Gene detail

Detailed information of RPACG25384.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG25384.1	EGF-LIKE DOMAIN-CONTAINING PROTEIN	tig00116682	659148	665854	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG25384.1

MKALCKGKSESRSQASTKRNRLLVDAAASKSPSDLSSVCRRFPLLLWIFSFALVTHSQELHHDCPSMPPVYQVFCGNPSNPSDCLLEQWVCDDKVDCSTGLDETDATCRGADACRDVTCQNGASCIAFPAVTHETVAYAVCKCSAGFTGQYCEVELMPVAIVVPEPNPHVCRPNPCWNGVCTPLSRGFHCACRPGYTGNICDSGIDVCTSWPCFNGGTCYELEAEFRCFCRGGFAGRQCNLEIDECTSQPCVNGASCHDGVNGFTCECLPGFSGRQCDVEVNECESMPCDTMDGSRCIDRVDGYRCDCVASRAGSHCERRQLCEKGDPCRNNGVCYPASSAGELFCYCLPGFTGHFCETNLDDCGSRPCGVYGRCVDGVQSYKCLCQTGHTGIHCDATIDPCEPNPCHNEGHCCRQGKGWCTTRLPWPHFECYCATGYTGSLCERKLNPCSPDPCLHGGLCNVVLDDYLCTCPLIFTGVHCETPIPCASNPCLNDATCREQNETFKCECSAIYHGRYCENIAACLSQPCQNGATCILLDHGANYSCECGPAWSGGHCETFLSCSSGPCLNGGMCTDLEQSDYQCACSSNFTGERCETFLPCVGTPCHNGGTCHVHGITYKCDCPFDHTGQQCDMFLPCASDPCQNTGQCMAASGQFQCVCTDSYKGVLCDTYIPCSSSPCYNNGTCTDDNSRFHCDCSISYTGVTCEQFLPCALTPCQHNGQCLATNNTFSCACTPAFTGIRCQYFRACTSGPCRNGGSCSDQSTGGFSCTCSSLYTGRLCETAIICSPDPCFNGGVCIGSEETFTCDCPPLYKGVRCETYDTCSEKPCHNGGSCILEYTGEYRCQCTPAYTGRHCDTYLFCSSAPCVNGAACIEISDDYACNCSNVFGGRNCEVPLPCGSNPCQHGGVCVASGATYACQCAIGFNGTFCEVVLPCASNPCMQGDCIDIGGTYKCDCGEKYTGERCEVLLVCDHTTCIRGECRQLDNATVCACHAGYIGTFCEHKVQPCDSGPCKNGATCRNEVDTGQFVCECPPQFSGRLCETRMKPCDSSPCFHSGHCVNTQTTFLCTCQRLYTGVLCESMVGLCDSEPCHNNGRCVEDGHNVTCLCRPPFTGLLCEDEIKSCKVNPCEHRGTCHSDSLGVFCSCSDNYEGIFCQLRKGVCLPSPCLHGGICWQVKEQAACDCTKGWKGRYCGVAVMGCVPNPCNVGNCVEGNQGQLQCACPPGWLGSRCQNRNPCQSSPCQHSGTCVALEHGFRCVCAATYTGRICENALPACISRPCLNGAQCYDGGSTTAFSCFCAAGYTGMRCDINLDDCADNKQCLHNATCVDLIGGFRCDCSVGFSGPFCGLRDNCLTTPCYGGATCVNVPNLKYSTDFSCVCPPLYSGAICQQYDFCSSYPCQNQATCTNEPTGFRCTCTSQYTGTVCEREVVGCKGVTCSGHGACVPEGVYGHACHCDTGYSSRDCITAACDSQPCLHDGLCHMTDSGRGYVCECVTSWAGLNCETKTQTISPQFSGSSFMHFGHVARTASTTSLDVLLWAQEGLGLIFYSSQYPGRVSVGDFIALGLQNNIVVLYVNLGSGVLTLRGSAIPLQAWVTIQVTRNGQYVTLTSNGKLATGRTPGMKSGLKITSDLWVGGVSSSIYLPGEVKFEKGFIGCMQHVKFGAAHPALLPWATTIGTQDISSCQHNLCVGVPCHNGGLCQLASSVQFICLCHLGYTGETCRTVSQPPEIVSFTKWSYLTATDVLHPSQELSASLRIRPSNNSGLILFNGEGNDFFAIYLQDKRIVLTYDLGSGVATLTSEPLSHGQWHTVMVTLVQRRATLQVDSGHISRTVSPGTSSQLQTARLTYLGGVAQTVRLPRALPLTTGFIGCIRRVTLQGTPFRLSTASGGYGATPCYVPPCDDHQCTSGSTCRADSTASDGYACLCPFGITGVLCEMTVCEALPFSQRCQNAGSCTVDHQGNAKCVCPLPYTGATCTDGLHFTIAGFSQDSYLTYSSSQFIRNSSFGVEIVFRSSASDGLILWIGKTPGDFLSLCLTHGKLEFRLDLGGGTGVISCAVARVESSNWILVRLLQSHTQMTMEVTDHNGVKNVYNYSLSAGSDTHLDVSDSHLYVGGVSLKVSTVETGLTGCVAQLRAARLNDRWKTINLQQDALAGVGITPCLV

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF00054	Laminin_G_1	Laminin G domain	Domain	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF12661	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR002172	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR013032	Conserved_site	EGF-like, conserved site	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR051830	Family	Neurogenic locus notch homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG25384.1 global RNA-seq network