Gene detail

Detailed information of RPACG25882.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG25882.1	ADENINE DNA GLYCOSYLASE	tig00117085	535363	560171	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG25882.1

TTCACCTCGTCTGAACGTGTGCAACAATACCATGGATTTGTGTCAAGAAATGTGAACATTTTGCGCAACTGTCCCAGCCTCCTGTGGCAGCTTGCCATCAATGAGCCAGAGGACACCGCCCCAGCCCGAGACGTGACCCAGTTGTTGGACACCGCCACGTTACATGCGTCTCTCATGGAGCAGCTCAACAAACCCACGTTGACCAATCCTTGTCTACTCACTCTCTCAGACCTGACACAGGCTGCTACCTGCGTGGCCTTATCTGCAGACAGCCAGCAATTGGTATGTGGCTCACAGGATTGTTCTGTGAGACTGTACCACACAGCAACAGGGAAGGAGATGCGCCGTTTCCAAGGTCACTCAAATGAAGTGACAGACGTATGTTTCGTTGGTGCAAATCGACTCTGTTCTGCCTCAGTGGATGGCACCCTCAGTCTGTGGGACACGCACATTGGACACAGAGTGGCTGTCATCAAGGCCCACAGACGCCGTGTCACTGCCTGCGTCACTGACCGGTTAGCCCAGGTCATTGCGTCCACCTCTTGGGATGGCACGGTCAAGTTTTGGCGTGCAAGAGACGGAAAAGCTGAAACTGACCTTCCAAGTCGGGGATGTCCAGTCAACTGTGTGTCCTTCCACCCGGACGGTCAGTCAGTCATCACAGGGAGTTGGGATGCAGCACTGTGTATCTGGGATGTCTCCTTGAGGAAGAGAAAGGCTGTGTTGCGAGGTCACTCATCCTCTGTCCGGTCTGTGTCATTCAGTCCATCAGGAGAACATGTAGCATCTGCTTCCCTGGATGGGGAGGTGAAGTTGTGGACAGCAGCCAGTGGCACTCAAATTGGCAATCTTAATTGTCACACTCGTCCAATCAACAGTTTGACATTCTCTCCATCTGGTGATCACCTTATCACCGTATCAGACGACCAGAAGGTCAAGATTTGGTCAGGAAGATTGGGTCGCAAACTTCGCACCCTAGGTGGGGAGAATACCAGCCCTGCCCACTGCCTCGCCCTTCATCCTGGTGGTGAAATGGTTGTCGTTGGTTACCATGATGGGAAAATACGCATGTTTGACTGCCTTACAGGTGTCCTCTGGTGCGAGTTGGAAGTGCACGCCGCCACAATCAACTGTATCAGATTCAACAAAACTGGCACTCACATTCTGACAGCGTCACATGACAACACAGCTAAGATTGTGAAAGTGAAAGCAAACAGCGAGGGCCAATCAGAAGTGGTGTCTTGCCTTGACCACAGCGCTGCTGTGCTGTCAACAGCATATGGAGGCAAAGTGATAGCCACCACATGTGAGGACTCAACTGCTTTCCTCTACCTCATCCAGGAGAAGGAGGAGGAGGAAGAGGAACTGGGTCTGATGCACATTTTCATGGAGCAGGTCTGTCAACAACAACAAGATGTCTGTCAACAACAACAAGATGTCTGTCAACAACAACAGTTTTCTCAACCGAAGAATGGATTCGCGTCTCCACTTGCGGAGTTGGTGGGACATGACGATGCGGTCACGGCCTGTTCATTCAATGCCAATAACACCAAGCTTGTGACAGCCAGTCGAGACAGAGGTATCTTTGTGTGGGACGTACCCTTCACTACCTGGGGACGCCGAAACTTGAGACTGCAGCCCACACAAGTACTGCGGGAATGTCATGCAGATTGGATTAATGACTGTGTCTGGTCTAATACCTCCAACTTCATACTGACTGGATCAAATGACTGTAACATGAAGATATGGGACATGAAGAAGGAACAAGAGAAAGCATGTCTAACAGGCCATTCATCCACAGTGAACTCTCTCGCCTTCAGTTATGGCTGTGTGGTTTCTGCAAGTTCTGACAGCACTGTCAAAGTGTGGTCGCACCAAGGAACACTCATCACTACCCTGATAGGTCACAAATCAAGGGTCAACAGCTGCGACCTCCATGTTACTGTCACCACTAATCAAGGGTTTGCAGAAAACACAACCGAGAGCAGTGATTGGGCGACAATGATTGAGGAGGATGAGTGGAGGAGTGAACATGACAAAGTGAAACTGGACAAGACGTCAGTGCGAGTGGACAACGTCATTGTGGCCTCCTGCTGTGACGACGGACAGGTGCACCTGTGGCAGCCATTACAGAGTGACCAGCTGGCTTGTCTCACTGGACACTCTCACCGAGTTGTCTCCGTGGCGTGTTCATCGAACGGCATTATCTGCACAGCTGCTCTCGACTGTACTGTAAAAGTTTGGCAGCCCCACCTGGCGACCATTAATGACAACATTGGCCATGATGCCGAAGTTACATCTCTGGCCTATTCACCAGGGGGCGCCTGGGCTGTGTCTGCCAGTCGTGATTGTTGCATCAAGCTGTGGAATTCGAGCAGTGACATACAACAGGACACTGCAGACAAAGTCAACCAGCGTGACAACGTCCCATCTTGTCAACTCACTGTGAAGGCTCACACCAAAGCCGTCACTGCCGTGTGCTTCATAGCTGCACAGACATTTGTCACCGGGTCCGATGACGCATCACTGTCAGTGTGGACCATCTCAAACATACGCCAGAGGCCAGTCATCAGGAAGCAACATCATCGAACAGCCACAAGCCCTGTGACATGTCTGGTTCATACACCAGAGGGGGCTTCAGGCCACGGCATTGTTTCGAGCCACTGGGACGGCTCCGTGTGTGTTCACAACCAGAGCCTCCAAGTGATCCATACACAGAATCCACATTCAGACCCAATACTTACAAGTTTGTATGTTCCAACCCCGTCAAACTTTGCCTTCATCACTGGCTCCATGGATGAAAATATTGCTTTCATCAACTGGATGAAGAAAACATCGACATGTCAGATTCGACACAACACTGCTGAAGACAAAGGTCGCCCAAGTAAGAATTGGATCTGTTGCATGGCAGTTGATCTGGGTAAGGATGGCACAGTCTACGCAGGCGACTCCCACGGACAGATGAGTAGACTGGAGAACTGGCAGCTCGTGCAGACAAAGAAGATTCACTCAGCGGCTGTGACAAGTTGTGTATTCAGCCGAGACACACTGTTCACTGCATCGTTCGATGGCACGATCAAAATTTGGACAGCACAGTTACGTCAGATTGGCCAGTTCCACTGCACATCTGCCGTGATGACAATGGTGGCGACACCTAGTGACCATCACCAGAGGCTTATGTGCGGAGATTATCTTGGAAACATCATCTTCTTGAAATGGATCAATTAG

Transcript

RPACG25882.1

GTTCACCTCGTCTGAACGTGTGCAACAATACCATGGATTTGTGTCAAGAAATGTGAACATTTTGCGCAACTGTCCCAGCCTCCTGTGGCAGCTTGCCATCAATGAGCCAGAGGACACCGCCCCAGCCCGAGACGTGACCCAGTTGTTGGACACCGCCACGTTACATGCGTCTCTCATGGAGCAGCTCAACAAACCCACGTTGACCAATCCTTGTCTACTCACTCTCTCAGACCTGACACAGGCTGCTACCTGCGTGGCCTTATCTGCAGACAGCCAGCAATTGGTATGTGGCTCACAGGATTGTTCTGTGAGACTGTACCACACAGCAACAGGGAAGGAGATGCGCCGTTTCCAAGGTCACTCAAATGAAGTGACAGACGTATGTTTCGTTGGTGCAAATCGACTCTGTTCTGCCTCAGTGGATGGCACCCTCAGTCTGTGGGACACGCACATTGGACACAGAGTGGCTGTCATCAAGGCCCACAGACGCCGTGTCACTGCCTGCGTCACTGACCGGTTAGCCCAGGTCATTGCGTCCACCTCTTGGGATGGCACGGTCAAGTTTTGGCGTGCAAGAGACGGAAAAGCTGAAACTGACCTTCCAAGTCGGGGATGTCCAGTCAACTGTGTGTCCTTCCACCCGGACGGTCAGTCAGTCATCACAGGGAGTTGGGATGCAGCACTGTGTATCTGGGATGTCTCCTTGAGGAAGAGAAAGGCTGTGTTGCGAGGTCACTCATCCTCTGTCCGGTCTGTGTCATTCAGTCCATCAGGAGAACATGTAGCATCTGCTTCCCTGGATGGGGAGGTGAAGTTGTGGACAGCAGCCAGTGGCACTCAAATTGGCAATCTTAATTGTCACACTCGTCCAATCAACAGTTTGACATTCTCTCCATCTGGTGATCACCTTATCACCGTATCAGACGACCAGAAGGTCAAGATTTGGTCAGGAAGATTGGGTCGCAAACTTCGCACCCTAGGTGGGGAGAATACCAGCCCTGCCCACTGCCTCGCCCTTCATCCTGGTGGTGAAATGGTTGTCGTTGGTTACCATGATGGGAAAATACGCATGTTTGACTGCCTTACAGGTGTCCTCTGGTGCGAGTTGGAAGTGCACGCCGCCACAATCAACTGTATCAGATTCAACAAAACTGGCACTCACATTCTGACAGCGTCACATGACAACACAGCTAAGATTGTGAAAGTGAAAGCAAACAGCGAGGGCCAATCAGAAGTGGTGTCTTGCCTTGACCACAGCGCTGCTGTGCTGTCAACAGCATATGGAGGCAAAGTGATAGCCACCACATGTGAGGACTCAACTGCTTTCCTCTACCTCATCCAGGAGAAGGAGGAGGAGGAAGAGGAACTGGGTCTGATGCACATTTTCATGGAGCAGGTCTGTCAACAACAACAAGATGTCTGTCAACAACAACAAGATGTCTGTCAACAACAACAGTTTTCTCAACCGAAGAATGGATTCGCGTCTCCACTTGCGGAGTTGGTGGGACATGACGATGCGGTCACGGCCTGTTCATTCAATGCCAATAACACCAAGCTTGTGACAGCCAGTCGAGACAGAGGTATCTTTGTGTGGGACGTACCCTTCACTACCTGGGGACGCCGAAACTTGAGACTGCAGCCCACACAAGTACTGCGGGAATGTCATGCAGATTGGATTAATGACTGTGTCTGGTCTAATACCTCCAACTTCATACTGACTGGATCAAATGACTGTAACATGAAGATATGGGACATGAAGAAGGAACAAGAGAAAGCATGTCTAACAGGCCATTCATCCACAGTGAACTCTCTCGCCTTCAGTTATGGCTGTGTGGTTTCTGCAAGTTCTGACAGCACTGTCAAAGTGTGGTCGCACCAAGGAACACTCATCACTACCCTGATAGGTCACAAATCAAGGGTCAACAGCTGCGACCTCCATGTTACTGTCACCACTAATCAAGGGTTTGCAGAAAACACAACCGAGAGCAGTGATTGGGCGACAATGATTGAGGAGGATGAGTGGAGGAGTGAACATGACAAAGTGAAACTGGACAAGACGTCAGTGCGAGTGGACAACGTCATTGTGGCCTCCTGCTGTGACGACGGACAGGTGCACCTGTGGCAGCCATTACAGAGTGACCAGCTGGCTTGTCTCACTGGACACTCTCACCGAGTTGTCTCCGTGGCGTGTTCATCGAACGGCATTATCTGCACAGCTGCTCTCGACTGTACTGTAAAAGTTTGGCAGCCCCACCTGGCGACCATTAATGACAACATTGGCCATGATGCCGAAGTTACATCTCTGGCCTATTCACCAGGGGGCGCCTGGGCTGTGTCTGCCAGTCGTGATTGTTGCATCAAGCTGTGGAATTCGAGCAGTGACATACAACAGGACACTGCAGACAAAGTCAACCAGCGTGACAACGTCCCATCTTGTCAACTCACTGTGAAGGCTCACACCAAAGCCGTCACTGCCGTGTGCTTCATAGCTGCACAGACATTTGTCACCGGGTCCGATGACGCATCACTGTCAGTGTGGACCATCTCAAACATACGCCAGAGGCCAGTCATCAGGAAGCAACATCATCGAACAGCCACAAGCCCTGTGACATGTCTGGTTCATACACCAGAGGGGGCTTCAGGCCACGGCATTGTTTCGAGCCACTGGGACGGCTCCGTGTGTGTTCACAACCAGAGCCTCCAAGTGATCCATACACAGAATCCACATTCAGACCCAATACTTACAAGTTTGTATGTTCCAACCCCGTCAAACTTTGCCTTCATCACTGGCTCCATGGATGAAAATATTGCTTTCATCAACTGGATGAAGAAAACATCGACATGTCAGATTCGACACAACACTGCTGAAGACAAAGGTCGCCCAAGTAAGAATTGGATCTGTTGCATGGCAGTTGATCTGGGTAAGGATGGCACAGTCTACGCAGGCGACTCCCACGGACAGATGAGTAGACTGGAGAACTGGCAGCTCGTGCAGACAAAGAAGATTCACTCAGCGGCTGTGACAAGTTGTGTATTCAGCCGAGACACACTGTTCACTGCATCGTTCGATGGCACGATCAAAATTTGGACAGCACAGTTACGTCAGATTGGCCAGTTCCACTGCACATCTGCCGTGATGACAATGGTGGCGACACCTAGTGACCATCACCAGAGGCTTATGTGCGGAGATTATCTTGGAAACATCATCTTCTTGAAATGGATCAATTAGTTCATTTGGAATGAACATCAACATGTTCTCAGTACTAACAAATGGGCAAAACGGGTACGGTTCAATGTGAAGCTATGGATATCAAGTCTGCAATCTTCAATCAACTTACCTCTGTTGATTTTGAACACCTGTCATCATTCGTTGCCCATGTGATATCTTTTTGAGAATTTCTCAATTTATTATATATATATATATATATATATATATCTCGAGTAAATGTGTATTAAAATCATGAAATCGGCTCACCATATATAAATATCTCTTTAACTCAATACATTTTATCAGCTGATGAGTTGTTTATGAGGAAACTCATCCCCAAACCACTGATTGTACTGTACGGTTCTTGTACACATAACAGAAATGTAACTATTGACAAATGAATACGACCAGACAGAGTTCCACTAGCTGGAGCAATCTTGTAAACTACAGGCAAATCTATTGCTATACGTGGTCATTGTCTGGTCAAGATGTTTTACCTGTCTTACTGTCGTAGTCTTTCAATACAAAATATCAACGCTTATAAACATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10516	SHNi-TPR	SHNi-TPR	Repeat	Interproscan
PF13181	TPR_8	Tetratricopeptide repeat	Repeat	Interproscan
PF14815	NUDIX_4	NUDIX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003265	Domain	HhH-GPD domain	Interproscan
IPR003651	Conserved_site	Endonuclease III-like, iron-sulphur cluster loop motif	Interproscan
IPR004035	Binding_site	Endonuclease III, iron-sulphur binding site	Interproscan
IPR004036	Conserved_site	Endonuclease III-like, conserved site-2	Interproscan
IPR011257	Homologous_superfamily	DNA glycosylase	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR015797	Homologous_superfamily	NUDIX hydrolase-like domain superfamily	Interproscan
IPR019544	Domain	Tetratricopeptide, SHNi-TPR domain	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR023170	Homologous_superfamily	Helix-hairpin-helix, base-excision DNA repair, C-terminal	Interproscan
IPR029119	Domain	Adenine DNA glycosylase, C-terminal	Interproscan
IPR044298	Family	Adenine/Thymine-DNA glycosylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42944	ADENINE DNA GLYCOSYLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000701	Molecular Function	purine-specific mismatch base pair DNA N-glycosylase activity	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0006284	Biological Process	base-excision repair	Interproscan
GO:0006298	Biological Process	mismatch repair	Interproscan
GO:0016798	Molecular Function	hydrolase activity, acting on glycosyl bonds	Interproscan
GO:0032357	Molecular Function	oxidized purine DNA binding	Interproscan
GO:0034039	Molecular Function	8-oxo-7,8-dihydroguanine DNA N-glycosylase activity	Interproscan
GO:0035485	Molecular Function	adenine/guanine mispair binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG25882.1 global RNA-seq network