Gene detail

Detailed information of RPACG25002.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG25002.1	FOLLICULIN FAMILY MEMBER	tig00116480	519374	536573	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG25002.1

ATGAGTAAATGTGATGGTTTCGAAGGGTCACGTAAACGTGATGTGATTTCTGCAGTTGCTCTGGACCTTGTAATCACCAGTTCAGAAAACAGCATAATTTACCAAAAAGAAGTCAACATGGGAAAGAGTAAACAGAATTCTACGTTTGAACCATGCCAAATTGGAGATTTAATAGATCAAACAGTCATTACAGCAAAAGTGAACCCACAGAAAACCATCATTGTTGACAGCGTTGAAAGTAATGATGTAAAGGGGAACAGATCTATGACTGATAGCGATTTAGGGGGAGCCACCAGTCATGGACACACACCAAAAGACAGAAACAACTGCAGTGATACATCATCTTTCCAAACAGTGCCCGCTGTTAACCAGTTGAAGAACGACCATGGGTGTGACATCCAGAGGTCAGCACTGCATAAACAAGCCTTGGAGAATCTGGAGGATGCATCATGTAAGGATTCTCACTCATGTAGTCATCTTGAACAAATGCCCTTAAAGCATTCAGTCGTAGATGAAATCACCCTTCGCACATCGCCTCCTATGAGAGTATGTCTTGTTAAGCGAATCACTGAGCAACATGTCACTACTGATGCTGGTGACACACATATGTCGTCACCATCAATGACGTGCACTGCTTCGGAAAACGAACATTCAGGTAAACCATTGGATGTGGAACGTGGTGCGATGGAAAGAAGGATGGACGAATCGAAGGAACGTCCGGATGACGGGGGTGAGAACAGAAGTGAATGTTCAGGAGGAGGAGGAGGAGGAGGGATAACGCTAACATCACAGCATGATCCTGCTGTCAGTGTCAGTGATGCTTTGTCAACGTGTGACACCATTCATAGGCTTTCAAGTCATCAGGTGACTGACACTCAGAGTGGCGACGCTTCTGAGGTACCACACACAAGCAGCAGCACGAAGTTGGTGACATCCGCAGAAAGCAGCATTGATGTCACTAAGTCACCAGAGATTCAGGAAGCATCTGTGTCATGTGTTGGTGACACTCTCAGTACAATGTCTGATACAGTTGGTGTGTCACCTACTAATGACAGTTTGTCAGACAGTGATTGTGTCACTGACACAGTGAGCAGTGATGTTGACATATTACCAAATTGTGATGGTGACAATAGCAACACTAAAAATGTCAACACTAGATGTGTCAATGTTGAAAATGTCAACGGTTGTAGATTAAACACTGACAGTGTCAACCCAGTGGATAAACGTTGTAGTCATCTGTCACAGTATGTTTCTGTGTTGACACAAAGTGACAGTGACGATGCAGTGTTGTCCAGCACGACGAAGAGTGTTGCTCCGTTGCATACTAGTGACACAGCTGATGTAACTGTGACACACGTCATTGCTCCAGTTTGTGACACAATCGTAAGCGTGCGTGCTGTTACTATGACAACCGCTGATGACATTGCAGAGGTTGACGCAGCAAGTATGTGCATGAGTTCAACTGTGGCAAATAGTACAACTCCCCCAGTGAATGCTGTCACCAGTGATAATGTCACCAGTTCTCTGGTGCGACCTACAACGCATGATCAAAGTGACGTCAGCGACTGTGCAACATCCAGTCATCACGGGCCCGATTTGATAATTTCCAGTTCCAAAATTACCAAGAGGAAGTGTGTTGGCTCTGAGCCTGTTGTCATAAAGAGAGAGAAATTGGACACTGGTTATGATAAAGCAACCGCTGGAAGTCAAGGCCGGGTCAGCAGTAAGGCGACTGCCAGGAGCCAGCGCCAGGGCGGCAGGCGTCAAGGACAGGTCAGCAGGAGTCAAGGACAGGTCAGCAGGGGTCAAGGACAGGTCAGCCGGGGTCATGTTCAGGTGATGAGCCAGCCAGTGACAACGTTGAACCCGGCGAGTGCCCCACATTTGGCACGTCACTTGATGCAAGGTATTGTGGGCAAGGAATCGCTGTCGAAGCTGGGACGACCACCAGTCAAGACAGTCACACTGCGGATGCTGCCATCTGCTGGCCATGTCACAGCGACCAGCGACGCGGCCCAAGTGGGATATCCGGTGTGGAAGCGCACGCAAGCTGTCGCTGCATCGAAATCAGACACGTTTGTGATCATGACGCAATCTGTGGGCAGTAGTCAGACCCCTGTACCATTTACTGCGGTAGCGCGCCCCTATGTGCTGGTGACTACCTCTGCCACTAGCGTTGTTCGGCCGCAGTTCATACAGTCACAGCCAAAAATTCAAACCGTCACCATCGTGCCTGCTACATCAGCACCCCCTAGAGGCAGGCTGAAGCAGTTGTCAGTACCGAGCGTGCCGTACGGACGGAGCAAGGCATTGTCACGTCCCAACTCTGTGCCGACCTACAAATGCCCAATGCCTCCGCTGGAACTGTTCAACGAGGAGCCGCCCAAGACGTTCATATGTGGTGAGTGTCATGACACGTTCTACCACGAGCGCAGTCTACAGCAGCACCTGAACCGCAAGAGCGTGTCGATTCGCATCCACTGCATCGCGTGCAAGACACAGCTTCTCTTCTACAACCACTGCGCATTCCTCATGCACGTGCGTTCGCATCGCCGTGGCTCATTAGACACCTTTGGCCTGCATCGGGCGAAGATCACGCCGCTTCCACAGCACTTCATGCCAGCCGTCTATTGGTCTGTCAGTAACAGTGACCCGGGGTCAGCGCCGGTGTCTAGAGCTGCTCAGACCACTGATAGTTCACCCGTCGTGTCTTCTGCCAGCGCAACACCGCAGCCAGAACGTAGCACCACACCCAGAACAAAGCACGACGCAGTGGAGAAATCACCCGATTCCAAGACTCCATTCATGTGCATCGAATGTCACAGCACATATACGTCGCAGGGCCAGCTGCAGCACCACCTGGCAGTGAAAGTCGGCCAGAAGTTGTACCACTGCAATCGGTGTCCGATGGTAATGCGGAACCCATGTCGCTACAACGCACACGTGCGCGTCCACCGGAAGCAGCGGCCGTACGTATGTCCAGAGTGCGGCGAACTGATCCGTGGCAGCCACGCCGTCTTCCTCAAGCACGTCAAGTGGCGATGCCTGCATTTCACGCGAACTGTCCGTTTCACTTGCACGCACAACTGCAACGCACATTTCGAGTCCGAGTTGCGTTACATCAACCACGTCGTCGCGAAGCACGTGTCCAACTACTACAAGTGTTTGTCGTGTCCGATGGCTTTCTGCACGGATGATGCGTTCGACAAGCATAACGTGGCTGTGCACGCTTCCACGGCCGTCATGCAGCACATCATCAAGTGTAGCTATTGTGACACGGTGTACCAGCGTCACACCGAGCTGACAACACACATGACAAAGAGCCATCAGACGGAACTGTGGGGCTTGATGCACTACGTCTTCAAGTGCCCACATTGCAAGCACGTTCGCGCCACGAAGTACGACCTGATCAAGCACATGGAGACGGCACATGAATTCACATACATGCTGAGCATGTGCAACGTGTGTGGACAGGAAATGGCAGGGAGATTGCTGGCAACACACAAGTCAGAGTGTCACCCTTTCGATGACACCAAGAAAGAACAGTTTCAATGGCAGTGTAACAAATGCAGCGAGAGTTTCCCCTCATCGGCGAGACTGCACAAACACAGACGCGTTCACAACGGTAACGCACATAACACGTTGTTCACACACAAGTCTCCTGACGGAGATAAGAGTTCCGACGAAGTGAACAGTGAAACGAATAGCAAGTTTGCAGAGCCAACACCAGAATTCTGTTGTTCGCTGTGCAGCGAAAACTTCAGCAAACAGACAGAACTGACAAGCCACTTGCGGGCTAAACATGACATCATACCGCAGTTCCCATGTCATTTGTGTGGATTGACATATGAGAATGAGGCCGACACGAAGCGGCACATTGCAGATGTTCACGAAGGGAAGAAAGCAGTGGCACCACCTACGTTCACATGCTGGTTGTGCAGCGACGATGATGACGCAAGTCGGCACTTCAAGAAACGACGTGGGCTCATCAATCATCTATCCACCGTTCATCGCATTCCGAAGAATAATCTTGACATAGCGCGACTATCGTCATCGCTGTCAGACTCTAGTGGCGCCGAGGGCAGCACTGAAGCCATTCCTCCGCCAGCTCCTGCACTGAAGCGGCTGAAAACTGACAGTGACTCGAAGTTCGTGTGTGCAAAATGTGACTTCAGCGGCGTCGATCGTGCGACATTCGTCAAGCACATCGTGAAACATCGCGCGCTTGACAATCCATGGCAATGCCATGAGTGCGCACTCTGTTTCACTTCACGGCCGTCTCTGCGGCGCCATCTGTTCATGGTGCACCGTGTGCGTGACTTCAAGCGTTACAGCAGGGAAGCTGGTATTGACCTTGATGTTCCAGTCGTAGACATAAAAGAGGAGGAGGATGACGAGTTGATGTGTGGGACGTTTGTGCGACCAACACTGCCTCCCCCCATGCAAACAGTGGTTGCCCCCGCTGGAGTTGATAACCCGCTCGAGTGCACCGTTTGCTATAAGCAGTTCGATGAGGAGAGTGCAAAGCGTGCACATATGCGCACGCATGGCATGGCATTCATATACTCCCGTCGACGTGCAACCAAGCTAGTCCAGTGA

Transcript

RPACG25002.1

ATGCCGAGGAAGCCATTTTATATAGAATTGTGGGTAGGCCAATATCACGTGACATCTCTGCTCTTTACGCCTAAATACCAAACATGTGCAAAACTTGAAAAGCCTGACCCAAAATTGCTCATCTGCGTCGACGTCTTCGAGAGACAAAAAATGGGATGTGCAGTTGCCGAGACAGCCGTCATTGGTGCAATGGCAAGGAAGTCAAAGGTCATCTCCTATCAAGGTCAAAGACCTTCCAACTTGGCGTCAGAACTGGACATAATTATCCAGACTGGTGTTTACGCAGCGTCATCATGAGGACTGGTAGTGACACCTGGTGTGGAAATGAGTAAATGTGATGGTTTCGAAGGGTCACGTAAACGTGATGTGATTTCTGCAGTTGCTCTGGACCTTGTAATCACCAGTTCAGAAAACAGCATAATTTACCAAAAAGAAGTCAACATGGGAAAGAGTAAACAGAATTCTACGTTTGAACCATGCCAAATTGGAGATTTAATAGATCAAACAGTCATTACAGCAAAAGTGAACCCACAGAAAACCATCATTGTTGACAGCGTTGAAAGTAATGATGTAAAGGGGAACAGATCTATGACTGATAGCGATTTAGGGGGAGCCACCAGTCATGGACACACACCAAAAGACAGAAACAACTGCAGTGATACATCATCTTTCCAAACAGTGCCCGCTGTTAACCAGTTGAAGAACGACCATGGGTGTGACATCCAGAGGTCAGCACTGCATAAACAAGCCTTGGAGAATCTGGAGGATGCATCATGTAAGGATTCTCACTCATGTAGTCATCTTGAACAAATGCCCTTAAAGCATTCAGTCGTAGATGAAATCACCCTTCGCACATCGCCTCCTATGAGAGTATGTCTTGTTAAGCGAATCACTGAGCAACATGTCACTACTGATGCTGGTGACACACATATGTCGTCACCATCAATGACGTGCACTGCTTCGGAAAACGAACATTCAGGTAAACCATTGGATGTGGAACGTGGTGCGATGGAAAGAAGGATGGACGAATCGAAGGAACGTCCGGATGACGGGGGTGAGAACAGAAGTGAATGTTCAGGAGGAGGAGGAGGAGGAGGGATAACGCTAACATCACAGCATGATCCTGCTGTCAGTGTCAGTGATGCTTTGTCAACGTGTGACACCATTCATAGGCTTTCAAGTCATCAGGTGACTGACACTCAGAGTGGCGACGCTTCTGAGGTACCACACACAAGCAGCAGCACGAAGTTGGTGACATCCGCAGAAAGCAGCATTGATGTCACTAAGTCACCAGAGATTCAGGAAGCATCTGTGTCATGTGTTGGTGACACTCTCAGTACAATGTCTGATACAGTTGGTGTGTCACCTACTAATGACAGTTTGTCAGACAGTGATTGTGTCACTGACACAGTGAGCAGTGATGTTGACATATTACCAAATTGTGATGGTGACAATAGCAACACTAAAAATGTCAACACTAGATGTGTCAATGTTGAAAATGTCAACGGTTGTAGATTAAACACTGACAGTGTCAACCCAGTGGATAAACGTTGTAGTCATCTGTCACAGTATGTTTCTGTGTTGACACAAAGTGACAGTGACGATGCAGTGTTGTCCAGCACGACGAAGAGTGTTGCTCCGTTGCATACTAGTGACACAGCTGATGTAACTGTGACACACGTCATTGCTCCAGTTTGTGACACAATCGTAAGCGTGCGTGCTGTTACTATGACAACCGCTGATGACATTGCAGAGGTTGACGCAGCAAGTATGTGCATGAGTTCAACTGTGGCAAATAGTACAACTCCCCCAGTGAATGCTGTCACCAGTGATAATGTCACCAGTTCTCTGGTGCGACCTACAACGCATGATCAAAGTGACGTCAGCGACTGTGCAACATCCAGTCATCACGGGCCCGATTTGATAATTTCCAGTTCCAAAATTACCAAGAGGAAGTGTGTTGGCTCTGAGCCTGTTGTCATAAAGAGAGAGAAATTGGACACTGGTTATGATAAAGCAACCGCTGGAAGTCAAGGCCGGGTCAGCAGTAAGGCGACTGCCAGGAGCCAGCGCCAGGGCGGCAGGCGTCAAGGACAGGTCAGCAGGAGTCAAGGACAGGTCAGCAGGGGTCAAGGACAGGTCAGCCGGGGTCATGTTCAGGTGATGAGCCAGCCAGTGACAACGTTGAACCCGGCGAGTGCCCCACATTTGGCACGTCACTTGATGCAAGGTATTGTGGGCAAGGAATCGCTGTCGAAGCTGGGACGACCACCAGTCAAGACAGTCACACTGCGGATGCTGCCATCTGCTGGCCATGTCACAGCGACCAGCGACGCGGCCCAAGTGGGATATCCGGTGTGGAAGCGCACGCAAGCTGTCGCTGCATCGAAATCAGACACGTTTGTGATCATGACGCAATCTGTGGGCAGTAGTCAGACCCCTGTACCATTTACTGCGGTAGCGCGCCCCTATGTGCTGGTGACTACCTCTGCCACTAGCGTTGTTCGGCCGCAGTTCATACAGTCACAGCCAAAAATTCAAACCGTCACCATCGTGCCTGCTACATCAGCACCCCCTAGAGGCAGGCTGAAGCAGTTGTCAGTACCGAGCGTGCCGTACGGACGGAGCAAGGCATTGTCACGTCCCAACTCTGTGCCGACCTACAAATGCCCAATGCCTCCGCTGGAACTGTTCAACGAGGAGCCGCCCAAGACGTTCATATGTGGTGAGTGTCATGACACGTTCTACCACGAGCGCAGTCTACAGCAGCACCTGAACCGCAAGAGCGTGTCGATTCGCATCCACTGCATCGCGTGCAAGACACAGCTTCTCTTCTACAACCACTGCGCATTCCTCATGCACGTGCGTTCGCATCGCCGTGGCTCATTAGACACCTTTGGCCTGCATCGGGCGAAGATCACGCCGCTTCCACAGCACTTCATGCCAGCCGTCTATTGGTCTGTCAGTAACAGTGACCCGGGGTCAGCGCCGGTGTCTAGAGCTGCTCAGACCACTGATAGTTCACCCGTCGTGTCTTCTGCCAGCGCAACACCGCAGCCAGAACGTAGCACCACACCCAGAACAAAGCACGACGCAGTGGAGAAATCACCCGATTCCAAGACTCCATTCATGTGCATCGAATGTCACAGCACATATACGTCGCAGGGCCAGCTGCAGCACCACCTGGCAGTGAAAGTCGGCCAGAAGTTGTACCACTGCAATCGGTGTCCGATGGTAATGCGGAACCCATGTCGCTACAACGCACACGTGCGCGTCCACCGGAAGCAGCGGCCGTACGTATGTCCAGAGTGCGGCGAACTGATCCGTGGCAGCCACGCCGTCTTCCTCAAGCACGTCAAGTGGCGATGCCTGCATTTCACGCGAACTGTCCGTTTCACTTGCACGCACAACTGCAACGCACATTTCGAGTCCGAGTTGCGTTACATCAACCACGTCGTCGCGAAGCACGTGTCCAACTACTACAAGTGTTTGTCGTGTCCGATGGCTTTCTGCACGGATGATGCGTTCGACAAGCATAACGTGGCTGTGCACGCTTCCACGGCCGTCATGCAGCACATCATCAAGTGTAGCTATTGTGACACGGTGTACCAGCGTCACACCGAGCTGACAACACACATGACAAAGAGCCATCAGACGGAACTGTGGGGCTTGATGCACTACGTCTTCAAGTGCCCACATTGCAAGCACGTTCGCGCCACGAAGTACGACCTGATCAAGCACATGGAGACGGCACATGAATTCACATACATGCTGAGCATGTGCAACGTGTGTGGACAGGAAATGGCAGGGAGATTGCTGGCAACACACAAGTCAGAGTGTCACCCTTTCGATGACACCAAGAAAGAACAGTTTCAATGGCAGTGTAACAAATGCAGCGAGAGTTTCCCCTCATCGGCGAGACTGCACAAACACAGACGCGTTCACAACGGTAACGCACATAACACGTTGTTCACACACAAGTCTCCTGACGGAGATAAGAGTTCCGACGAAGTGAACAGTGAAACGAATAGCAAGTTTGCAGAGCCAACACCAGAATTCTGTTGTTCGCTGTGCAGCGAAAACTTCAGCAAACAGACAGAACTGACAAGCCACTTGCGGGCTAAACATGACATCATACCGCAGTTCCCATGTCATTTGTGTGGATTGACATATGAGAATGAGGCCGACACGAAGCGGCACATTGCAGATGTTCACGAAGGGAAGAAAGCAGTGGCACCACCTACGTTCACATGCTGGTTGTGCAGCGACGATGATGACGCAAGTCGGCACTTCAAGAAACGACGTGGGCTCATCAATCATCTATCCACCGTTCATCGCATTCCGAAGAATAATCTTGACATAGCGCGACTATCGTCATCGCTGTCAGACTCTAGTGGCGCCGAGGGCAGCACTGAAGCCATTCCTCCGCCAGCTCCTGCACTGAAGCGGCTGAAAACTGACAGTGACTCGAAGTTCGTGTGTGCAAAATGTGACTTCAGCGGCGTCGATCGTGCGACATTCGTCAAGCACATCGTGAAACATCGCGCGCTTGACAATCCATGGCAATGCCATGAGTGCGCACTCTGTTTCACTTCACGGCCGTCTCTGCGGCGCCATCTGTTCATGGTGCACCGTGTGCGTGACTTCAAGCGTTACAGCAGGGAAGCTGGTATTGACCTTGATGTTCCAGTCGTAGACATAAAAGAGGAGGAGGATGACGAGTTGATGTGTGGGACGTTTGTGCGACCAACACTGCCTCCCCCCATGCAAACAGTGGTTGCCCCCGCTGGAGTTGATAACCCGCTCGAGTGCACCGTTTGCTATAAGCAGTTCGATGAGGAGAGTGCAAAGCGTGCACATATGCGCACGCATGGCATGGCATTCATATACTCCCGTCGACGTGCAACCAAGCTAGTCCAGTGATGCTGCGGACAGCCAGTGTACTTCTACGAAAGTGTGGCATCACTTTGATAAGTTTTATTTGTTATCACAGTAGTGTTAAGGACACATTCAGTGTATAGACTAGGGTGGTGACATGGGTTCGCGAAGTAAATGCTGGAGTGTGTGTGTCCAACATCAACAATCTGGAAACTTTCGTTTAGCCCAATTCTACAGTTCATGTGTCATTAGATTACATGTTTGGCAGGCAAAACGCTCAACTAATGAAGTGTTTCAGGCTGATTAAATGCCATCGGAACATTTATTCTGCTATTAAGACAAACCATTATTAATTAATTTGAACAGAGTCAGATTTAATGCGAGGCTTTTGTTTTTTGTAGACATTCCTTACGTAGGCAGTGTTTGTAGTATAGCAAGAGGTTGTTGCCTGTAACAAGAGCTTATCGCTCCGTGACGCAAGAGGTCACCGACTGCTTGTAGTGAGAGGTAGATGTTCAAGTCTTGGCATGTCTGACAAAATGACATTTTTGTACGGTCAAACACCCACCTTAAATCTCAGTCAACTGACTTTGATAAATGTTAGGCATAAGCAACCATTTTTGGATGGTGAATATTGCAAGGTCACAGCCCAGAATGGATAACTGTTTCTGGACTAAGAACATCCGCGAGTTGATAAAAAGAAGGTGGCAGGAAATGGTTCAGCGATCACAACTTTGTCAAGTCAAAGTGTGACCACGTGCGCTTCTCATACACGTTGTTTTGTATTTTCGCGTGTACAATCATGATTTTGATTAGCCCCGCCAGAATAATACTTCTAATTCGTGTTATCCTACTGACCCGTAATATAATGACACGTCGAGTACGATGTGACAAGATGTTCCGTTTCATCGCACACAGATGGTTTTATTGGTGTCCAGTTGTAGTTGCATGTGCACATGTCATGTGATGCAGTAATGTTTTTTCAGTGCAATTATATTTTATTTTGATAATGGAAGTAACAAAAATGTTTTTGCACAGTATGTGCCGTGATACTGGAATTGAACACAAGATGTAAGGGTGGTCTGGGTTTCTGGTACAAATGATGTCAATTGTAAATTGTTGTGAGTTTTACCGTTTTATATAAAAATCGTGCTGGATCCAAGTGCACTTCGAAGTGCGCTTCTAGTGTTGCTTATTGTGATTATTTCAAACTCCTTGTTATTATCATTGAAATACCTACAAGAGTATGCCAGTTTGATAAGAAAGAAGAAATCAGGAAAATAAAACTCAGTTATGCACAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11704	Folliculin	Vesicle coat protein involved in Golgi to plasma membrane transport	Family	Interproscan
PF16692	Folliculin_C	Folliculin C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021713	Family	Folliculin	Interproscan
IPR032035	Domain	Folliculin, DENN domain	Interproscan
IPR037520	Domain	Folliculin/SMCR8, longin domain	Interproscan
IPR037521	Domain	Folliculin/SMCR8, tripartite DENN domain	Interproscan
IPR044886	Homologous_superfamily	Folliculin, DENN domain, C-terminal superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31441	FOLLICULIN FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0030511	Biological Process	positive regulation of transforming growth factor beta receptor signaling pathway	Interproscan
GO:1904263	Biological Process	positive regulation of TORC1 signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG25002.1 global RNA-seq network