| Gene ID | Annotation | Contig | Start | End | Strand |
|---|---|---|---|---|---|
| RPACG25731.1 | COLLAGEN ALPHA | tig00116954 | 17400 | 29272 | + |
| CDS | |||||
| RPACG25731.1 | |||||
| Transcript |
| RPACG25731.1 |
| Protein |
| RPACG25731.1 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15140 | DUF4573 | Domain of unknown function (DUF4573) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027856 | Family | Protein of unknown function DUF4573 | Interproscan |
| IPR050149 | Family | Collagen superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005615 | Cellular Component | extracellular space | Interproscan |
| GO:0006910 | Biological Process | phagocytosis, recognition | Interproscan |
| GO:0030169 | Molecular Function | low-density lipoprotein particle binding | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| GO:0038187 | Molecular Function | pattern recognition receptor activity | Interproscan |
| GO:0062023 | Cellular Component | collagen-containing extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
| 1. Expression trend for RPACG25731.1 global RNA-seq network |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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