Gene detail

Detailed information of RPACG25945.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG25945.1	DNA LIGASE	tig00117119	152849	172032	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG25945.1

ATGGCGTTGCACGCTGAAGAAATAGTGTGGTATTCCACAAATTTCTACGAGAAATTACTTGAAGGCTGGGAGAGAGCTGAAACCAATACTGGCTGTCTCTACTACATCAACCACAAGAGGGAAAAGACACAATGGAACCACCCAATCTATGTAAAGATCATGGAAGAGCTGGCTGACATGGATGGCATCAAATATGCTGCTTACCGTACATCAATGAAGTTGAGGTTTCTACAGAAACGATTTCGCTTGGACTTGGTGGACATCCACGTCATCCGCAGCGTGTTTGAGCGTCACAGCTACGTGGGTCACATGGTTGACACGGTCATTGACAGTACTGCCCTCTACAGTCTGCTGGTTGATGTGTTTACGATGAGTCGCAAGGGCTCGGTGAGCAGCGTCATGAGTCAGCTAAATGCAGACACAGCGGCCGAGCTGCTGCTCAATCTACTTCTCAACCTCTATGACATTAACCGTACAGGTTGTGTGCGGGTGTCGGCAGTCAAAGTGGCTCTAGTCTTACTGTGTGCGGCTCGTCTCTTGGAGAAGTACCGCTACCTGTTCAGTCAACTGAGTGACCCAACCAATCACATGCAGCGCAAGGTGATGGGTGTCTTGCTGCATGACGTCATGCAGTTGCCAGAACTGCTCAATGAGGGGGCTGTGTTTGGAGGACTAAATGTGGGTCCCGCGGTAGACAGCTGCTTCCAATCAGCTTGGAATTCTGTTGGTATCACCGAGGCTGAATTCATTTCATGGATGTTGCTTGAACCGCAGACAATTGTCTGGCTACCCACAATGCACCGCCTCGCTGCGGCAGAAACGGTGAAACACGAGGCCAAGTGCAGTGTCTGCAAGATGTTGCCAATAGTTGGCTTCAGGTATAGATGTCTGAAGTGTTTCAACTACGACCTGTGTCAACATTGTTTCTTCACTGGTCGCGTCAGCAAGAAACACAAGAGTCACCATCCAACACAAGAGTACTGTCTCACGTCGTCTGTAAAGGAGGATACAAAGGCATTGATACGGACGATACGCAACAATCTAAACAAGAAGCACAGACACAGGAAGAAACCGCACTACCTGCCGATCTATGGCACAGACCAGCCCTACAGACCAGACGAGTTCCTTGATGAGCCCGTCGACCCGGAGACGACGCTGGGCCACTCACACAAGCAGGCACAGACAGCCTCGTCGCCACATGTGTCTAAATGTCTCCAGACAGACATTGCCGGCAAAAACATACAGGATGCCGGTGGTGTGAGAGAAGGGGTTGAAATGGAAGCCATGATCTACCAGCTGGAAGATGAAAACAGAGAGCTGTTGGATGAGTTGGAGCGTACCCAGAGTCGGTCTTACGTGTCCCACCGGTCCTCTCCGACTGGGTCCGACGGCGGCAAGGACTGGCTGGAGGAGGAGAATGAGAGGCTTGCGGCCAGGCAGGAGGTGCTGGAGGCTCACAACAGACAGCTTGAGCAGCAGCTCCACAGGCTCCAGCAGCTCGTCAAGGAGCGAGACGTCCTGATGTCACCAGTGACTGCCCCAACTGCCACCCCATCGCCATGCTACAGACTCCCCCCGGAGTCGTCCAATATGTTGGTGACTCCCTACCCCCTGCCACCAGCATATGGCAGACAGGGGGCGCCACCGACCCGCAGCACCCCGATTGTGGGGAGCTCTGCTCCACATCGTCTTATGCAGACACCTGGAGGAATATCAGAAATCTCGAACATATCGCCACTTGATAATCGCTTGCGTCATGCTTCAGTGACTGACATGACCCCTGGTGGAGGATCACAGAACTATGTGCTTGATGACGATACGACTCATGGTTTGACTGACCCGACACTAGGGCGCACTCGGTTCACCCTGCCTTCACCGCGGAGCTCTCATCGCTTCCAGGATGAGGAGGCGGAGCTACAAGCGATGATTGACAGGTTAGATGCCGTCTATCCCGACGACATGTCACATTCCACCTGTGAGACGACTGGCACAATGGCTGAGATGTATCGGGCGGCTGGACGCATCGGTGAGGCATTCTCCGAGTTTGTCGCCCCCGCAGCTTCCTACCCAGATGTGCAGCAACAGGAACGAAATAAGAATGAAGACGAAGACGTGAAGGAAACTGTTCGGCCAAATTGTGGTTCCGATTCCAACTGTCTTCCAAAAGACCATCAAGTAAACGGAAACACATCTGCTGACGACTGTTCGAGGAAGGATCCAGTTATCAGAAACTGTGTTTTGAGGGTGGATTCACCAAACCTCAGTTCCAAGGATTCCTCCCTTTCTGGCTGTGATGTCTCGGCCGAAGACAAACCTCCAGAGAAATAG

Transcript

RPACG25945.1

AGTTTGTATCGGGAGTGCGCGATGTAGTTGACTTAATTTGATCCCCCTGTGATCGGAGTTACTCCGAAGGATTTGCCGTTAACAATGGCGTTGCACGCTGAAGAAATAGTGTGGTATTCCACAAATTTCTACGAGAAATTACTTGAAGGCTGGGAGAGAGCTGAAACCAATACTGGCTGTCTCTACTACATCAACCACAAGAGGGAAAAGACACAATGGAACCACCCAATCTATGTAAAGATCATGGAAGAGCTGGCTGACATGGATGGCATCAAATATGCTGCTTACCGTACATCAATGAAGTTGAGGTTTCTACAGAAACGATTTCGCTTGGACTTGGTGGACATCCACGTCATCCGCAGCGTGTTTGAGCGTCACAGCTACGTGGGTCACATGGTTGACACGGTCATTGACAGTACTGCCCTCTACAGTCTGCTGGTTGATGTGTTTACGATGAGTCGCAAGGGCTCGGTGAGCAGCGTCATGAGTCAGCTAAATGCAGACACAGCGGCCGAGCTGCTGCTCAATCTACTTCTCAACCTCTATGACATTAACCGTACAGGTTGTGTGCGGGTGTCGGCAGTCAAAGTGGCTCTAGTCTTACTGTGTGCGGCTCGTCTCTTGGAGAAGTACCGCTACCTGTTCAGTCAACTGAGTGACCCAACCAATCACATGCAGCGCAAGGTGATGGGTGTCTTGCTGCATGACGTCATGCAGTTGCCAGAACTGCTCAATGAGGGGGCTGTGTTTGGAGGACTAAATGTGGGTCCCGCGGTAGACAGCTGCTTCCAATCAGCTTGGAATTCTGTTGGTATCACCGAGGCTGAATTCATTTCATGGATGTTGCTTGAACCGCAGACAATTGTCTGGCTACCCACAATGCACCGCCTCGCTGCGGCAGAAACGGTGAAACACGAGGCCAAGTGCAGTGTCTGCAAGATGTTGCCAATAGTTGGCTTCAGGTATAGATGTCTGAAGTGTTTCAACTACGACCTGTGTCAACATTGTTTCTTCACTGGTCGCGTCAGCAAGAAACACAAGAGTCACCATCCAACACAAGAGTACTGTCTCACGTCGTCTGTAAAGGAGGATACAAAGGCATTGATACGGACGATACGCAACAATCTAAACAAGAAGCACAGACACAGGAAGAAACCGCACTACCTGCCGATCTATGGCACAGACCAGCCCTACAGACCAGACGAGTTCCTTGATGAGCCCGTCGACCCGGAGACGACGCTGGGCCACTCACACAAGCAGGCACAGACAGCCTCGTCGCCACATGTGTCTAAATGTCTCCAGACAGACATTGCCGGCAAAAACATACAGGATGCCGGTGGTGTGAGAGAAGGGGTTGAAATGGAAGCCATGATCTACCAGCTGGAAGATGAAAACAGAGAGCTGTTGGATGAGTTGGAGCGTACCCAGAGTCGGTCTTACGTGTCCCACCGGTCCTCTCCGACTGGGTCCGACGGCGGCAAGGACTGGCTGGAGGAGGAGAATGAGAGGCTTGCGGCCAGGCAGGAGGTGCTGGAGGCTCACAACAGACAGCTTGAGCAGCAGCTCCACAGGCTCCAGCAGCTCGTCAAGGAGCGAGACGTCCTGATGTCACCAGTGACTGCCCCAACTGCCACCCCATCGCCATGCTACAGACTCCCCCCGGAGTCGTCCAATATGTTGGTGACTCCCTACCCCCTGCCACCAGCATATGGCAGACAGGGGGCGCCACCGACCCGCAGCACCCCGATTGTGGGGAGCTCTGCTCCACATCGTCTTATGCAGACACCTGGAGGAATATCAGAAATCTCGAACATATCGCCACTTGATAATCGCTTGCGTCATGCTTCAGTGACTGACATGACCCCTGGTGGAGGATCACAGAACTATGTGCTTGATGACGATACGACTCATGGTTTGACTGACCCGACACTAGGGCGCACTCGGTTCACCCTGCCTTCACCGCGGAGCTCTCATCGCTTCCAGGATGAGGAGGCGGAGCTACAAGCGATGATTGACAGGTTAGATGCCGTCTATCCCGACGACATGTCACATTCCACCTGTGAGACGACTGGCACAATGGCTGAGATGTATCGGGCGGCTGGACGCATCGGTGAGGCATTCTCCGAGTTTGTCGCCCCCGCAGCTTCCTACCCAGATGTGCAGCAACAGGAACGAAATAAGAATGAAGACGAAGACGTGAAGGAAACTGTTCGGCCAAATTGTGGTTCCGATTCCAACTGTCTTCCAAAAGACCATCAAGTAAACGGAAACACATCTGCTGACGACTGTTCGAGGAAGGATCCAGTTATCAGAAACTGTGTTTTGAGGGTGGATTCACCAAACCTCAGTTCCAAGGATTCCTCCCTTTCTGGCTGTGATGTCTCGGCCGAAGACAAACCTCCAGAGAAATAGGCAGAACTTGGTAGACACGAGTGCATAGTCAAAATACTGATAGACCTGTGATGTTGAACATTTGGTGTTAAGACATTAGACCGGTGTTTCGTTTCCGAATAGCGATCCTACAAGGATGTTCATTTCATCTATTATTACATCGTTGAATCATGAGGATAATCAAATCAGTTATAGTACCATTTAGTATGTCTGGTACTGATTAGTGAATGTACAAATCATTAGTTGTTATTCGTCTTGATCTCTATGGCAAACCCAGTTTGTGCTTACATGGCAAGTAATGTTTTTATTTATTCGATCCAGTGTTAGAGATGTATTTTTATCTGTGTAACCATGTCGCATACTTAAGAAATGCATGTTTGTTTTGACTGTACATAATTGTATAAAACCTTCTAGCATTCTGATGTGTTTTCCTAAAGAGGCAGACATACATTAAAGCAATTCTTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02877	PARP_reg	Poly(ADP-ribose) polymerase, regulatory domain	Domain	Interproscan
PF05406	WGR	WGR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004102	Domain	Poly(ADP-ribose) polymerase, regulatory domain	Interproscan
IPR008893	Domain	WGR domain	Interproscan
IPR036616	Homologous_superfamily	Poly(ADP-ribose) polymerase, regulatory domain superfamily	Interproscan
IPR036930	Homologous_superfamily	WGR domain superfamily	Interproscan
IPR050800	Family	ADP-ribosyltransferase diphtheria toxin-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10459	DNA LIGASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003950	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0035861	Cellular Component	site of double-strand break	Interproscan
GO:0070212	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:1990404	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG25945.1 global RNA-seq network