Gene detail

Detailed information of RPACG26576.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG26576.1	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	tig00117919	231254	247071	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG26576.1

CGCCTGACCGCGGTCGAAGGCCGGCGTACCGTAGCTCGAGTGTCGTGTCGTAGTATCGTGACATATATTGGCCGCTGTTGATGAAAATATAAAGTTCACGACGTGTCGTGTCAGCGACAACCACGTGTGTGCTGCGGCCGGATCGGCGTGACTTAACGGAGACGCGCACAGTCAGTGTTATTCAGAGAAGCAAAGATGACGGAGCAGAAAAAGGTGATCAAGGTTGGGTCTAGGAAGAGCGAGCTGGCACTCATCCAGACTCGCAGCGTCATGGCGCAACTAAAGGAACTCTTCCCAGAAATAGACTATGAACTGATTACCATGTCAACGATGGGAGACAATATTCTTGACACTGCGTTGTCAAAGATCGGAGAGAAGAGTCTGTTTACAAAAGAGCTGGAGAAGGCTCTACTGGATAACACGGTTGACTTTGTCGTTCACTCCCTTAAAGACCTTCCCACAGTTCTGCCAGAAGGCATGGTCATCGGCGCAATTTGCAAACGTGATGACCCCCGAGATGCGTTGGTGTTGCATCCGTGCCTGGCGAACAACAATTATACTCTGGCCACTCTGCCAAAAGACAGTGTCATCGGCACGAGTTCACTGAGGCGTGCCGCCCAACTGAAACGGAGTTTCCCGTCCATCCAGCTCAAGGACATTCGAGGCAACTTGAACACGAGGCTACATAAGCTGGACAAGGGCAGTGACTATGACGGTCTGATCCTCGCTGTAGCTGGCATTGAGCGGATGGGCTGGCAAGACAGAATCTCTCGTGTCCTTGATCCTGACACGGAGTGTATGTACGCAGTGAGTCAGGGAGCAATGGCTGTAGAGTGTCGGGCATCAGACCCAGAAATACTGGAACTACTTTCACACCTCCATGACTACGACACGCTGCTTGGCATTATCGCAGAGAGGGCCTTTCTCCGGGAACTGGAAGGAGGTTGCAGCGTTCCCGTGGCAGTACGCTCAGAGGTGGACAACGACCAGCTGATGCTAAAAGGAGGCGTGTACAGTATTGATGGAACGAAAGCGGTAGTTGACATCATGACGACCAAACTGCCCGCTGAATGGGAGCCAATGTCAAAAAAGAGCACAAATGGAACAAAGCAGTTTTCTTGCGTGATAGCTGAGAACTTCTGTCAGGAAGCGCTTCAGAAATCGGAGGACCTCGGAGTGGCGTTGGCCAAGAAGATGATCAAATCTGGGGCAGGGGACTTATTATGGGCAGCAAAGAGGGAGACGGAAGCAGAGATCTTAAAGGCAAAAGCCCTGAAAGAGGCTGCAAAGGAAAAGGTGGTTGCAAGTAATGGAAATGCGAAAGTGGTGAAATCGTAGCAGTGGATGGTGACGTTTGCTATGTTGCGGCATTGTTGCAGTTTTAAGGCAGCAGATTTCCCGGAGGGTGCAAGACGTTTCTTGTTTGAAGGAGAACGGAAGACGTCGGAAACATTACAGAGATCACCCGGGATGATTGCGATCATCCCAGGATAATTCGACATAAGAACCACAACTTATGTCTCATTTTGAGACATTTTAGTATTTCGGGAACATTAATGTATGCATACATTATTCCCACAATTGATGGCATCTGTTAATTTTTTACCCAAGTTAACGTCATCGGTGGTCCACAGTTCAATAACATAACCAAACACGTGGTTACTGACCAGTGTATATGTCCACTCTGTGATGAAAGGCAACACATTTATTGTGATTACGTTGGACAGAAAATCACAGATGCACATATGAAATTATCCTGTATTGAGTTGATGCTTGTGCAGCTACAACTAGTCATTTAAGTATTTTATGTCGACCCACAGCGTGTAGCAGTTGTGTTGGCTGTTTTTCATTTGCGGTTGTCGAGAAAGTTCCGGAAAGCATCAGAAGTGAAGACGGTTCCTCTGGAATATTGGGGAAAGTGTGATCAATGTTACAAAGCTACATACTGCATATATTAATACCAGATATTACACGTGGAATGGCCTACTTGTTGCGTCGGGATTTTCGAATGAGCAGAACACAGCATTCCTCACGATACATATCACTAAAACATGTTTAAGTGCATGTCCTTGTACAATATGAGCTATGCGAATGTTTTTACTTTATTACTTTTTCATGTTTTCTTGTATTATCTTACAACACAGTTCTTTCTGAGAATGATCAGATTTATTTAGTTGGATGTGATCCCTTTTGAACTTTGTGTATTTTTGTATTCAGGATGTGGTTAACATAAATCATACCAAAGGAATATAATCAGTTATATTACTAAAATACTCTGTGGGTTTGGTTGAACAATGACGTTTTTAAATCAGATTATTCTAAAGAGCTGCAATACCAAAGCGTCGAATGATATTGTGTGAATTGTGTTAATTGACGGCAGAGAAGTAATGAGGTATTAAATGTGTTCAGGTTATTGCGTAAGTGTATATGTTT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00411	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001971	Family	Small ribosomal subunit protein uS11	Interproscan
IPR018102	Conserved_site	Small ribosomal subunit protein uS11, conserved site	Interproscan
IPR036967	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000028	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG26576.1 global RNA-seq network