Gene detail

Detailed information of RPACG25064.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG25064.1	LUPUS LA PROTEIN-RELATED	tig00116480	1375315	1434400	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG25064.1

ATGATGGCTTCCGATGTCTCCCCACTGGCCATTGAGCGGTCTACACTGCATAGGAGCTCAAGTATGCAGACCTACATGGTGCGTGTGTTCCTCGGTGCCCTCAGTGACACGATGGAGTTCATTTGCATCGAATCGCTTAAGATGACGCGGGCTGATGACATCATCGAAGCTGCAGTAAAGAAGCTGCAGCTCGGCACGCCGTCCCAATATGAGCTCACAGAGAGCTTCAGTTCGGCCGGCCAGATCTGCAAAGAGCGCCACCTGGAGGGTGCAGAGAACCCCGTGCGGATACAACTGCTGTGGCCGCGTGTGAACGCGTCGTTGTTTGACGTCCACCCAACTGAATACCGTTTCTATTTACGCAAGAAGGACTCAGATCGTCGCTCCACAGAGTGGACCGAGTGCAACAAAACATACTCGATCCAGAATTTCCTCAGCACGTTCCTCGTGCAACCAAAGGATAAGGAATACCCAGATCTGTGCAACTTGCCAGATCTCAATGAGAACACGCTTCTGGATAATCTGAAGCAGCGCTTCGAGAAGAGCAACATCTACACATACGTTGGCTCCATACTCATTGCCGTCAACCCGTTTAGATTTTATCCAATCTACAACCCAAAATATGTTAAGCTGTATCAGAACCGGCGGTTGTGCGAACTGCCACCGCATATATTCGCGATAGCCGATGCGGCATACCACAAGATGTTGTCGGATCACATGGATCAGTGTATCGTGATCTCTGGCGAGTCGGGATCCGGCAAAACGGAAAGTACAAACTTGTTATTGCACCATCTGTCAGCACTGAGTCAGCGGGCAATCCGTGGAACAGGCATCGAACAGATGATTCTTGGCGCAGGACCTGTCCTAGAGGCGTTTGGCAATGCGAAGACACTCCACAACAACAATTCAAGCCGATTCGGCAAATTCATCCAAGTACAGTACATGGAGAATGGAATGGTGCACGGGGCCATTGTAGAGAAGTATCTGCTGGAGAAATCTAGAATAGTTTCACAGACAGAGAATGAAAGGAACTACCACGTGTTCTACTACCTACTGGCTGGCGCGACTTCTGAATTGAAGTCCACACTTGATCTCACAAAGCCATCCGACTACCTTTACCTGTCTCAAAGCAACTGTTACACGCTAGAGGGCATTGATGGAGAGCTGATTGACGAGGCCCACGAGTTTGTTCGTCTCTGCCAGTCAATGGAGATGGTTGGATTTTCCCGTGACACGCGCAAACGGGTCTTCAGTGTTCTGTCAGCCGTGCTACATCTGGGGAACATAGAACTTAAGAAGAAGGCCGGCCATGCTCACCATGAGGTTGTCACTGTGGAGAGTACTGAGGTTGTCAAGATCGTCTCAAATCTCCTCAAAGTGAAGGAGAGTACGCTGATTGATGCCTTGACGAAAAGGAAGACAATGGCGGGGGGCGAGGCGGTGGTCATGAACTACAACATGGCTGATGCAATGGCAACAAGGGACGCAATGGCGAAGTGTCTGTATGGTGCCCTCTTTGACTGGATCGTCCTCCAACTCAACTACTCCCTACTCTCCAAGAGGGATGACAGGGAACACAAGGGTAATAGTATCGGTGTGCTGGACATATTTGGCTTTGAGGATTTTGCACGCAACAGTTTTGAACAGTTCTGTATCAACTACGCAAACGAGCATCTGCAGTATTACTTCAATCAACACATCTTCAAGTTTGAACAGGAGGAGTACGTTAGGGAGGGCATTCAGTGGAAGAACATTGAGTTCATTGACAACACCGGCTGTCTCACACTCTTCTCGAAACGACGCACCGGACTTCTCTCCCTCCTCGATGAAGAGTGCAATTTCCCTGGTGGCACGAACGAGAGACTGCTGGCCAAGTTTCACGCGCAGCACCAGAGTAACTCATACTATGGCGTACCACAGATGAAAGAGGATGTCTTCCTCATAGTTCACTATGCCGGCCTCGTCAAGTACCATATACAGGACTTCCGAGAGAAGAACAGTGACCTGATGCGTCACGACATCATGGTGGTACTCAAGAACAGTTGCCTCTCCTTCGTTAGAGAGATTGTAGGTAATGACCCAGTCGCAATGCTACGATGGGCAATCATCCGTGCATTCTTCCGTGCATACTTTGCATTCAAGAATGGCGGAAAAAGGCAACATACAGCAGCTAAAGGCAAGAAAACACGTTCACCCGTGGCACACCGATGGCAGCTGCAACACCCACAGTTAGGTGGCAAGACCCCGACAACACCTAGTGGTGAAATGAATACGGGAATCCCCTCCCGCCGCGTAGTCGTCATTGAGAAGAAGAATGCGCGTGCGTCACGTGTATGTCCACCGGCACCGCGCCTCATGCACTCGCTCAGCACGAGTGACGTGCCGACGAAGCATGAACGGAACTCAACGCACAGCCGAGATTGCTATATTATGGTGGAAGATGTGAAGTCCATGCGACGGTCTAATCACGTTGTTACGAAGTGTAGGTCGTTCAAGCCAAAGATGCGACAAGTTAAGCAACTGCGAGACCTAAAGGCAATGAAGGCCGTAGTGGGCCGTTCACCAGTCGGTCCGCGGGCCAGCAAGAACAAGCCACCAAGTGTCAGCTGTCAGTTCAATTATTCGCTACAGAAGATGCTAATGACATTGAATGAGGCGAACCCATTCTTCATCCGGTGCATCAAATCTAACAAGGACAAGGCTCCGTGCACATTCGACCGTGACATCGTACTGCGCCAGCTGCGCTACACAGGCATGCTGGCGACGGTGAAGATCCGTCAGTCAGGCTACAACTACCGCCTCACGTTTGACGAGTTCATCCAGCACTACAAGATACTGCTGCCAGGGGGCCTGCTCAGCTCCCGGGACGACATCGGGTACTTCCTGCAGAGCCTCGATCTCAACCAAGAAAATTTCCAGATCGGCAAGACCAAGGTGTTCCTGCGTGAGGCGGAGAAGATGTTGCTGGATGACGCGCTGCACCGTGCCATCATGAAGCGCATCATCTGTATCCAGCAGTGGATGCGAGCGAGGCTGGAACGCAAACACTTCCTCAAAATGCGCTCCTCGGCCATCCTCATACAGCGAAACACCAGAGGGTTCCTGGCCCAGCGCAAGTTACATCATTTAAGACTCTGCTTCTATGCTGCCATTGCCATTCAGCGAATGTTCCGAGGGTTTATCGTCAGAAAGAGGCTGCAGAAGCAGAGCGAGGCTGCAACTGTGATACAAAAGACATACAAGGGATATTTGGCTCGTGAACAGTACAGAGTGTTGCTGGAGCAGCGAGAGAGGGAGTTGCGGAGGGAGGAGCGACTGCGGGAGAGAGAGCAGGAAAAGAGGGAGGCAGAGGAAAGGGAGAGGGTAGCAAGGGAGGAGAGGGAACGTGCGGAGAAGGAAGAACGAAAGAAGCACCACGTGGAGGCTGAGTGTGCAAGCCATGACACGGCCGTAACGAAGGTGTCTAGTCGAGAAGACGTTGCCTGTGATGAAGGCGTCTACAGCCGTGACTCAGAAGGGAGCAGTGGAATTCTAGATGATTCTGAGTCAGAGGTTACCTCACAAGGGGGCGCCACTAGTTCTGTGTCAACGCCGACAACATCACCACGACCCACAAAAGCTGTTCATCGGAAGAAGCGAGTGTCACCAATGCAGACAGGACGGACAAGGACACCGCAAATGTCACCACCACAGAATCGTCTCTCCTACACCGGCAGTGCGTCACACCTGAGGACCCAGGAAGGACCAAAAGACCTAGAGGTGTGTGTGTCACCAGTGGTCCTAAAGAAAGCTGCTTCGCTGGAGTTGCTCCAGACCTATCAGCCGCCGTGTGCAACTGTCGCAACAAAGAAACGCATCTCAGCGCCGCTCGCCAAACAAGAGTCAATCACAGACAGCGAGGACAACAACGACAAGGGTGTGGTACACCAGATCACCATGGAGCCCGAGTCACTTGACCTGAAGGTTCGACAGCGGGACAAGGGAGTACCAGAGGAGGACAGTGCAGCACCCCACTCAACCTTCAGGAGTCCGCTACATCGCGTCAAGAAGCACGTCTTCAAGAACCTTATCAGCGGAGACGACATCGAAAACATTGAGCCAGAAGAACTCCCAGTATGCACCTCTTCCTCCCCCGCTGCCCAGTGGGAGCGCTGCTCCTACTCCGATATTCTGTATGTGCCTGAGCCAGTCGCCATCGAGATGATTAGTGATGAGGAGAATGACGCCCCAGTAGCGTACATTCCAAAGGGCGTCGAACTGCGCATGCATGCGCCACGTAAGCACGACGAAGTGCGTTCGCTCATGAAGCGGACATCGCACAACTTCAGTCGCTACACAAAGAAGTCACTGCGGGAGTTGCTACGACAACAGCGTGAGTAG

Transcript

RPACG25064.1

ATGCGCACCATAAATCGTAGGTACATAGACTTGAGGAAGGTCCGGGGAGTTGCTGGGATATTTCCCTTTAGCTTTCCTATACGTTCTCTCCGCCGATTCTCTATAGCCGCTGTAGCGTCAGATGTACACCGCAATGATCACATGACAGGAAGTGGCTCCACCATGTGGGTTTCATCACAGCCAGCAGTCGAGTCAGAACCATGCAACATGAATGCGAGATGCTACGTGTGTGAAAGTGTAGGATCAGTGAAGGGAAGGACACCATGATTGCAGTCAATATCCGTTCACATGTTAGTGCAACAGCTGATTTTATTGATGATCATCAGAGAAATTTAGTTGGTTGTTGACGAAGCATATAATGATGGCTTCCGATGTCTCCCCACTGGCCATTGAGCGGTCTACACTGCATAGGAGCTCAAGTATGCAGACCTACATGGTGCGTGTGTTCCTCGGTGCCCTCAGTGACACGATGGAGTTCATTTGCATCGAATCGCTTAAGATGACGCGGGCTGATGACATCATCGAAGCTGCAGTAAAGAAGCTGCAGCTCGGCACGCCGTCCCAATATGAGCTCACAGAGAGCTTCAGTTCGGCCGGCCAGATCTGCAAAGAGCGCCACCTGGAGGGTGCAGAGAACCCCGTGCGGATACAACTGCTGTGGCCGCGTGTGAACGCGTCGTTGTTTGACGTCCACCCAACTGAATACCGTTTCTATTTACGCAAGAAGGACTCAGATCGTCGCTCCACAGAGTGGACCGAGTGCAACAAAACATACTCGATCCAGAATTTCCTCAGCACGTTCCTCGTGCAACCAAAGGATAAGGAATACCCAGATCTGTGCAACTTGCCAGATCTCAATGAGAACACGCTTCTGGATAATCTGAAGCAGCGCTTCGAGAAGAGCAACATCTACACATACGTTGGCTCCATACTCATTGCCGTCAACCCGTTTAGATTTTATCCAATCTACAACCCAAAATATGTTAAGCTGTATCAGAACCGGCGGTTGTGCGAACTGCCACCGCATATATTCGCGATAGCCGATGCGGCATACCACAAGATGTTGTCGGATCACATGGATCAGTGTATCGTGATCTCTGGCGAGTCGGGATCCGGCAAAACGGAAAGTACAAACTTGTTATTGCACCATCTGTCAGCACTGAGTCAGCGGGCAATCCGTGGAACAGGCATCGAACAGATGATTCTTGGCGCAGGACCTGTCCTAGAGGCGTTTGGCAATGCGAAGACACTCCACAACAACAATTCAAGCCGATTCGGCAAATTCATCCAAGTACAGTACATGGAGAATGGAATGGTGCACGGGGCCATTGTAGAGAAGTATCTGCTGGAGAAATCTAGAATAGTTTCACAGACAGAGAATGAAAGGAACTACCACGTGTTCTACTACCTACTGGCTGGCGCGACTTCTGAATTGAAGTCCACACTTGATCTCACAAAGCCATCCGACTACCTTTACCTGTCTCAAAGCAACTGTTACACGCTAGAGGGCATTGATGGAGAGCTGATTGACGAGGCCCACGAGTTTGTTCGTCTCTGCCAGTCAATGGAGATGGTTGGATTTTCCCGTGACACGCGCAAACGGGTCTTCAGTGTTCTGTCAGCCGTGCTACATCTGGGGAACATAGAACTTAAGAAGAAGGCCGGCCATGCTCACCATGAGGTTGTCACTGTGGAGAGTACTGAGGTTGTCAAGATCGTCTCAAATCTCCTCAAAGTGAAGGAGAGTACGCTGATTGATGCCTTGACGAAAAGGAAGACAATGGCGGGGGGCGAGGCGGTGGTCATGAACTACAACATGGCTGATGCAATGGCAACAAGGGACGCAATGGCGAAGTGTCTGTATGGTGCCCTCTTTGACTGGATCGTCCTCCAACTCAACTACTCCCTACTCTCCAAGAGGGATGACAGGGAACACAAGGGTAATAGTATCGGTGTGCTGGACATATTTGGCTTTGAGGATTTTGCACGCAACAGTTTTGAACAGTTCTGTATCAACTACGCAAACGAGCATCTGCAGTATTACTTCAATCAACACATCTTCAAGTTTGAACAGGAGGAGTACGTTAGGGAGGGCATTCAGTGGAAGAACATTGAGTTCATTGACAACACCGGCTGTCTCACACTCTTCTCGAAACGACGCACCGGACTTCTCTCCCTCCTCGATGAAGAGTGCAATTTCCCTGGTGGCACGAACGAGAGACTGCTGGCCAAGTTTCACGCGCAGCACCAGAGTAACTCATACTATGGCGTACCACAGATGAAAGAGGATGTCTTCCTCATAGTTCACTATGCCGGCCTCGTCAAGTACCATATACAGGACTTCCGAGAGAAGAACAGTGACCTGATGCGTCACGACATCATGGTGGTACTCAAGAACAGTTGCCTCTCCTTCGTTAGAGAGATTGTAGGTAATGACCCAGTCGCAATGCTACGATGGGCAATCATCCGTGCATTCTTCCGTGCATACTTTGCATTCAAGAATGGCGGAAAAAGGCAACATACAGCAGCTAAAGGCAAGAAAACACGTTCACCCGTGGCACACCGATGGCAGCTGCAACACCCACAGTTAGGTGGCAAGACCCCGACAACACCTAGTGGTGAAATGAATACGGGAATCCCCTCCCGCCGCGTAGTCGTCATTGAGAAGAAGAATGCGCGTGCGTCACGTGTATGTCCACCGGCACCGCGCCTCATGCACTCGCTCAGCACGAGTGACGTGCCGACGAAGCATGAACGGAACTCAACGCACAGCCGAGATTGCTATATTATGGTGGAAGATGTGAAGTCCATGCGACGGTCTAATCACGTTGTTACGAAGTGTAGGTCGTTCAAGCCAAAGATGCGACAAGTTAAGCAACTGCGAGACCTAAAGGCAATGAAGGCCGTAGTGGGCCGTTCACCAGTCGGTCCGCGGGCCAGCAAGAACAAGCCACCAAGTGTCAGCTGTCAGTTCAATTATTCGCTACAGAAGATGCTAATGACATTGAATGAGGCGAACCCATTCTTCATCCGGTGCATCAAATCTAACAAGGACAAGGCTCCGTGCACATTCGACCGTGACATCGTACTGCGCCAGCTGCGCTACACAGGCATGCTGGCGACGGTGAAGATCCGTCAGTCAGGCTACAACTACCGCCTCACGTTTGACGAGTTCATCCAGCACTACAAGATACTGCTGCCAGGGGGCCTGCTCAGCTCCCGGGACGACATCGGGTACTTCCTGCAGAGCCTCGATCTCAACCAAGAAAATTTCCAGATCGGCAAGACCAAGGTGTTCCTGCGTGAGGCGGAGAAGATGTTGCTGGATGACGCGCTGCACCGTGCCATCATGAAGCGCATCATCTGTATCCAGCAGTGGATGCGAGCGAGGCTGGAACGCAAACACTTCCTCAAAATGCGCTCCTCGGCCATCCTCATACAGCGAAACACCAGAGGGTTCCTGGCCCAGCGCAAGTTACATCATTTAAGACTCTGCTTCTATGCTGCCATTGCCATTCAGCGAATGTTCCGAGGGTTTATCGTCAGAAAGAGGCTGCAGAAGCAGAGCGAGGCTGCAACTGTGATACAAAAGACATACAAGGGATATTTGGCTCGTGAACAGTACAGAGTGTTGCTGGAGCAGCGAGAGAGGGAGTTGCGGAGGGAGGAGCGACTGCGGGAGAGAGAGCAGGAAAAGAGGGAGGCAGAGGAAAGGGAGAGGGTAGCAAGGGAGGAGAGGGAACGTGCGGAGAAGGAAGAACGAAAGAAGCACCACGTGGAGGCTGAGTGTGCAAGCCATGACACGGCCGTAACGAAGGTGTCTAGTCGAGAAGACGTTGCCTGTGATGAAGGCGTCTACAGCCGTGACTCAGAAGGGAGCAGTGGAATTCTAGATGATTCTGAGTCAGAGGTTACCTCACAAGGGGGCGCCACTAGTTCTGTGTCAACGCCGACAACATCACCACGACCCACAAAAGCTGTTCATCGGAAGAAGCGAGTGTCACCAATGCAGACAGGACGGACAAGGACACCGCAAATGTCACCACCACAGAATCGTCTCTCCTACACCGGCAGTGCGTCACACCTGAGGACCCAGGAAGGACCAAAAGACCTAGAGGTGTGTGTGTCACCAGTGGTCCTAAAGAAAGCTGCTTCGCTGGAGTTGCTCCAGACCTATCAGCCGCCGTGTGCAACTGTCGCAACAAAGAAACGCATCTCAGCGCCGCTCGCCAAACAAGAGTCAATCACAGACAGCGAGGACAACAACGACAAGGGTGTGGTACACCAGATCACCATGGAGCCCGAGTCACTTGACCTGAAGGTTCGACAGCGGGACAAGGGAGTACCAGAGGAGGACAGTGCAGCACCCCACTCAACCTTCAGGAGTCCGCTACATCGCGTCAAGAAGCACGTCTTCAAGAACCTTATCAGCGGAGACGACATCGAAAACATTGAGCCAGAAGAACTCCCAGTATGCACCTCTTCCTCCCCCGCTGCCCAGTGGGAGCGCTGCTCCTACTCCGATATTCTGTATGTGCCTGAGCCAGTCGCCATCGAGATGATTAGTGATGAGGAGAATGACGCCCCAGTAGCGTACATTCCAAAGGGCGTCGAACTGCGCATGCATGCGCCACGTAAGCACGACGAAGTGCGTTCGCTCATGAAGCGGACATCGCACAACTTCAGTCGCTACACAAAGAAGTCACTGCGGGAGTTGCTACGACAACAGCGTGAGTAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF05383	La	La domain	Domain	Interproscan
PF08777	RRM_3	RNA binding motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002344	Family	Lupus La protein	Interproscan
IPR006630	Domain	La-type HTH domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR014886	Domain	La protein, xRRM domain	Interproscan
IPR034887	Domain	LARP7, RNA recognition motif 1	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR045180	Family	La domain containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG25064.1 global RNA-seq network