Gene detail

Detailed information of SKAU_T00001040 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00001040	STOP PROTEIN	CM056376.1	1952332	1971754	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00001040

ATGGCGTGGCCGTGCATCTCCCGGGCTTGCTGCATGGCCCGCTTTTGGAACCAGCTTGACAAAGCTGACATTGCGGTGCCTTTGGTTTTCACCAAGTATTCCGATGTGTCCGAAACGCAGCACCTCACTTTGCACCACCAACAAAAGCAGCCGCATCCCCAGGCACGGGCGAGCGCCGTCGCCATAGAAACGCAGCAGTCCCATAGCGAACAGGAGGTAGCAGCCAAGGCGCCGCCCGCTACGGGTACCGCTGCGCCCGACGAGAGCTCGGGCTCATCGGTGATGCGCCAGGACTTCAAACACTGGAAAGTACGCCCCGAGCCTAGTTGCAAACCCAAAAATGAATATCACGTTTCCGAGACCCCGTTTAACAACGAGACGCAATATCAAAAGGATTTCAAGCCATGGCCTGTTCAGAGAAGGGAGGACCATCCTTGGATTCCCAAACCGAGCCCCGTCATTTCTGCCCCCGACGACCGAGCTGCACAGAGATCTAAGCATGTCCAGGCACCCGCTGAAGTCGATAGCGGTGTGGAGAAAGGCGAAATTGCAGACAAGGTGCACGAGAAGGAGACTCTTGCCGGAGAGAGGAAAAAGAAGCAAGGGAAGAGACCTTCAGCGGAGAAGGTAGTTGGAACTACGGTGGGAAGCAAAACGGAAGGGCAGCAGCAAGATGCTCCCGTAGAGGGCAAAGGGAGAGAGGCAGCGGACGCGGTGAACCGGCAGATCAAGCAGGAAGTTAGCGCTGATGGGAGCTCGTACAGGAACGAATTCAAAGCCTACACGGACGTGAAGCCCGTCAAGGCCATCCGAGCCAAGTCCCAGTACTATCCCCCCGACGAGAAAACCTGCCTGGAGACCAGCTACAGCGCCACCTACAGGGGCGAGCAGGCCAAGCAGGACATGGACCCGAAGGGCCCGGACCGCCGGAGGATACGGAGCCTGTACAGCGAGCCCTACAAGGAAACCAGCAAAGGCTCTGCTGAGGCTGAGAGCAGCTCTGTTATTGATCCACTGTACTTTCAGATACGTGAACCTCAAACCCCCCACAAGGACAGGAGCGAGGATCTTCGGACCAAGCAAGCGCCCGCAGCCTCCCCCAAATTCAGCCCAGGGGGGTTTCCCAAGAGACAGACAGGCTCCTCCACTCGCCCGCTAAAGGGGGTCCCAGCAGCCCCGGCGGGACGGCGTTCCCCTCACTCCTCTGCCCACCACCACGCGCCCCGCTCCCCACGGGCGTCGCGCGGCTTCCGATCTGCCAGCCACGGCCGAACGGGGAGGGGCGTGCCCGAGAGGCAGGAGGCGAAGTTGGAGGGGCGGGGCTTCAGCTTCCAGCTGCTGCCCAGTCTGGACCCCCAGAAGGAGCAGGACCTGTACCGCAGCTTTGAGGCCGAGTTCCTGGCCAACACCCAGCTCGCTGCGGGGGGTCCCAGCaaggacctggcaaccctgcagCTGCCTGTtgcacagcaacagcaacagcagcagcagcagcagactcAGGGATTAGCGGCCCTCCCACTGCCCACTCCGGGGGACCCTAACGCAGGGGCATTGCCTGACCTTCGGGAGCCCCGAAAACATCCCGCCAACCCCCCTGCCCTGTCCTCTGGAGAACGCGGCGGTCCTGGACAACACCGTCCGCCCCAACAACGGTGGGCACCTGGAGGGCTGGGGGGGCCACGGGGGGCGGGCACGGCAAGCTGCCCGCCCTCCCTGGCTCCCTGGAGGAGGGCGAGCTCCTCTCTTCCCTCAACAACCTCAGAGACATGGAGCTGGTGGGCTGTGAGTCTCAGGGCCTCCGTTGTAAGGACCGCAGCGGAGGCTACAGGCCCCAGGGCCAGGACACACAGATGGACGGCAGGCAGGGGCGGCTGGACTGGGCCGAAGGGGGGCGGCCACCCGGACCACCACCCGGGGTTCCCGTTCCGCCTCAGCTACCAAGACCCCGACGACGACGACCTGCCGCCCCCAGAAGAGTGCCCGtcgcccctccccctgcccccgtCCGAGGACTGCTCCTTCCAGGACTCCTCCAGCGAGAGCTCGTCCATGTGCATCAGTCTGAGCGAGCCGCACTCCGGGGACCCCTCCCCTCCGCCCACGCCGGCCAATGGGGACGCAGGGGTGGTCCTGAGGCCCAAGAAGGGGCTAAAGAAGCCAGACCGCGTCCCCTCCATTTACAAGCTCAAACTACGGCCCAGGATCCGGCCCCGAACCGACAACCGGCCCGAGAACAGCCCCTCACGAATCCCCACACCCGTCAGCTAcaaggagcagcagcagcagcagctcacAGGCCACACCCCCCTCCACACTCCGCCCCGCTCCCCCCAGGTCCCCCGGGTTCAATGGGCACGCGCGATCACGGAAGGCCCTGCACCAGGCCTTGGCTAA

Transcript

SKAU_T00001040

GTGACGATGAAAGAGCCAGGTGATATTTCACTGCTCAGATCCCGAGCATCTTCTCCTGGGGATGCTAGAGCGAAGCGGGCGGGGTCATTTTCTTGCAGCATTatccttttttttccccacacacagCGCAATGTGCAAGACTGAACACATCTGAACGAGGACTGAGATCTGAGCACATTTGAAGAAACTGAAAATCTGGGGATATATTTTCGTTTTTGTTCCCCATCCCTTTGATCCGTCATGGAACCGTAGTCTGTTGTTCTGGGGCATTataaaataaacttgatttcaagATACAGCGACGCGGACATTTTTTTTACCAATTTGGTGGACAGTTTGGGCCCCCCAGAGGAGTGAGGATAGTGAACAATTTCCCAAATTCTGATCTCGGAtttgcaaaaaaatattaaaaggtTGGACACGTTACTGAATTATACAGGCTATTTTTGCTGGTTTCATTAATCGCCATAATCATGGCGTGGCCGTGCATCTCCCGGGCTTGCTGCATGGCCCGCTTTTGGAACCAGCTTGACAAAGCTGACATTGCGGTGCCTTTGGTTTTCACCAAGTATTCCGATGTGTCCGAAACGCAGCACCTCACTTTGCACCACCAACAAAAGCAGCCGCATCCCCAGGCACGGGCGAGCGCCGTCGCCATAGAAACGCAGCAGTCCCATAGCGAACAGGAGGTAGCAGCCAAGGCGCCGCCCGCTACGGGTACCGCTGCGCCCGACGAGAGCTCGGGCTCATCGGTGATGCGCCAGGACTTCAAACACTGGAAAGTACGCCCCGAGCCTAGTTGCAAACCCAAAAATGAATATCACGTTTCCGAGACCCCGTTTAACAACGAGACGCAATATCAAAAGGATTTCAAGCCATGGCCTGTTCAGAGAAGGGAGGACCATCCTTGGATTCCCAAACCGAGCCCCGTCATTTCTGCCCCCGACGACCGAGCTGCACAGAGATCTAAGCATGTCCAGGCACCCGCTGAAGTCGATAGCGGTGTGGAGAAAGGCGAAATTGCAGACAAGGTGCACGAGAAGGAGACTCTTGCCGGAGAGAGGAAAAAGAAGCAAGGGAAGAGACCTTCAGCGGAGAAGGTAGTTGGAACTACGGTGGGAAGCAAAACGGAAGGGCAGCAGCAAGATGCTCCCGTAGAGGGCAAAGGGAGAGAGGCAGCGGACGCGGTGAACCGGCAGATCAAGCAGGAAGTTAGCGCTGATGGGAGCTCGTACAGGAACGAATTCAAAGCCTACACGGACGTGAAGCCCGTCAAGGCCATCCGAGCCAAGTCCCAGTACTATCCCCCCGACGAGAAAACCTGCCTGGAGACCAGCTACAGCGCCACCTACAGGGGCGAGCAGGCCAAGCAGGACATGGACCCGAAGGGCCCGGACCGCCGGAGGATACGGAGCCTGTACAGCGAGCCCTACAAGGAAACCAGCAAAGGCTCTGCTGAGGCTGAGAGCAGCTCTGTTATTGATCCACTGTACTTTCAGATACGTGAACCTCAAACCCCCCACAAGGACAGGAGCGAGGATCTTCGGACCAAGCAAGCGCCCGCAGCCTCCCCCAAATTCAGCCCAGGGGGGTTTCCCAAGAGACAGACAGGCTCCTCCACTCGCCCGCTAAAGGGGGTCCCAGCAGCCCCGGCGGGACGGCGTTCCCCTCACTCCTCTGCCCACCACCACGCGCCCCGCTCCCCACGGGCGTCGCGCGGCTTCCGATCTGCCAGCCACGGCCGAACGGGGAGGGGCGTGCCCGAGAGGCAGGAGGCGAAGTTGGAGGGGCGGGGCTTCAGCTTCCAGCTGCTGCCCAGTCTGGACCCCCAGAAGGAGCAGGACCTGTACCGCAGCTTTGAGGCCGAGTTCCTGGCCAACACCCAGCTCGCTGCGGGGGGTCCCAGCaaggacctggcaaccctgcagCTGCCTGTtgcacagcaacagcaacagcagcagcagcagcagactcAGGGATTAGCGGCCCTCCCACTGCCCACTCCGGGGGACCCTAACGCAGGGGCATTGCCTGACCTTCGGGAGCCCCGAAAACATCCCGCCAACCCCCCTGCCCTGTCCTCTGGAGAACGCGGCGGTCCTGGACAACACCGTCCGCCCCAACAACGGTGGGCACCTGGAGGGCTGGGGGGGCCACGGGGGGCGGGCACGGCAAGCTGCCCGCCCTCCCTGGCTCCCTGGAGGAGGGCGAGCTCCTCTCTTCCCTCAACAACCTCAGAGACATGGAGCTGGTGGGCTGTGAGTCTCAGGGCCTCCGTTGTAAGGACCGCAGCGGAGGCTACAGGCCCCAGGGCCAGGACACACAGATGGACGGCAGGCAGGGGCGGCTGGACTGGGCCGAAGGGGGGCGGCCACCCGGACCACCACCCGGGGTTCCCGTTCCGCCTCAGCTACCAAGACCCCGACGACGACGACCTGCCGCCCCCAGAAGAGTGCCCGtcgcccctccccctgcccccgtCCGAGGACTGCTCCTTCCAGGACTCCTCCAGCGAGAGCTCGTCCATGTGCATCAGTCTGAGCGAGCCGCACTCCGGGGACCCCTCCCCTCCGCCCACGCCGGCCAATGGGGACGCAGGGGTGGTCCTGAGGCCCAAGAAGGGGCTAAAGAAGCCAGACCGCGTCCCCTCCATTTACAAGCTCAAACTACGGCCCAGGATCCGGCCCCGAACCGACAACCGGCCCGAGAACAGCCCCTCACGAATCCCCACACCCGTCAGCTAcaaggagcagcagcagcagcagctcacAGGCCACACCCCCCTCCACACTCCGCCCCGCTCCCCCCAGGTCCCCCGGGTTCAATGGGCACGCGCGATCACGGAAGGCCCTGCACCAGGCCTTGGCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21410	MAP6	Microtubule-associated protein 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007882	Family	Microtubule-associated protein 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14759	STOP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000226	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0005516	Molecular Function	calmodulin binding	Interproscan
GO:0005798	Cellular Component	Golgi-associated vesicle	Interproscan
GO:0005801	Cellular Component	cis-Golgi network	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0008017	Molecular Function	microtubule binding	Interproscan
GO:0030705	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0070507	Biological Process	regulation of microtubule cytoskeleton organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-