Gene detail

Detailed information of RPACG26118.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG26118.1	FORMIN HOMOLOGY 2 FAMILY MEMBER	tig00117260	51730	105842	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG26118.1

ATGAACTTGTTAGGAGAGAAGACAGCGGTGAAAGGGACAGTAGACAAGGAAACCGAAAGAAAGTTGACAGGACGAAAGGAAGTGAAAGACAAGGTACCAAGGGAGAAGTCGACAGCAAATTTTGAGACGACAAAAATAACGAAGAAATACCAGACAAAAGGAAAAGACTCCCATGAAACAGAGACAGACAACAAACGTGCCCTAAGTGGTGTGCTGGTAGCCATTGCCAACACGCTGGAGGCATGCAAGAACGCATGCCGTGGCAACAAGCGGTGCCTTGCTATCGACTTCAACCCAGAAAAGAAAGTGTGTTGGATTCACGTTGATGAGGACAAGGCAGAGGTGTTGTTTGACCTTGTCGGGGTGAACCACTACAGTCTGGATCGCCGTTGTGCAAGCACAGACAACAAACGTGCCCTAAGTGGTGTGCTGGTAGCCATTGCCAACACGCTGGAGGCATGCAAGAACGCATGCCGTGGCAACAAGCGGTGCCTTGCTATCGACTTCAACCCAGAAAAGAAAGTGTGTTGGATTCACGTTGATGAGGACAAGGCAGAGGTGTTGTTTGACCTTGTCGGGGTGAACCACTACAGTCTGGATCGCCGTTGTGCAAGCACAGAATATCAGGAGACGTTCACTGAAGTAGACAACAAACGTGCCCTAAGTGGTGTGCTGGTAGCCATTGCCAACACGCTGGAGGCATGCAAGAACGCATGCCGTGGCAACAAGCGGTGCCTTGCTATCGACTTCAACCCAGAAAAGAAAGTGTGTTGGATTCACGTTGATGAGGACAAGGCAGAGGTGTTGTTTGACCTTGTCGGGGTGAACCACTACAGTCTGGATCGCCGTTGTGCAAGCACAGAATGTCAGGAGACGTTCACTGAAGTAGACAACAAACGTGCCCTAAGTGGTGTGCTGGTAGCCATTGCCAACACGCTGGAGGCATGCAAGAACGCATGCCGTGGCAACAAGCGGTGCCTTGCTATCGACTTCAACCCAGAAAAGAAAGTGTGTTGGATTCACGTTGATGAGGACAAGGCAGAGGTGTTGTTTGACCTTGTCGGGGTGAACCACTACAGTCTGGATCGCCGTTGTGCAAGCACAGCCATTGCCAACACGCTGGAGGCATGCAAGAACGCATGCCGTGGCAACAAGCGGTGCCTTGCTATCGACTTCAACCCAGAAAAGAAAGTGTGTTGGATTCACGTTGATGAGGACAAGGCAGAGGTGTTGTTTGACCTTGTCGGGGTGAACCACTACAGTCTGGATCACCGTTGTGCCAGCACAGCTGCGTGTGGTGATTTTGAGAAGCTGGAGGACAAAATGGCCTATGACGGAATTGAGCAGCTGGACATTACCACATTGGACGCCTGCAAGAAGCGGTGTTTGGACAACGCTACTTGTCTCGGTTTAGACTTCAGCTCGCTTGGCAAGTGCTACGTACACTTTGATGAGAAAGTTTTTGGCGATGTCTACCCTAGTAAAGGTGTCGACCATTATATACGCCAATATGACAACAAGACAGACAAGTATTGCTTAGCCTTGGACTTCAATAAGAGTGCTGCCATCTGGTGCTACCTCCACTTCACTGCGAAGAACCTGGAACGCTTGTTCAATGCAGAAGGCATCATTCACTACACTCGGGTGAAGTGCATCCCACCCACAACGGAATGCGTTGCGGACGTCACTATGGTTGTTGATAGTAGTGGCAGCATACAGCATTCCAACGTGGAAGGACGCAAGGATAACTATGACCTAATCAAAGAGTTCCTGTCCATGATGGTTGGACGAATGCGCATTGGGTCGCAGGAAACCCGCGTGGCAGCTGTGACGTACAGTAATTATGCCCAGGTGCGCATCCCACTGAATGAGTATTCTTCCCTTGCGCCGCTACAGAGAGCACTCCTGGACCTGCCGTACGCTGGAGGAAAGACAAACACAACCGGTGCTCTGCGGCTCGCACGCACGGAGGTGTTTAAGCAGGAGAACGGAGACCGCCCCAATGTGAAGAACATTATTGTGTTGATAACCGACGGATACACAACTGTAGAACAAGGCAAACTGAGTGATGAAGTGAAGAAACTGAAGAAAGCTGACATCACCGTGTTTGGTGAGTACCAACAACCCACAAATTAG

Transcript

RPACG26118.1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181	FH2	Formin Homology 2 Domain	Family	Interproscan
PF06367	Drf_FH3	Diaphanous FH3 Domain	Repeat	Interproscan
PF06371	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010472	Domain	Formin, FH3 domain	Interproscan
IPR010473	Domain	Formin, GTPase-binding domain	Interproscan
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR014767	Domain	Diaphanous autoregulatory (DAD) domain	Interproscan
IPR014768	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR015425	Domain	Formin, FH2 domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR042201	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR051425	Family	Formin Homology	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45725	FORMIN HOMOLOGY 2 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0016043	Biological Process	cellular component organization	Interproscan
GO:0030036	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030838	Biological Process	positive regulation of actin filament polymerization	Interproscan
GO:0031267	Molecular Function	small GTPase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG26118.1 global RNA-seq network