Gene detail

Detailed information of RPACG26806.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG26806.1	DNAJ HOMOLOG SUBFAMILY C MEMBER 2	tig00117971	186565	188937	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG26806.1

CCTCAGTCCTGATGGTGTGTGAGCCTTGCTGTGGACATGTATTTAGGTAGTGTTGAAACAACAGTCTTGGATCATCAAGTTTAAGGTCTTCGTCTGTGTCTAGACTCGCTTCAAGGCCTTGCAAACCCCCGAACACAACCAGTAGATGACTGGAACGAACAGATATCTGTAGTATTGAAGGACTAACTGAAGAAATAAATAATAACATTTCTGGTTTGACCATCAAAATTCAAGTTATTATTCTAAAATGAAACAAGAAAGACGGTGGCAAAAGTGGTGGTTGTCATGGCTTGCTTACTTCCTCAACAGGTGTGCAAAATAAAGTAACATAGAATTCTATATCCCTACCAAGTTGATCGGTTAGAAAGCTTTCTCTTGTCATCTTCCCCATGTTCCAGAGTTTCTATCACACCACTGACTGTAACCCTGACAGATCGCCTCACAATACTCTTAATTTAAGCTCGACCAATGAAATAAGACACGGAATAGGTGGTGATGGTGCTCTCCTTCCACTAATCAGTGCTCTCCTTCCACTAATCAGTGCTCTTCTTCAACCAATCAGTGCTCTCCTTCCCCTAATCAGTGCTCTCCTTCCACTAATCAGTGCTCTCCTTCCACTAATCAGTGCTCTTCTTCAACCAATCAGTGCTCTCCTTCCCCTAATCAGTGCTCTCCTTCCACTAATCAGTGCTCTTCTTCAACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACTAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACTAATCATTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAAGCAGTGCTCTCCTTCCACTAATCAGTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCATTCCACCAATCAGTGCTCTCCTTCAACCAATCAGTGCTCTCATTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGCGCTCTCCTTCCACCAATCAGCGCTCTCCTTCCACCAATCAGCGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCCCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTTCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACTAATCAGTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACTAATTAGTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACTAATCAGTGCTCTCCTTCCACTAATTAGTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACTAATCAGTGCTCTCCTTCCACTAATTAGTGCTCTCCTTCCACCAATCATTGCTCTCCTTCCACCAATCAGTGCTCTCCTTCCACCAATCAGTGTTCTAGTTACCAACAACGTGTGAGAGGCTCTTACTTAAATATGCAGCATCACTCAGTAGTTTCGGTGAATGGATGAATACATTGGAATTTCCAGAAGTTTATTCTCCATCTTCAAATAAGTTGTATGTACTGGGGAGGCGCAGTCATAACTGGTGAAGGCAGACACTATTTTGACTCAGTTGCTCTGTCAATGCACACATCTAGTCAATGGTTGTTTCCATTACAAAACATATCTGGCTAAGTTATGTCGATCTCAAGTAGAATCAGGTACCAAAACAATTAGTAAGATATATCCTCCTAGCAGTTGACCATTTTCACCCCAATGTCATATAAAGTGAAATTGTTGTTCACTAAATGGCAACTGTACTGCTAATTCAACAGACCTGAATGATTTCATAGCAAATGTATCAATGTCATCACCCCTTTCTGAGGTGCCAATCAACATGTCGTAGCCACCCTTATGTGGACACCCTGTGAACACCGCCCCTAGACTGGGGGCGAGGCGCACTGTATACCCCCAGTAGAGCCCAGCCTCTGTGCAGGGTGCGGTCGGAGCAACAGCCGTCCCTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226	DnaJ	DnaJ domain	Domain	Interproscan
PF16717	RAC_head	Ribosome-associated complex head domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005	Domain	SANT/Myb domain	Interproscan
IPR001623	Domain	DnaJ domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR032003	Domain	Ribosome-associated complex head domain	Interproscan
IPR036869	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR042569	Homologous_superfamily	Ribosome-associated complex head domain superfamily	Interproscan
IPR044634	Family	J-protein Zuotin/DnaJC2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43999	DNAJ HOMOLOG SUBFAMILY C MEMBER 2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0006450	Biological Process	regulation of translational fidelity	Interproscan
GO:0030544	Molecular Function	Hsp70 protein binding	Interproscan
GO:0043022	Molecular Function	ribosome binding	Interproscan
GO:0051083	Biological Process	'de novo' cotranslational protein folding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG26806.1 global RNA-seq network