTGGCGGAGAAGGAGGCCCTGCTTGCTCGGCAGGAGGAAGAGAAGGCCGAACAGCGCCGCAAAGCCAAGGCCGACAAGAAGGCCCAGAAGAAAACCCAGAAGAAGACTGGAGAGAAGAGGAAGGCTGATGAAGAGGAGGACGAAGAGGACGAATGGGGGGATGATTCCGAACAGCCCACAAAGAAGCACCGCGGCGAGGGAGACCCCGGCTTCAGCGGCCTGGGGTCCGAGGAGTTCATGGAGACGGAGAGCGGGCTGTTCGGGCGGAAGGGTGCCGCGCCCAGGAAGGCGGACGCGCCGGGGCCCAGGAAGGGCCGTCTGCTGGCGGACGAGGCGCGGAAGGCCCAGGACGCCACGCTGGACAAGCGCAACGACGGCTTGAGCGTGTTCGTCAGCAACCTGGTCTTCTCAATGGAGGACCCAGAGAAGAGGATGCGCGAGCTCTTCCAGGCCTGCGGTCCCATCCAGCAGGTCCGGCCCATCTACGCCACAAAGGGCACCTTCAGGGGCTACTGCTACGTGCAGTTCCAGGAGCAGAGCTCCGTCAATGAGGCCCTGAAGCTGGACCGGCAGGAAGTGGACAGCAGGCCCATGTTCGTCTCCCCGTGCGTGGACAAAAACAAGAACCCCGACTTCAAGGTTTTCAAATATAGCACATCTCTGGAGAAACACAAGATCTTCATCTCCGGCCTTCCGTACTCCTGCACCAAGGAGCAGCTGGAGGAATTGTTCAAGGAGCACGGGACGGTCAAGGACAGTCGGCTGGTCACCAACCGCTCGGGGAAGCCCAAGGGCCTGGCCTACGTGGAGTTTGAGGACGAGGCCCAGGCCTCCCAGGCCGTGCTGAAGATGGACGGTACGGCACTCCAGGGCCACACGCTGACGGTGGCCATCAGCAACCCACCCCGCAGGAACACGGCGGAGAAGCCCGACTCCACCCGTGTCCTGGGATCCATGATGCCTCGCCACCTCTACGGAGCGAGAGGAAAGGGACGCACACAGCTCTCCCTTCTCCCTCGGTCCCTGCATCGACAGACTGGCCTGGATTCCAAGGCGGAGAACGGAACCCTGCAGAACCAATCGGGGGGTTCAGTGGACGGGGCTCCTGCCGCAGCTGGAGGGTCAGGATTGGAAGCTCAGACTAAGCCCCTCTCCAACGCGGACTTTGCCAGGCTGCTTCTCAAGAAATAA

Transcript

SKAU_T00001590

catcatgagaccaagacgacacctaacaattgatcaacagtacctcgccattgcgaggcttcaaacaggatgttctcagagggaagtggccactgagcttagagtgtcacagagtgtcatcagcaggttgcaacagagatacagagagactggaagagtcacagaaaggcatagaagtggacgtcctttggccacatcccacactgatgaccgcttcattgtgaacagtgccctgcggaaccggatgatgaatgccactcaactccaggcacatttaagggagGCAGATCAAGTCCCAACATGGCGGCAAAGGGGAACGAAGAGGAGACGCAGTtgcaagagatggaggaggagacggcggcggcggcggcggcggcaacAACCGGGGTCGAAAGAGAAATGGTATCTGACGAGGAGGAGGGAATGGGGGTCGAGGATTCTGATGAAGAAGACGATTCGTCTGATGATGAAAAAGAGAATGAAGCCGAAATCCAACGTTTGGAAGAGCagCTGTCCATCAATGCGTTTGACTACAACTGCCATGTGGATCTTATCAAGCTGCTGCGACAGGAAGGAGAACTGCTTCGGCTGCGCAGGGCCAGACAGAAGATGAGCGAACTCTTCCCACTCACAGAAGAAATTTGGCTGGACTGGCTGAAAGACGAAATCCGCATGACCGAGGAGGAACCCAATCGAGAGAAAGTGAATGAGCTCTTTGAGAAAGCTGTGAAAGATTACATATGCCCAGAGATCTGGTTGGAATATGCCCAGTACTCCATCGGGGGAATGGGGTCTCCTGGTGGGATTGAAAGGGCGCGGGCGATCTTCGAGAAGGCGCTAACTGCGGTTGGGCTCCACATGACCAAGGGGGCAGCTGTATGGGAGGCCTACCGGGAGTTTGAGAATGCCATTATGGGCACCATGCAGCCTCCTCCAGGAGGCATTCCCACCCGCGAGCAGCAGGAGCTGTTGAACACTCAGCTCGAGCGTATCCACACGCTATTCCGCCGCCAGCTGGCCATCCCCCTAATGGATATGGAGGCTACGTATGCAGAGTATGAGGAATGGTCGGATAAAGGCATCCCGGAGACCGTCTCGGCGCAGTTCAAGAAAGCCACGCAGCATATGGAGAAGAGCAAAGCGTTGGAGGAGGCTCTGCTGGTAGCCGAGCCTCCTAAGCTAGCGGAGTACCAGGCCTACATTGACTACGAGCAGCAAGAAGGGGACCCCGCCCGGATCCAGATCATCTTTGAGCGAGCACTAGCCGAAAACTGCCTCGTACCCGACATGTGGGCTAAATACACCAAGTATCTGgaCCGTCAGCTGAAGATCCGGGACCTGGTTCTGCCCTCTCATGACCGTGCGGTGAGGAACTGCCCCTGGACCATGGGCCTGTGGAAGAATTACCTGATGGCTCTGGAGAGGCATGGGGCGGAGCACCAGACCGTATCAGAAATCTTTGAGAAGGCTCTGAACGCAGGATTCATCCAGGCCACAGACTATGTGGACATTTGGCAAGCTTACCTGGACTACCTACGAAGGCGTGTGGATTTCAGCAAAGagtCGAGCCGGGAGCTGGAGGAGCTGCGGACGGCCTTCACACGCGCCCTGGACTACATGAAACAGGACGTGGAGGAGAGGTTCAGTGAAAGTGGGGACCCCTCTTGTACAATAATGCAGATCTGGGCCAGAATAGAGGCATTGCACTGCAAGAACATGCAGAAGGCCCGGGAATTGTGGGATAGCATCATGATGAAAgggaatgccaaatatgccaacATGTGGCTGGAGTACTACAACCTGGagagGTCATATGGAGATGCTCTGCACTGCAGGAAGGCCTTGCACAGAGCCGTGCAGTGCACGGCGGACTACCCTGAGCATGTGTCTGAGGTTCTGCTCACCTTCGAGAGGGTGGAAGGCTCCTTGGCGGACTGGGACATAGCGGTTCGGAAGACAGAGACGCGATTGACCCGGGTCAACGAGCAGAGGTCCAAAGTGGCGGAGAAGGAGGCCCTGCTTGCTCGGCAGGAGGAAGAGAAGGCCGAACAGCGCCGCAAAGCCAAGGCCGACAAGAAGGCCCAGAAGAAAACCCAGAAGAAGACTGGAGAGAAGAGGAAGGCTGATGAAGAGGAGGACGAAGAGGACGAATGGGGGGATGATTCCGAACAGCCCACAAAGAAGCACCGCGGCGAGGGAGACCCCGGCTTCAGCGGCCTGGGGTCCGAGGAGTTCATGGAGACGGAGAGCGGGCTGTTCGGGCGGAAGGGTGCCGCGCCCAGGAAGGCGGACGCGCCGGGGCCCAGGAAGGGCCGTCTGCTGGCGGACGAGGCGCGGAAGGCCCAGGACGCCACGCTGGACAAGCGCAACGACGGCTTGAGCGTGTTCGTCAGCAACCTGGTCTTCTCAATGGAGGACCCAGAGAAGAGGATGCGCGAGCTCTTCCAGGCCTGCGGTCCCATCCAGCAGGTCCGGCCCATCTACGCCACAAAGGGCACCTTCAGGGGCTACTGCTACGTGCAGTTCCAGGAGCAGAGCTCCGTCAATGAGGCCCTGAAGCTGGACCGGCAGGAAGTGGACAGCAGGCCCATGTTCGTCTCCCCGTGCGTGGACAAAAACAAGAACCCCGACTTCAAGGTTTTCAAATATAGCACATCTCTGGAGAAACACAAGATCTTCATCTCCGGCCTTCCGTACTCCTGCACCAAGGAGCAGCTGGAGGAATTGTTCAAGGAGCACGGGACGGTCAAGGACAGTCGGCTGGTCACCAACCGCTCGGGGAAGCCCAAGGGCCTGGCCTACGTGGAGTTTGAGGACGAGGCCCAGGCCTCCCAGGCCGTGCTGAAGATGGACGGTACGGCACTCCAGGGCCACACGCTGACGGTGGCCATCAGCAACCCACCCCGCAGGAACACGGCGGAGAAGCCCGACTCCACCCGTGTCCTGGGATCCATGATGCCTCGCCACCTCTACGGAGCGAGAGGAAAGGGACGCACACAGCTCTCCCTTCTCCCTCGGTCCCTGCATCGACAGACTGGCCTGGATTCCAAGGCGGAGAACGGAACCCTGCAGAACCAATCGGGGGGTTCAGTGGACGGGGCTCCTGCCGCAGCTGGAGGGTCAGGATTGGAAGCTCAGACTAAGCCCCTCTCCAACGCGGACTTTGCCAGGCTGCTTCTCAAGAAATAATAAACTGAACAAACTTGGAGAGCAACAAGAATTAACTGCCTTTTTTACGGAAGCCATTTTGTGTCCTTAAacagaagagagagggggaaaaaacattgtAATGTTGCTGTAAATATTTGGGGGGGGAGGAAAAACTCTGTCCTCAATTATATAAGAGAAAAAGCCTTAATCAACCATGGCTCCATTTCTGTTTTAATTTTACATCTTAGTTTTCCAAGTGGGAGAGTCAGCTGTTGAGACCCGGGCCTGAGAAAGAGTTTACGCATTTTAATAAAGCccagttaattattattattttttcttttgttggGTGAATACATTTTATAAGTGACCTGTGACTTATATATTTGTgtatatataaaaagaaaaagcTCAAAGTAAGgtgtactttttttctttttgtttgttcttGATGGGGATGAAAGGGTTTAGTGGAGcctaaagttttttttgttttttttaaacttttatttttttattttatttcagtgttATGTAAAAACTGCTACACCTGTGAATCATGTTTGCGATTGTTTTAAAACGTATATGCAAGAGCTTGagttttattaaaattaaatgtaTTGTAAATACTATATACCAGGACATGAAAAAGGTTGTGTATCTTTCATTGCATTTAAGCAAAATAAGGTTCAAATTGTCAAGTGAGTTGTGTGCCATGGGGTGGTTGGCTAACACAAAATTATTGGGAGCGCCTGCCTGTTCAAAGCAACCATACACATTTATAAAGAGTATTGCTATGCTTTACAGATGCTGTCGGAACTGAAGTTGTACAAATAACTTATTTACAGTGACATAACCCAAGTTCATTCTTTGCCAAGAACTGTGCTTGCGCCTTTAGATTTCACTTAGGATTCCTCAGAAATGTCCCAAGTTGACCTTAGGAAAGCATGACTTGTCAACTATGGCGATCCTGTATTGCTTTTACCATATGCTGGCTTTGCTCATCGTTGGCACTATTAACAGGTGGTTTTGaagttgtgtatgtgtgtctctttATTAAAACCCAGTGTTCTGATTTTAAAGACCGGTGATGACCATCTCTCACATTGAGGGtgtttaaagaaaagaaaagaaaaaaaacaggaactgaAAGGACTATTGGTGTGTTCCCAGGGGACGATTAATACCGAGCGCATTGGCTAGTCGTCAATCCCAGAATGCCTCTTTTCTGTGTACTTCTGGCTGTTCCTTGTTAATATCGTTCAGAGCCAACATGTCACAAGTAACCCTGCCTTACTCTTAGTCCTCTATAATAGCCATACAATGATGAGTGATTATAGCCAACACTGTGAAACGGACACTTCTTGGAGAAGTTGACGGGGACAAGGCAACAGGCATGTATGTAGTGCTTTGAATCAGAAAGCTGGCATTGTAAAAGCTCACCCGGACCCCCACCACTCTTGGAACCGACCATTTTAAAATCTATGCAGCTGCGTATTGTGAGAAAAACCTTCCCTGTTCTGTTCCTTTTTTCAGATTGTACAGAACCTATACTCGCTATATAACGAAGACAATGTATCGTATAAACAAGATTCAAATTATGCTCTTATTGGTTAGTGTCAGGATGTGTGCTCGGTAAAAGTGTTTGAACTGAGAACATCTGGATATACATTTTCTGGGTCTCATCCTTTAGCCCatctttgttcttttttctacGTGCAGATAACTCCATAGGAAATTTAATTGGGTGGGAATATAGATTAAGTATGTATTTTAGCCAAAACAAGGTATTTATTTTCTTGAATTGTCAGAATTAGTTTACTTTGCTAAGTTTACCTAGGTAGTTCAAAGGGTAAGGCTTCTGTACTAGTTTTCACcagtgagactttttttttgttgagaaatcAGATGTTCCGTGTTCACATCCCCCCCAGTGGTTGGCCATAGTTTTGTACTGCATTTGTATgttttaaaatgacaaaatttgcaaaaatctagtgacgtatatattatatatcaccACAGTGGCCTATTTTAGTGGAGactacagaaataaaaaaataaattaaaaaagtggCTACCTGTATGTCCAATGTTCTGTATAAAAAGGTGGTGTTCAAATTGTATAGATTTTAAATGGTTTCTTTTCTGTTGTTAAGATGTGAGTTCATCTGCTATCCGTTGATGTCTATGCTCTGAAGCGtactggaattttttttttttttcgtttaccAAAACCTTTTTTCAATGTGGCAACTTTTTTGTTGTTCATGGATCATTTTAACTTCCTGTGTATTTTTAGTTCCTGCTTGTTCAAAGTTTTCCTTTGGTTGTTGATCTCAAATTGTATAAAAAATTGTCATCTCTTGTGATTATTTTGTTTCTGGCCTAAAATGCTTAATTAAAAGCAATTAAATATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF16605	LSM_int_assoc	LSM-interacting associated unstructured	Disordered	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003107	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR034217	Domain	SART3, RNA recognition motif 1	Interproscan
IPR034218	Domain	SART3, RNA recognition motif 2	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17204	PRE-MRNA PROCESSING PROTEIN PRP39-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-