Gene detail

Detailed information of SKAU_T00001170 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00001170	VACUOLAR PROTON ATPASES	CM056376.1	2128404	2146160	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00001170

ATGCTGCGCATCACCCGCAACTTTGTGCACCGCAGCGCGGAGCGCGAGCCCCTGCAGGCTCAATACGAGGAGTTCCCCTTCTTGGAAAAAGACACCATGATGGACTACACCAGCATGCAGCGTCTGGGAGCCAAACTTGGGTTCATCTCTGGCCTTATCCAGCGGGTGAAGATCGAGGCCTTCGAGCGCATGCTGTGGAGGGTGTGCAAGGGCTACACCATCCTCAGCTACTCAGAGATTGACGAGTGTTTGGAGGACCCAGACACAGGCGAAATCACCAAAAGCGTTGTGTTCCTAATCTCCTACTGGGGTGACCAGATCGGCCAGAAAGTGAAGAAGATCTGTGACTGCTACCACTGTCATCTGTACCCCTACCCCAACAGTAACGAGGAGAGGAAGGATGTGGTCGAAGGCCTCAGGACCCGCATCCAGGACCTACACACTGTGCTGCATAGGACAGAGGAGTACCTGAAGCAGGTGCTGAACAAGGCCTCAGAGTCTGTATATACCTGGGTGATCCAGGTAAAAAAGATGAAGGCCATCTACCACATCCTCAACCTGTGCAGCTTTGACGTCACCAACAAGTGTCTTATCGCCGAGGTTTGGTGTCCTGTTAATGACCTGCCCGTCCTCCGGAGGGCGCTAGAGGACGGCTCGAGGAAAAGTGGAGCCACCGTCCCCTCCTTTGTGAATCGTATCCCGTGCAGTGAAACTCCACCCACCCTTGTAAGGACCAATAAGTTTACCTCAGGCTTCCAGAACATTGTGGAGGCCTACGGAGTGGGGAACTACAGAGAGGTCAACCCAGCTCCCTACACCATCATAACCTTCCCCTTCCTGTTTGCGGTGATGTTCGGGGACCTGGGCCACGGCGTGATCATGGCGCTCTTCGCCCTGTGGATGGTGCTGTGCGAGAACGACCGCAAGCTGAAGCGCACCAGGAACGAGATCTGGAACACATTCTTCGAAGGCCGTTACATCATTCTGATGATGGGCCTGTTCTCGGTCTACACGGGGCTCATCTACAACGACTGCTTCTCCAAGTCTCTCAACATCTTTGGCTCGAACTGGAGCGTCAGGGCCATGTTCGAGCAGAAACAGTGGACGAATACTACTCTACGCTCAAATGGCGTCCTTTCCCTTGATCCCAATGTGACTGGAGTGTTCACTGGGCCATACCCCTTGGGCATAGACCCGATATGGAACATGGCATCAAATCGTCTGACATTCCTGAACTCCTATAAGATGAAGATGTCTGTTATCCTGGGCATATTTCATATGAGTTTTGGAGTCATCCTGGGAGTTTTCAACCACCTGCACTTCAGGAAGAAGATCAACATCCTCCTGGTGTTCCTGCCAGAGCTGCTGTTCCTGCTGTGTCTCTTCGGCTACCTGGTCTTCATGATCGTGTACAAGTGGCTGGCGTTCTCTGTGCAGGACTCCCAGCTGGCTCCCAGCATTCTCATTCACTTCATTAACATGTTCCTCATGCAGGGGGACTCTGTGCGGCCCCTGTTCCCCGGCCAGGCAGGGTTTCAGGTGTTCCTGTTGGTGATCTCCTTGCTCTCTGTACCTGTCCTGCTGTTGGGCAAACCCGTCTACCTGTACTGGCTGCACCACGGCGGAAGCAGCATGGGCTCCTACCGGGGTTACGAGCGAGTTCGCCGCAGCAGTGAGGAGGAGCTGTCTTTGATGCGGGCTCACGACATGGAGGAAGGTGGGAGTCATGGCGACCACTCAAACAGCCGGGAGAGTCAGGGCGAGGAGTTTGACTTTGCGGATGTGTTCCTGCACCAGTCCATCCACACCATAGAGTACTGCCTGGGCTGCATCTCCAACACCGCCTCCTACCTGCGGCTGTGGGCTCTCAGCCTGGCACACGCCCAGCTGTCCGAGGTGCTGTGGGCTATGGTGATGAGGGTGGGTCTTCGGGTGGACACAAAATTTGGGGTGGTGTTCCTGGTGCCCGTGTTTGGCCTGTTCGCCGTCCTCACTGTGTCCATCCTGCTGGTGATGGAGGGACTGTCTGCCTTCCTCCATGCCCTCAGGCTGCACTGGGTCGAGTTCCAGAACAAGTTCTACAACGGCACCGGCATCAAGTTCATccccttctccttctccctcctGCCCTCCAGCTTCGAGCACGACGGCCTGCTGTGA

Transcript

SKAU_T00001170

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01496	V_ATPase_I	V-type ATPase 116kDa subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002490	Family	V-type ATPase, V0 complex, 116kDa subunit family	Interproscan
IPR026028	Family	ATPase, V0 complex, subunit 116kDa, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11629	VACUOLAR PROTON ATPASES	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000220	Cellular Component	vacuolar proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007035	Biological Process	vacuolar acidification	Interproscan
GO:0016471	Cellular Component	vacuolar proton-transporting V-type ATPase complex	Interproscan
GO:0033179	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:0051117	Molecular Function	ATPase binding	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-