Gene detail

Detailed information of RPACG25883.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG25883.1	PEPTIDOGLYCAN RECOGNITION PROTEIN	tig00117085	560408	573547	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG25883.1

CGCCGTCTCGCCAAGAAGAAAGGAAACGGCGAAGATGTCGAAAATTATGCAGGAACTAGGTTTTGCGGTTGCCAGTCCTCCAAATCAAAATGGGGTCCAGCAACAGATGCAAATGGGATATGGTGATGCTTCTCGATTTGGTTCAGTCGGGCGTTTGCACACACCCCCAAATACACATGTGAATGATACTAGCCATGCGGGCAGGGTTTTCGAGGCCAGTTGACCCGCGAAAGCGCCCTAAGCTTCTGCCCCGCGACTCAACTGGCACAGATGAGCCTCAACTACTCGGCCCACAGGCCGATCAGATCGGGCCAGTGTTGCCCGGGCCGGGCGCGAAGAAAGAAATGAAACCATTCCAGCTGCCAAAGCTGTCATCTTCTCAACAAGATGCCATTCAGAAGGCAAAGAAATATGCAATGGAACAGAGTATCAAAAGTGTACTAGTCAAGCAGACGATAGCTCACCAACAACAACAAATGATGAACTTCCAGAACACAGTCCAGAGACAACAGGCGCTGGCGCTTATGTGCAGGATATATGTCGGGAGTATCAACTTTGAAATCAAAGAAGACACCATCAAGCAAGCGTTTCTTCCATTCGGTCCAATCAAAAGCGTCAACCTATCTTGGGACCCAATCACAAACAAGCACAAAGGGTTCGCTTTCATCGAATATGACATTCCCGAGGCAGCTCAACTTGCACTCGAACAGATGAATGGAGTGATGATTGGAGGAAGGAACATCAAGGTGGTTGGCCGCCCCAGCAACATGCCACAGGCGCAGCCAATCATAGAACGTCTGGCAGAAGAGGCAAAACAATACAATCGCATCTATGTCGCATCCATTCATCAAGATCTTACAGAAAACGACATACAGAGTGTATTTGAAGCATTTGGTAAAATTATTGCATGTCAACTGGTGCCAGACCCAGCAAGATCCGGCAAACACAGAGGTTATGGCTTTATTGAGTACGAGACGGGTCAGGCGTCGCAAGACGCTGTAGCATCTATGAATCTGTTTGACCTCGGTGGGCAGTTTCTGCGAGTTGGAAAGGCTGTAACGCCCCCGAATGCGACCCAAGCCCCAGCATGTCCTAGCTCCATGCCAACGGCTGCAGCTGTAGCAGCGGCTGCCGTCACTGCAAAGATTACTGCCATGGATGCCATTAACCAAGTCACAAATCCGGGGTCAGCACCGACAACGCCAAAGCGCCAAGCATTAGGTGGGACATTACCACAGGTGCCGCCACCTGGTGTTGTCATTCCACAACTACCTGCTGTGGGGACAACAGGATTTGGTCCTATTGTACCTTCAGCTGCTGTAAAACCGCCGCCAATAGTCGTTGCACCAACATTAGGGGCACCTGTAGCACTGGCCCCTCCTGGAGTGGCTCCTGTGCCCCCACCAGGCATAATTACCCCTGTCTCACTGAGGGGAGTGTCTCCTGTCATACCCAGCCCTGTTGGTGTGGGACCAGTGCCTCCTCCCTCCACACTGCCTGCATCTATACCAATGCCTGAGCCAATGAAGTCTGCTGGCGCCACTCACGAGTTAACGGAGGCCCAGAAGAAGTTGGTTGCAGAAGACCCAGCACAGACACTTGACCAGCAGGAAAACATGAAGATCAGCGGCAGCAATGCGAGACATATGGTCATGCAGAAGTTGATGCGCAAGTCAGAGTACCGCGTGATGGTGTTGCGTAACATGGTGGGCGTGGAAGACCTTGACGAGGAGCTGGAGAGTGAGGTGACAGACGAGTGCGGGAAGTTTGGCAATGTGAAGCGTGTGATCATCTACCAGGAAAAACAGAGTGAGGAAGATGATGCCGAGGTCATCGTTAAGATCTTTGTGGAATTCTCAAAGCAGTCGGAAATGGAAGCTGCAATAGCATCGCTAAATGGCCGCTACTTTGGGGGTCGCATTGTGAAGGCACAGCCCTACGAACCAGACCTCTACGAGAGCAATGATCTGTCTGGATGATAGCGTAGACGTCCATCAAGCAGAGCTGTGTTCTAGTTCGTCAGTGGCCGTCACTGGGGGACGTCATCACGACAGTGAAGTAAGAGACATCTGACCTCGATAGAATGATGGTGATATCCAGTGTGAATAGATGCATGTTCCAACGACGAGTAGGTGCATGGGTTCAACTACTTGTGCTGCTCACAAGACAAGTCACTGCCATTATTGTGGCTTGTGCATCTAGGGAAACCTTCATATTTGTCAGCTTTACAAAATTTCAATATTTCACGGGATACCAATTCCAAAAAGAGTGTTTTTCCAAAAAATATATTAATAACCACTCATAATTTGAGGCTTTGCCAATAAAACCACTGCATTTTTGCAGTACATCGTGCAACAACATACAATTATCACTACTGATGTTTTGTACAGTTGACAAAGTCAGTGTTGTGTATATGATTTAGTTGCTTTTATTCCAATTAATTCTGTTTTTGTGAGCTGCCCAGCTAAGATATATAAATGCGATGTTATATATATTTGTGGCTACCAGTTGTTGATGCAGCATGTGGGGAAGAAAGCAGCCGGTCTCTTCATTCTGTTATTGCAGGACTAAATTAATGTTGGGGGCAAACGACATTCATGTCATGTTTGTACCCAAATCCTGGTGGGTTAATGATGTGTTTACATGAAATGTGATTTTCAAGACATGAATGGGGCTGTTCAAGACATGAATGGTACTGTTCAAGACATGAATGGGGCTGTTCAGGACATGAATGGGGCTGTTCAAGACATGAATGGGGCTGTTCAGGACATGAATGGGGCTGTTCAGGACATGAATGGGGCTGTTCAGGACATGAATGGTACTGTTCAGGACATGAATGGTACTGTTCAGGACATGAATGGTACTGTTCAGGACATGAATGGGGCTGTTCAAGACATGAATGGGGCAGTTGAGGTGGCGTGGCGATTTTGTGACGAGTCATGCTTTACTCAATTCTGTGGCTACCCTGTATGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01510	Amidase_2	N-acetylmuramoyl-L-alanine amidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002502	Domain	N-acetylmuramoyl-L-alanine amidase domain	Interproscan
IPR006619	Domain	Peptidoglycan recognition protein family domain, metazoa/bacteria	Interproscan
IPR015510	Family	Peptidoglycan recognition protein	Interproscan
IPR017331	Family	Peptidoglycan recognition protein, PGRP-S	Interproscan
IPR036505	Homologous_superfamily	N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11022	PEPTIDOGLYCAN RECOGNITION PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0008745	Molecular Function	N-acetylmuramoyl-L-alanine amidase activity	Interproscan
GO:0009253	Biological Process	peptidoglycan catabolic process	Interproscan
GO:0042834	Molecular Function	peptidoglycan binding	Interproscan
GO:0045087	Biological Process	innate immune response	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG25883.1 global RNA-seq network