Gene detail

Detailed information of RPACG26612.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG26612.1	RAS-RELATED GTP BINDING RAG/GTR YEAST	tig00117938	150307	158338	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG26612.1

AGGGGTCGATGTGCAGAGCTGATTGGCTACTGGCAGTTTCTGGGCGTTGATAAAAATACAATGGCACATGCATACGTGACGGCCACGAAGAAGATGGAAGGAATGATTGACCAGACTTCTTCCTTCATCACTCTGCCTCGCATCGCAGACGTTTACGAGGCAGTCGGCAGGTTCCTGAGAGACCTCGCACTCCTCAATGAGGCTCTGACGCCACTGCAGCGAGCACTAGAGATCCGGGAGACCGCCCTAGACCCAGACCATCCGAGCGTGGCCCAGAGTCTGCACCAGCTGGCTGGACTACATGCTCAGCAGGCCAAGTTCTCTGTTGCCGAGGCCCTCTACAAACAGGCGTGGGAGATCTATGATGGCGCCTTTGGACCTGACCATTGCATGGCTGCCAAGGAGATGGATGCGCTCGCTATTGTCTACCAGAAGCAGGGAAAACTAGAGTTGGCTGAGCCACTGCACAAGCGTGCTTCATCAATCCGACGCAAGTGTCGACTGCCTCGAGTCACGCCAACTTACCTGAGAGTCGCTGACCCACTGCGTAAGCGCACCCTTCAGCTGGAGGAGCTGGCCATGGCAGCTGACTCACTTGATCTCGCTCGCACACTCAATGAAATTGGTGTCCTCTACTACCTACAGAACAGCGTTGAAACTGCTGAGTCATTCTTCAAGCGGTCACTGGAGATGCGGGAGTCTCTGGTTGGTCTGGAGCACCCCGACTATGCCCAGTCACTGAGCAATCTCGCAGGGCTGTACAATGACCGCAGACAGTACGACAAGGCAGAGCCTCTTTATGAACAGGCCCTTGAGATCAGACGCAAGCACTTCTCAGCTGACCATCCAAATGTTGGCAGCGTCATCAAGAACCTCGCTATGATGTACAAGAAAATGGGCAAGTTGGACAAGGCAAAGGTCTTATACATGGAAATGGTGGAGATTCGTGAGAGGTCATTTGGGGTCAACCACCCTGCTGTGGCCACTGTGTTGGTCAATCTTGCCGTCCTGCACTCACAGCAGGGTAACCACACCCTTGCCCTGCCCCTGTATGAACGTGCCCAGAAGATCTACGAGGACAGTCTCGGGCCTAACCACCCTCGCGTCGCAGAAACCCTCAGAAACCTCGCCCTTCTCAAATACGACCAGGGAGAATATGAGACTGCAGCAAAGTTGTATAAACGTGCAACTGAGATCAAAGAGAGTGATCCGTCCATTTATCCGGTGAGGTTTCCTAGTCACCACGGCTCCACCGGTGACCTCTATCCACCAGTCAGGAAGTCACGAAGTCGTGCGAGCTCCAGCGGAGATACAGGATCAACACTACGCAACAATCACACGCTGCAGATACAGCCGACATACTGAGAATCTCGGAGATAACGTTGACTGTTACAGTGACAGTGTTTAGAACATAGTCTATTTTTAAATTAATGTTGACAATATTGTAAATAGTTCCCAGATGTAAAACATTCTACATTTTTGTAAGCCAATCATTGTTTGTCTGTGGAACGAGGTAAGCACCTGTGATCATAATATAATCATAAACTTGTTCTCACAGACTGTTTTATGCATTTCTAGGTAAAATCACATTGAAACCCTGTTTTCATCTTTCATTGACAGCAGTTACTTAAATAACTGTCTTTGTGTATTTAGTAGATCAGGTGATTGAAGGAGCCAAATGAATGTAGAACAAGATGAGTGAACTTTGACATATGGGAGAAGACACCACCAAACTTATCTTATTACTTCTTTAGACGCTGAAAGTCCACTAGTGGCACTACATAGACCTTGAATGTCCACTGGTGGCCATACATAGACCTTGAAAGTCCACTAGCTGCCATACAGACCTTGAATGTCCACTAGCGGCCATACATAGACCTTGAATGTCCACTAGCGGCCATACATAGACCTTGAATGTCCACTAGCGGCCACACATAGACCTTGAATGTCCACTAGCTGCCATACATAGACCTTGAATGTCCACTAGCGGTCATACATAGACCTTGAATGTCCACTAGCGGCCATACATAGACCTTGAATGTCCACTAGCAGCCATACATATTTCCTCGTCTAACTGTTGCTAATGTACAGAGGCATCACCATATGCTGGATACTTGTGTACCTTCTATCTCTGGATTCTTCATTGTATCCTGTGTGCTCAAATGTTTTTACATTGATGATTTTGCACTTGTCCTGCAGTAAAGACTTGTTATTGAAACAATATTAATAGTAATCTCGAAGGTGTGCATAGTTGCCCCTAGTTGCCCCTGCCATTATAAATGTACCAGAAGTCATTATAGTTACATCATTCACTTTCACTTGTGCCATATGAAGCAATGTTACGCCAAATGTTCACAGCTTTTATGAATGTGTAATTTGCTTTACATGTGTTCACAAATACAATTGTACAGTAAGCCATATCACATTGCATTGTATGCGATATACAAATTATTTACATGTGTAATAAACTGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04670	Gtr1_RagA	Gtr1/RagA G protein conserved region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006762	Family	Gtr1/RagA G protein	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039397	Family	RagA/B	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11259	RAS-RELATED GTP BINDING RAG/GTR YEAST	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005764	Cellular Component	lysosome	Interproscan
GO:0009267	Biological Process	cellular response to starvation	Interproscan
GO:0010507	Biological Process	negative regulation of autophagy	Interproscan
GO:1990131	Cellular Component	Gtr1-Gtr2 GTPase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG26612.1 global RNA-seq network