Gene detail

Detailed information of RPACG26816.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG26816.1	DEHYDROGENASE RELATED	tig00117971	255847	261736	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG26816.1

ATGCAAACCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAACCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAACCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAACCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAACCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCTCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTATTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACCTAAGTCATTCCCACCTTCACTTAGGCCCTGTCACATGCTTTGTAGGCAAATTCAGCACCTGCGAATTGCGCTACCTGAAATGTTTAGTGAACAAAACTAGACGAAATAAGTTCGGAAAAGACAAAATGACGGAGATGGCCACAGTCAACCAATACACCATTACATTAAAGAGCAAAGAATGA

Transcript

RPACG26816.1

AGGGAGGGAGGGAGGGAGGGAGAGGGAAGGAGGGAGAGGGGAGACAGACATATATAGAAAGAGACATAGAGAAAGAGAGACAGACAGAGAAAAACATACATACAGAGAGGGAGAGAGGGAGGGAGGGAGAGAGGATATGTACGTATATGTTTCATAATTACAAAACAAGGAACATAAACAGGAACCGTAACAATGACACCATGCAAATAATATATATCGTAAATGTGTTTTACGTAGAACGAGGAGAACATGCACTTGTTCGAGTTCTTCAGTTGACGTCATAATCATCTACATGCATGCATACATGTCGACAAAGCAAATATGAAAACTCCCGTCAATCATGCGGATACACAGCTAAGGTGCTATATTTCCCTCCCATGGTTGAAATCTATGTCATTTAATGACGTACAAGTCTCTGTTGAAATTAAGAAATTGCACATATTTGGTATATTTTGTGTAAAGAGTACGACAAGACAATTGATCGACTACGTCACATAGATATCACGGAGCAGACAGTTCGTGCATTCACATGCTGATGTTTCCCTTATTCGATTCTCTGTGCATTAGTCTCCCTCCTACACCTCCTCCTAACTCCAAAACTGCCAGCTCAACTCCATTAAATGTTATGGCAGATCATGTTTCAACAGTTGGTTATCGTACCTGATGGGTGGCCATTTTTGACTATCCGTCGACGTCAACGAATAAAAGTTATACAAAGGCTAAACATTACGATGCTATAATTAATATTTTCTCCAAACGTGTGTGGGAAAAAAGAAAACAGCAAATTAGCCGTTACTTGTGTATTAATATTAATTACAATGTATCGACACAAATACAACAAACAATTATTATAGCCTTGAATATATTATGAAGACCGTCAACATCAGTAACCAATTAACTCAATGCAAACCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAACCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAACCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAACCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTATTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAACCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCTCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTATTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATGCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCCCACTCAATGCAAGCCTTACTAAACCTTAGTCATTCCCACTCAATGCAAGCCTTACTAAACATTAGTCATTCTCACTCAATGCAAGCCTTACTAAACCTAAGTCATTCCCACCTTCACTTAGGCCCTGTCACATGCTTTGTAGGCAAATTCAGCACCTGCGAATTGCGCTACCTGAAATGTTTAGTGAACAAAACTAGACGAAATAAGTTCGGAAAAGACAAAATGACGGAGATGGCCACAGTCAACCAATACACCATTACATTAAAGAGCAAAGAATGATATGTTTTGGACAGACACGCACGAAACTCACTGAACTGGATGGCAACGGCAACCAGCCATGTCACACAGCAAGAGGATGCCAAACAACCTCAGGAATGAGAGCGTCGGGGAAACACTAAGAAAACACCATATTTCAACCTTTCGGCTGACAATTGCGCCACCTCGCGATACATAAGCTCGTAAAGTGGTTGGATAAAGGAAACTAAATAGCTAAACAAGTAAGAATATTACATATCAAAATGTACTTTTAAAATAAATAATACATTTTTAAGCACATATAGGCACTCTGTCAAACTTATTATCGCCAAACTATTACATGTGTGCGTGCGTGCGAGCGTGCGTGCGAGCGAGCGTGCGTGCGAGCGTGCGTGCGAGCGTGCGTGCGAGCGTGCGTGCGTGCGTGCGAGCGTGCGTGCGAGCGTGCGTGCGACCGTGCGAGCGAGCGTGCGTGCGACCGTGCGTGCGTGCGTGCGAGCGTGCGTGCGTGCTAGCGTGCGTGCGAGCGTGCGTGCGAGCGTGTGAGTGTGAATACATACCATATAAGTAAGCAATAATGATGATATAGTTATTCCCGATTAATAAGACAATCTCAAAATCTTATTTTGATCCATACATAAATCACCTCGCCAAAATACTGTATTATGCCGTCTTGATTTTAAGCAAGCTGTACGAGTTTGCTTTGAATTGTGCCTATTGTTTTCGTTTATGTCGATTCATTTTATATTTATACATTTCTGCGCGAAAACAAAAGTATGGTGCTTTTTTATACATCGTAGTATTTATACAGGTCCACGAATAATAATTTCGTACATTCGGAATTATTATTGGGGAAACTCATTCGGAAATATTAACCAACGAACAAGCGTTCGCCAGTCGTTGCCTGCCGTTGCGGGATGACATAAACACATGCGTACAAACGGGGTCACCCTAACATAGCGATTGGACTACATTCACAAGGATTCTGCGCTCCAAGTTTATGTCCGCTGTTGGTGTTGCCTTAGTGTTCGTTTACAAACATTGAGATGAATTTCATTAATACTAAGCGTGAGCATGTAAGAATATATTAATGACATTATAAATTAAACACAATAGTATAGTTAATAATAATACTGTTATAACAATTCTTGCATTTATTATTTGTTTGTGAAAATATGGATTTTCATAATTGTTGTGATGCTATTTTTTCAAGTGACTACAAACCAAATATTTTAATAGACAACCGCTATAAGTGAACAGGGTTCTCTTAGAATATTCAATACAATATTAATAATTCATATTTTAAGGCATTGCCTGAGAAAAATTGAAAAGATACAACAATTTTTGATAGCTAAAACCCATCTATAAATCGTTATCGTAGATTAATTATCTGTATAATTTAGGAAGGACAGGTAACAATGAGCACTTGACGTCATAAACATTCTCAGCAATTTGAATAATCAGGTAATTGTTAATTTATTACTATATTAAACTTTTCTGAACGCAAGTTGCCCCAATCGTGAGTTAGTACTTTAATCTGTAGTAAATAATTAAAAAAACACTATTTCTACGAATGCACACGCAAACAACAACGCATGTAAAGACGAAACAAAGAACATGCGAATTGTTGTGAATGTGGTCCTCCGTTCTGGCCAATCGAACGTTTGCGATAAACCTTTTAGGGTACGCCGTAAATTGTGCGTGCGCTCGTTTCTCAGTCGATGTTGTCAAATATTATTGCATCAGCACATATTGATATGAAGTAAAGTCAACAAAAATGATACTGTGTTATTGGCTCAGACTTGTCTCTTTCTGTACACCGATTTTCATGCACGGAACATTTGTATTTAGGTGTAAAACCACTGTTGGAAAATGACTCGTATTGGCGTTCTTCATCAATAACCTGGTTTTTTTCTGGGAATCCTTCTTGTAAGTTCGTGAATAGTTGTTTCCTAGCACATATGGTATATCCAGTAACATGCAATGCGTTCAGTTTTTATATGTATTTAGTAGGTTTCTGTGGGATGTCTATATGTTTACATCGATCAGCTAGGCTGTTTCGCAACTCAAACCAATCCAGTTAAGATGTTTCGCTGTACAAAATGGAGCTGTGCAGCTCAAAATATCGTCAAATTAAAAAAACCAATATTTAAATGATACTGTGGCGTGATTGTCATGGAATCGTCGTGTTATGTATTGATCGACGGTTATTAGGTAGTTTTACTGTCCTTTTAAAGTACAAATATCGCGTTTACTTGTTCTTGTGAAGTAATGTCTCAAAAATCAACGTGTCCATGTGATAACTACTACTGATTATCTTGACAAGATGTTACTTAGGTGAATGCGTTCGTCCATCTATGCGGAACAGTTGAGAATAAGTCAACGTTATTCTGCCTTTGTATCACCAATATAACTGTCTAAGTATGATTCCTAGCACCTTCGTCCATCCATCAACGTTTCACGCATTGTTCTACGATTACGAAATTGCTTAATCCCTTGGTTTTGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02779	Transket_pyr	Transketolase, pyrimidine binding domain	Domain	Interproscan
PF02780	Transketolase_C	Transketolase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005475	Domain	Transketolase-like, pyrimidine-binding domain	Interproscan
IPR009014	Homologous_superfamily	Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II	Interproscan
IPR027110	Family	Pyruvate dehydrogenase E1 component subunit beta	Interproscan
IPR029061	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR033248	Domain	Transketolase, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11624	DEHYDROGENASE RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004739	Molecular Function	pyruvate dehydrogenase (acetyl-transferring) activity	Interproscan
GO:0005967	Cellular Component	obsolete mitochondrial pyruvate dehydrogenase complex	Interproscan
GO:0006086	Biological Process	acetyl-CoA biosynthetic process from pyruvate	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG26816.1 global RNA-seq network