Gene detail

Detailed information of RPACG24898.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24898.1	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	tig00116312	1930850	1958334	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24898.1

ATGACGTTTGATAACCTGTTACCTGGTCAAATGTACACTGTTATTGTGGTTACAATGATTGACAGTTTGGCTGGGGAATCAGTGGAAAAAGACTTTTACACGGATAATCATTGGTGTGTTTCAAATCCATGTCAGAATTATGGAACGTGCATCGCTGGTGTTACTGGTTATACCTGTGTCTGCACTGTTGATATATACACCGGTGTTAACTGCGAAATAGTGATCCGGAGACGGTTGTATCAGTATGGTACTGGACATGGCGACATTAATCTCGCGACACAAAACGATAAGACATGTGACTACGAAAACAAGTATTGCACTAGTGGCGTGGTCAAAACACCTTTGATACAGATGTTTAATTCCCAGTTGAAAGACATCGTGGTGACAACAAATGGCTACATTACCTTGGGTTCATCATATCATAGCAGAACACCAAATATGTTCAAGAATATGTTCAATGTTGCAAAAGCAGCAAAAAATGAACAATACGGATTCGCGATGTTTGCCCCTATGTGGACCGATATTGACGCGCAAGAAGGGAGAGTGTTTTACCATATCTATAACCGAGACGACACTGGTTTGTCTGATGACGACAAGGCAACGATGACGCATGCGATGACACTTGCCACTGAAGACGTGAGAAAAGTTGGTGGTCCCTCAAGTGTTCGACCTACCTGTGTGATTGTAATCACATGGGAAAATGTGCTTCCGAGAATGTCGTATGATCAAAAAACGGATCAGCCAAGCACATTCCAACTGGTCATTATCTACGACGCATCAACTTGGTCAACGTATTTGATGTTTGGCTATGACAAGTCAGGGTGGAACAAGAAATTGACAAGCCGGCACAGCACGATTGGATATTACGTTGCCCAATATGGCCAAGCAAACACGAATCTGCTGTGGGTGTCTGGAAAAGAAGCGTCATTCAATCTGGCGAACTTGCAGGGTAATAGAGGTGAAACTGGACGTTATCTTTATCAAGTGGCTTTTGGTAAGAACACTACGAACTACGATCAGAAATGTTCCGACTGGTACAACAGTCAGGACTTTACTACAATATCCTCGCAACTGGCATCCATCAAACCATGTCCGTGCGACCAGCGACAGGCTAAGGGTGACAACCGCTGGATAAAAGACATAAATCTACCAGGCACTGAATTTAACATAGAATGTTACATCCAGAGACATGTGCAGCATACAACTGCAACTCAGTACTGTTGTTACGACATCAGACGGGGATCACTTGTCGGTGACAGAAGCCACATGTTCACCACGAGTCCACGGGTTAACAGGGTGATGCACCAGATAAATGACATTGATCCCAAGAAGTGGTGCTGCGCATCCAGTGACAACTGTCATTTGTACACTAATGCCCGGCCGGTCAACCACTGCCAACATTATTCTTCTCCGAGAATGGGTTGGTTCTTTGGTGATCCTCATATTCGCACGCTGGATGGTTTGACATACACAATTAATGGACTTGGGGAGTACGTTCTCATTGTCACGAACGAAGGCAACTTCACCTTACAAGGTCGAACATCGAAGGCCCTCGACACCAATGGAAACCCAATTCTGGGGACAATATTTTCAGCTTTTGCAGCAAGCGATGCTGATTCCGATAGAGTTCACGTACAAATGAACGACCGCAGAAACGGAATAATCGTATATGCTGCTGAAGAAGACATCACAGGCTGGGTGCATACCGCTGACACTGGTGACGAAAAGTCGTTTGTTGGTCTTGACATAACGCGAGCATCAGCCTTAGCAGTGAATATTTCCTTTGCATCGGGCTTCTCCCTGGATATTAATTTGGCAGCGGGCCAACTGGACGTAACTATTAGTGCTCCGCCTGAATTCATAAACGAGACCCAAGGATTAATAGGCGTGTTCAACGATGACCCCAGCGATGACTTGCTGCCTTCAAATGACACCGTTGCGTTGAATCCAACAGAAACAGAGAGGACTATATTCTACAAGTTTGGAGAGACATGGCGTATCCAGAAGATCGACTCATTATTTAAATATCTGAATGGTACATCGTTCGAAACGTTCGACATTGTCGATTTCACACCAGTGTTCCAAGATGATGTTATGGGAAAGATGACAGATGCTGAGAGAGAATTAGCCGAAGCCATATGTGACGGGAACAATGTGGAATGCATGTTCGATTTAGTTATGACTGGCCAAGCGGAAGTTGCTCAATCAACTTTAAAATTCAACACGAAAAACAACGAGAATGCCAAAAACCTAGCAAACAATAGTCCAAAAATCAATGTGGTCACCATGCTGAACGCAACTGTTGGGGAAGAAGCCGTTTTAAACGTGACGTCGACGGACACTGATGGTGACGTGGTCAGTGTGACTATGTTGTTTGACCTTCCTACCGGAGCAACGTTCGATCCAGCGAGTGGCCATTTTATATGGAGACCTGCAAACGTAGAAACCGTCAACATCTCATTCAGCGCCAGTGATGGCAAAGGTGGAGTCTCTCCAACGGTCGTCGTCACGATCAATATGTGCGATTGTTCTGGCCACGGCGCATGCGTCTTTGAAGAACTGGCTAAAGGACAAAAGCGATCGGACACGTACAGAATGGTTGCATGCGATTGCAACGTTGGATATGGAGGCGATCGCTGCGAAGAAGACGTGGACGGTTGTGCCGACCACCCTTGCATAGTCGGCACCAACTGTACCGACCTAACACCCGAGGAGCAAGTTGCCCAGAAAAAGGCCTTCGTTTGCAGCGAATGTCCAAACGGCTATACTAAAGATGCTGGAATCTGCGTCGATATTGACGAGTGCAGATTGGACTATAACTGCAGTGAAGGCGAACGATGTGCGAACACACCGGGAAGCTACAAATGTGTATGCCAACAAGGTTACAGACTAGATGCAAGTAGCAAGACATGCACTGATATTGACGAATGTGACGAGAAGACATCTGATTGCCAGCATATATGCACAAACAATGCAGGAGGCTTTAGCTGCTCTTGTTTTGAAGGATATACAATGAACACAACTGGCGGTTTCTGTCTACAAGATGCGGATATTGAAGAAAAATGCCGACTTGCACACCTCGAAGATTGTCAGCATGGTTGCCGTAACAATGACGAATCGCGCACCAAGGTGGAATGTTTTTGCCGGAGTGGATACTCAGTTGACGCAACAAACCAAAAGAAATGTAAAGACATTGACGAATGTGCTGAAGGCATCCACTTATGCGAGCATGGATGTATTAACACAGAGGGTGGCTACAAATGTTCATGCAGACCCGGATATGTGCTCGGTGATGACCATCGTTCATGCCAAGCGTGCCTGTATGGCCTATACGGCGTAGACTGTAAAACCATGTGCAACTGTGTTACGTTAAGTACAACATGCAACCCCGTCTCGGGTTGCGAGTGTCCGCCTGGATACTCTGGAGAACAGTGCAGCAACATCAACGAGTGTTTGAACGACACAACGTGTGGCGCTCATACCACGTGTACTGATGTGCCCGGCTCATTCAGGTGTGACTGTCTCGATGGGTACATCCATGTCGACGAAACTGCATGTGAGGCCGCACCATCAAGCAAACAAGTAATTCAGTGGCTGCTGCTGATCCTTGGGACATTGTGCAGCCTCATTCTGCTAATCCTGGTCGTCATTCTCTGCATCGTCTGCATCTGTGGGCGTAGACGTAGACATGTTCGTAGCAGCAATACCGACTACTTGACCAATGACTCTAATCTGTACTGCAGCCCAGCCTCATCGATGCGCCAGATGTTCTGGCAGAAGCGCACTCCTACAATGACGGACACGAACAACGGCGGATTCGACATGTTCGACGAGAATCGATTGAACATAATCAGTCGAGCGATGGCTAAAGCAAATTTCATCGACTGGAGTATAATGCGTAACTTTGCCAGACGCAATGGTGTCGAACAGGCAGGCGAGTTCCATTGA

Transcript

RPACG24898.1

AACCAAGTGCTGTGACAGACCTTGCTGCGAATGTCTCGTCAGAACAACTGGTTGTTTCATGGAGAGCACCCAGCGATGAGGAAATAACAGGATACACGATTGAATTGAAAGAAGTGACAGGCTCGCAGAAACTAGTCACTGCAACAACAACGACGTTTGACACACTTAATCCAGGCAAAAAGTACACTGTTGTAGTGAGAGCAATGATTAATACATTGGCTTCAGAAGCAGTGGAAACAATTTTCTACACCAGACCGAGTGCGGTGGCAGGCCTTTCAGCGCGTGTCTCGACAGAACAAATTGTTGTTTCGTGGATTGCACCTAGCGGGGAGGAGATAACTGGATACACTGTGGAATTGAAAGATGTAGCACGCTCGAAGATACTAGTCACAGCAACAACAATGACGTTTGATAACCTGTTACCTGGTCAAATGTACACTGTTATTGTGGTTACAATGATTGACAGTTTGGCTGGGGAATCAGTGGAAAAAGACTTTTACACGGATAATCATTGGTGTGTTTCAAATCCATGTCAGAATTATGGAACGTGCATCGCTGGTGTTACTGGTTATACCTGTGTCTGCACTGTTGATATATACACCGGTGTTAACTGCGAAATAGTGATCCGGAGACGGTTGTATCAGTATGGTACTGGACATGGCGACATTAATCTCGCGACACAAAACGATAAGACATGTGACTACGAAAACAAGTATTGCACTAGTGGCGTGGTCAAAACACCTTTGATACAGATGTTTAATTCCCAGTTGAAAGACATCGTGGTGACAACAAATGGCTACATTACCTTGGGTTCATCATATCATAGCAGAACACCAAATATGTTCAAGAATATGTTCAATGTTGCAAAAGCAGCAAAAAATGAACAATACGGATTCGCGATGTTTGCCCCTATGTGGACCGATATTGACGCGCAAGAAGGGAGAGTGTTTTACCATATCTATAACCGAGACGACACTGGTTTGTCTGATGACGACAAGGCAACGATGACGCATGCGATGACACTTGCCACTGAAGACGTGAGAAAAGTTGGTGGTCCCTCAAGTGTTCGACCTACCTGTGTGATTGTAATCACATGGGAAAATGTGCTTCCGAGAATGTCGTATGATCAAAAAACGGATCAGCCAAGCACATTCCAACTGGTCATTATCTACGACGCATCAACTTGGTCAACGTATTTGATGTTTGGCTATGACAAGTCAGGGTGGAACAAGAAATTGACAAGCCGGCACAGCACGATTGGATATTACGTTGCCCAATATGGCCAAGCAAACACGAATCTGCTGTGGGTGTCTGGAAAAGAAGCGTCATTCAATCTGGCGAACTTGCAGGGTAATAGAGGTGAAACTGGACGTTATCTTTATCAAGTGGCTTTTGGTAAGAACACTACGAACTACGATCAGAAATGTTCCGACTGGTACAACAGTCAGGACTTTACTACAATATCCTCGCAACTGGCATCCATCAAACCATGTCCGTGCGACCAGCGACAGGCTAAGGGTGACAACCGCTGGATAAAAGACATAAATCTACCAGGCACTGAATTTAACATAGAATGTTACATCCAGAGACATGTGCAGCATACAACTGCAACTCAGTACTGTTGTTACGACATCAGACGGGGATCACTTGTCGGTGACAGAAGCCACATGTTCACCACGAGTCCACGGGTTAACAGGGTGATGCACCAGATAAATGACATTGATCCCAAGAAGTGGTGCTGCGCATCCAGTGACAACTGTCATTTGTACACTAATGCCCGGCCGGTCAACCACTGCCAACATTATTCTTCTCCGAGAATGGGTTGGTTCTTTGGTGATCCTCATATTCGCACGCTGGATGGTTTGACATACACAATTAATGGACTTGGGGAGTACGTTCTCATTGTCACGAACGAAGGCAACTTCACCTTACAAGGTCGAACATCGAAGGCCCTCGACACCAATGGAAACCCAATTCTGGGGACAATATTTTCAGCTTTTGCAGCAAGCGATGCTGATTCCGATAGAGTTCACGTACAAATGAACGACCGCAGAAACGGAATAATCGTATATGCTGCTGAAGAAGACATCACAGGCTGGGTGCATACCGCTGACACTGGTGACGAAAAGTCGTTTGTTGGTCTTGACATAACGCGAGCATCAGCCTTAGCAGTGAATATTTCCTTTGCATCGGGCTTCTCCCTGGATATTAATTTGGCAGCGGGCCAACTGGACGTAACTATTAGTGCTCCGCCTGAATTCATAAACGAGACCCAAGGATTAATAGGCGTGTTCAACGATGACCCCAGCGATGACTTGCTGCCTTCAAATGACACCGTTGCGTTGAATCCAACAGAAACAGAGAGGACTATATTCTACAAGTTTGGAGAGACATGGCGTATCCAGAAGATCGACTCATTATTTAAATATCTGAATGGTACATCGTTCGAAACGTTCGACATTGTCGATTTCACACCAGTGTTCCAAGATGATGTTATGGGAAAGATGACAGATGCTGAGAGAGAATTAGCCGAAGCCATATGTGACGGGAACAATGTGGAATGCATGTTCGATTTAGTTATGACTGGCCAAGCGGAAGTTGCTCAATCAACTTTAAAATTCAACACGAAAAACAACGAGAATGCCAAAAACCTAGCAAACAATAGTCCAAAAATCAATGTGGTCACCATGCTGAACGCAACTGTTGGGGAAGAAGCCGTTTTAAACGTGACGTCGACGGACACTGATGGTGACGTGGTCAGTGTGACTATGTTGTTTGACCTTCCTACCGGAGCAACGTTCGATCCAGCGAGTGGCCATTTTATATGGAGACCTGCAAACGTAGAAACCGTCAACATCTCATTCAGCGCCAGTGATGGCAAAGGTGGAGTCTCTCCAACGGTCGTCGTCACGATCAATATGTGCGATTGTTCTGGCCACGGCGCATGCGTCTTTGAAGAACTGGCTAAAGGACAAAAGCGATCGGACACGTACAGAATGGTTGCATGCGATTGCAACGTTGGATATGGAGGCGATCGCTGCGAAGAAGACGTGGACGGTTGTGCCGACCACCCTTGCATAGTCGGCACCAACTGTACCGACCTAACACCCGAGGAGCAAGTTGCCCAGAAAAAGGCCTTCGTTTGCAGCGAATGTCCAAACGGCTATACTAAAGATGCTGGAATCTGCGTCGATATTGACGAGTGCAGATTGGACTATAACTGCAGTGAAGGCGAACGATGTGCGAACACACCGGGAAGCTACAAATGTGTATGCCAACAAGGTTACAGACTAGATGCAAGTAGCAAGACATGCACTGATATTGACGAATGTGACGAGAAGACATCTGATTGCCAGCATATATGCACAAACAATGCAGGAGGCTTTAGCTGCTCTTGTTTTGAAGGATATACAATGAACACAACTGGCGGTTTCTGTCTACAAGATGCGGATATTGAAGAAAAATGCCGACTTGCACACCTCGAAGATTGTCAGCATGGTTGCCGTAACAATGACGAATCGCGCACCAAGGTGGAATGTTTTTGCCGGAGTGGATACTCAGTTGACGCAACAAACCAAAAGAAATGTAAAGACATTGACGAATGTGCTGAAGGCATCCACTTATGCGAGCATGGATGTATTAACACAGAGGGTGGCTACAAATGTTCATGCAGACCCGGATATGTGCTCGGTGATGACCATCGTTCATGCCAAGCGTGCCTGTATGGCCTATACGGCGTAGACTGTAAAACCATGTGCAACTGTGTTACGTTAAGTACAACATGCAACCCCGTCTCGGGTTGCGAGTGTCCGCCTGGATACTCTGGAGAACAGTGCAGCAACATCAACGAGTGTTTGAACGACACAACGTGTGGCGCTCATACCACGTGTACTGATGTGCCCGGCTCATTCAGGTGTGACTGTCTCGATGGGTACATCCATGTCGACGAAACTGCATGTGAGGCCGCACCATCAAGCAAACAAGTAATTCAGTGGCTGCTGCTGATCCTTGGGACATTGTGCAGCCTCATTCTGCTAATCCTGGTCGTCATTCTCTGCATCGTCTGCATCTGTGGGCGTAGACGTAGACATGTTCGTAGCAGCAATACCGACTACTTGACCAATGACTCTAATCTGTACTGCAGCCCAGCCTCATCGATGCGCCAGATGTTCTGGCAGAAGCGCACTCCTACAATGACGGACACGAACAACGGCGGATTCGACATGTTCGACGAGAATCGATTGAACATAATCAGTCGAGCGATGGCTAAAGCAAATTTCATCGACTGGAGTATAATGCGTAACTTTGCCAGACGCAATGGTGTCGAACAGGCAGGCGAGTTCCATTGAAGTGAACTAAATGAACTGATAAACGGAAACAAAAATTGGACAACAAACAACGCAGGATTAATCACACACAGGATTATCGTCATTAAAAACAATCCAAAGCATTAAGGTGCACAAAATGCATACAATACATTGTTTGAGTAAAGTCGTTCATTTCTGGATTGTTCGTTCTTAAATGCCTGTGTGATTAAAATGTCCGCAGTATATTTTGTTACGTTACAAAATGGAATGGGAATATCAGTGTGTCACAAAGTGTCATTTGGACGTAAGGTTGCACCTTATTTTATATATATATATATATATATATATATATATATATATATATATATATATATGTAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR050567	Family	Mitochondrial Carrier	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000064	Molecular Function	L-ornithine transmembrane transporter activity	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006810	Biological Process	transport	Interproscan
GO:0022857	Molecular Function	transmembrane transporter activity	Interproscan
GO:1990575	Biological Process	mitochondrial L-ornithine transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24898.1 global RNA-seq network