Gene detail

Detailed information of RPACG24797.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24797.1	ASPARTYL/LYSYL-TRNA SYNTHETASE	tig00116300	1990522	2017424	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24797.1

ATGGCAGAAACACTGCACAAACTTCAGCATATCTATGCCAAGTGGGAAACACGTAACCCCCGCCAGGGTAATTTTGGCCACCCAACGCCTTCTCAGTTACACTCAGATGGCTATCATTCTGCTAAGGAGACAGGCAAACAATCATGGACACGGAAGTTCGGAAATATTGGCCCAGCCCCGTTCAGACGGCAAAAGTACAACAGAAGGAAGCCAACTTCTTTGTCAGCTGGTCTGGTGACATCATCCAGTCTTGGTTTCTTTAAATCTGCCCCAACTGTGCTGCCAACTATTATGCAGGCGCGCCCTCTGTTGGGCCGTTGCTGCACATGCATGCCTTCATGCCGGGAGGAATTGTACAATGAGAACATTAAAGAAATGCAACTGCAGAACTTAATGCGATCCTCCACTGAAGTACACTGCAATGGAGCCCCTAAGACATTTAGCATTTACCAGTTTTTACGAGATAACCGCAGCTATAAATATCCTGATGTGGTAGTAGCCACAAGACGCTCTCAAAGAGTAAGACAGGCAATTGAAACCAGCATTCTCAGTGAGATGGGGGAGGAGGAAAGTGATGCGGTCTGTGTCACTCATGTCAGGACGGCGCTCAGGCACCACCGACGTTTCGTGTCAAAAACACTCAGGCATATGAAGGCTCGTGTATCCGACCGTCTGCTCAGGTTCTCAGCGTGGTTGCTTCATCACCTTCTGGCCTGTGTCTTCTCTGCTGTCCTTGTTCACAGTGGACAGATGACAATGCTCCAAAAGGCATCAGAAAGGCAAGTGCCAATGATATTTATTCCAAGTCGCCGAAGTTACTTCGATCATGTTCTTCTATCACTTGTTCTCGTCAGTCATGGTATGAGGGCGCCACTTGTAGCACTGGAGAATGAGTGTCGCATATCCATCTTCAGCCGCATCTTTCAGTGGCTTGGAGTGTTCTTTGTCGAGTTACGTCCAGATTCCTCTTTGGTTGACAGTCCTGTCTACAGTGCAGTTCTTTCTTCTTACATAGAAGAATTACTGAGAAGACAACAGCACCTAGGGTTGTTTGCAGAAGGTCAGAGGTCAACCAATGGTAGAGCGTCACAGCCCAGTGCAGAAATCTTGTCAGGGGTGGTGTCGGCCTATTACGAAGGAGCCATGTTGGATGCCTATGTTGTACCTGTGAGCATCAGCTATGAGAAGCTTCCAGAAGGAAGTTTTTCTGCAAGACAGCTGGGACAAGTCGAGACAGCACCGAGCCTCACTGGCGCCATCTCGTGTTTGTGGAGACTACTACGTGTGAGTCGTGGGAGCGTGCGAGTAGACATCTGTCAGCCGTTCCTACTGCGAGAATTTCTCCATGTGGCTAGTAGTTTTGAGAAGACAGACATGGGGGATGTGAGACGGATGAGAGAGACGGAGGATTTGAAGACGGAGGATGTCGCTGCTCAGTATCCATGTGGTGTAGGTGACACTGGTGATGTTGTGCTTAGTGACGAGCATGTCAACAGTGCGACTACCCTCGCTCAACATATTGTATATGATTGCGTAAACTCGCAGGCAGTAATGAGTACCCACCTCATTGCTTTCCTTCTGCTCAACAAATATAGAAAGGGGGCGAGATTGCCAAATTTGATGAGCAGTTTTGATTGGCTGAAGAAGGAGGTCATTGCCCGTGGTCGTGACCTTGGGTTCACTGGCAGCACCGTTACTGTTGTGAACCATGCGTGTGAACTGCTGGGGTCGGAGCTGGTCAAGTGTTGTCCAGCAACACAATACACGGACTGCAGCAAGACTAACACAGCTGCAGGTATCCAGCCAATCATCACCCTGCCAGGTGTCCTTGACCTTGCTTATTATGCTCAGACAGCAGCATCAGTTTTCATCATGGAAAGCATTATGGCCAATGTCATCCAGTCCATGGTTGACACGGGTCAAAGGTCAACCAACACTGACCTTGACCAGCCACTTTCCAAGGATGCCATTTTGAAACAGAGTAAAATCCTGTGTTGTCAGTTGAAATACGATTATGTGTTCATGCCGCCGTGTGCCTCTCTTGATTCCCAGCTTGTCGATGCTCTCGAACAGTTCCTCTTGTGTGAAGTTCTCCAGGAGGAGAACATCAACGGGTACACTGACAACCAAGAGAGAGCGTGGGCTCAGAGGGTGTCAGCCAGCCTGGTGGCGGATGACGAGGACCAGGAGGAGGAGGAGGGGTGGAGTGTGTCAGACACACTGTACAAGGTGAATTTGAGCACCCCGTACACAGCTGAGAAGTTTGAGTTTCTGCGGGAAGTGATTGCTTCCACCTTAGAGACCCACTATGTGACGTCCTGCTGTCTAGCCACCCTGCTGGATGGTCCACGCACTGAGAGTGAATTTGTTACAAACACACTACAAGTACTGATAAACAGGTCTGAGACTGGCACTGCATCCTATGCGGAGAGTGCATCATTGGATGCAGTTAACAATGCCCTCCGATCGTTTGTTTATCAATCCGTGATGCAGTGTTACTATGACGACGATACTGAAGTGAAAACAGTGTGCTTAAAAGGAGCATATTGTGATCGGAGAACCCTGGAGAAGTTGATTGCGTCTCTGGAGAGCTATAGATCATAG

Transcript

RPACG24797.1

CTGTTCAATAGGTGACACCAGTAAAATAAATAATTGTCCATTCACGCACGTGTGATTGCTAAACATGGCAGAAACACTGCACAAACTTCAGCATATCTATGCCAAGTGGGAAACACGTAACCCCCGCCAGGGTAATTTTGGCCACCCAACGCCTTCTCAGTTACACTCAGATGGCTATCATTCTGCTAAGGAGACAGGCAAACAATCATGGACACGGAAGTTCGGAAATATTGGCCCAGCCCCGTTCAGACGGCAAAAGTACAACAGAAGGAAGCCAACTTCTTTGTCAGCTGGTCTGGTGACATCATCCAGTCTTGGTTTCTTTAAATCTGCCCCAACTGTGCTGCCAACTATTATGCAGGCGCGCCCTCTGTTGGGCCGTTGCTGCACATGCATGCCTTCATGCCGGGAGGAATTGTACAATGAGAACATTAAAGAAATGCAACTGCAGAACTTAATGCGATCCTCCACTGAAGTACACTGCAATGGAGCCCCTAAGACATTTAGCATTTACCAGTTTTTACGAGATAACCGCAGCTATAAATATCCTGATGTGGTAGTAGCCACAAGACGCTCTCAAAGAGTAAGACAGGCAATTGAAACCAGCATTCTCAGTGAGATGGGGGAGGAGGAAAGTGATGCGGTCTGTGTCACTCATGTCAGGACGGCGCTCAGGCACCACCGACGTTTCGTGTCAAAAACACTCAGGCATATGAAGGCTCGTGTATCCGACCGTCTGCTCAGGTTCTCAGCGTGGTTGCTTCATCACCTTCTGGCCTGTGTCTTCTCTGCTGTCCTTGTTCACAGTGGACAGATGACAATGCTCCAAAAGGCATCAGAAAGGCAAGTGCCAATGATATTTATTCCAAGTCGCCGAAGTTACTTCGATCATGTTCTTCTATCACTTGTTCTCGTCAGTCATGGTATGAGGGCGCCACTTGTAGCACTGGAGAATGAGTGTCGCATATCCATCTTCAGCCGCATCTTTCAGTGGCTTGGAGTGTTCTTTGTCGAGTTACGTCCAGATTCCTCTTTGGTTGACAGTCCTGTCTACAGTGCAGTTCTTTCTTCTTACATAGAAGAATTACTGAGAAGACAACAGCACCTAGGGTTGTTTGCAGAAGGTCAGAGGTCAACCAATGGTAGAGCGTCACAGCCCAGTGCAGAAATCTTGTCAGGGGTGGTGTCGGCCTATTACGAAGGAGCCATGTTGGATGCCTATGTTGTACCTGTGAGCATCAGCTATGAGAAGCTTCCAGAAGGAAGTTTTTCTGCAAGACAGCTGGGACAAGTCGAGACAGCACCGAGCCTCACTGGCGCCATCTCGTGTTTGTGGAGACTACTACGTGTGAGTCGTGGGAGCGTGCGAGTAGACATCTGTCAGCCGTTCCTACTGCGAGAATTTCTCCATGTGGCTAGTAGTTTTGAGAAGACAGACATGGGGGATGTGAGACGGATGAGAGAGACGGAGGATTTGAAGACGGAGGATGTCGCTGCTCAGTATCCATGTGGTGTAGGTGACACTGGTGATGTTGTGCTTAGTGACGAGCATGTCAACAGTGCGACTACCCTCGCTCAACATATTGTATATGATTGCGTAAACTCGCAGGCAGTAATGAGTACCCACCTCATTGCTTTCCTTCTGCTCAACAAATATAGAAAGGGGGCGAGATTGCCAAATTTGATGAGCAGTTTTGATTGGCTGAAGAAGGAGGTCATTGCCCGTGGTCGTGACCTTGGGTTCACTGGCAGCACCGTTACTGTTGTGAACCATGCGTGTGAACTGCTGGGGTCGGAGCTGGTCAAGTGTTGTCCAGCAACACAATACACGGACTGCAGCAAGACTAACACAGCTGCAGGTATCCAGCCAATCATCACCCTGCCAGGTGTCCTTGACCTTGCTTATTATGCTCAGACAGCAGCATCAGTTTTCATCATGGAAAGCATTATGGCCAATGTCATCCAGTCCATGGTTGACACGGGTCAAAGGTCAACCAACACTGACCTTGACCAGCCACTTTCCAAGGATGCCATTTTGAAACAGAGTAAAATCCTGTGTTGTCAGTTGAAATACGATTATGTGTTCATGCCGCCGTGTGCCTCTCTTGATTCCCAGCTTGTCGATGCTCTCGAACAGTTCCTCTTGTGTGAAGTTCTCCAGGAGGAGAACATCAACGGGTACACTGACAACCAAGAGAGAGCGTGGGCTCAGAGGGTGTCAGCCAGCCTGGTGGCGGATGACGAGGACCAGGAGGAGGAGGAGGGGTGGAGTGTGTCAGACACACTGTACAAGGTGAATTTGAGCACCCCGTACACAGCTGAGAAGTTTGAGTTTCTGCGGGAAGTGATTGCTTCCACCTTAGAGACCCACTATGTGACGTCCTGCTGTCTAGCCACCCTGCTGGATGGTCCACGCACTGAGAGTGAATTTGTTACAAACACACTACAAGTACTGATAAACAGGTCTGAGACTGGCACTGCATCCTATGCGGAGAGTGCATCATTGGATGCAGTTAACAATGCCCTCCGATCGTTTGTTTATCAATCCGTGATGCAGTGTTACTATGACGACGATACTGAAGTGAAAACAGTGTGCTTAAAAGGAGCATATTGTGATCGGAGAACCCTGGAGAAGTTGATTGCGTCTCTGGAGAGCTATAGATCATAGTAGAAACTGAATCTAGAATCAGTGGCTCAGTCGTGTGTCATGGACGCACGCAGAACATGTCAGGTTAATCATTTATACTATCCTTGATCCCAGCAGTTTTGTCTTCAACCTTTTATAGACTTATCCTGTTTTATGAAGCAAAGTTGGTGAGGTTTGAATGACCAGAATGATACATCCCCAGTGTCATGTACCATAGAATAATGTGCTTATATGAATGGTATGTGTTATTTGTTTAGAATCCTACCACATCCAGTCTGGCCACTAATTGTTATGTAGAACCTTGTGTTAGGAAGATGCGAGAACATTCCACTTGAATTCTTACGAGTTGTTTTAGCATTTAAGCATGCATAGGATAGGGTACAAGTGTTCATGAAATCTCGTTTTGTTTATTATACAAACTTATGCAGTATATCATGCCTATTTTATATAACTTTTTTGTAAATTTGTGAGTTATTACTTTTGTAAAATAAAATTGGTGGTTTAAATTATATATATTTTGTTTAACAACCTTGTTTGTGCTACTTTTATAATAACAAGGATAGTTTATAAACAAGATTTAATGTTGAAAGTATATACTGAAAGCCAATATTAAATTTGATAATGCTGAGGTATTGTTCACATGTTGAATCTTTCACACATAAACTGTTAAATTGAATATGAAATATCAGCTATATCAAGGAGAAAGGGTTAAAATGAAATGACACTTATATAACATGATGGACTTACATTTGAAATAAGGTTCTACTGCTTCATGTTGTGCCAGTTTATGCCATTTTTGTTTTCATCCTATAATCACCTATGTTTTGGAGTTTTAACCTGTGTCGCCTCTGCCATTTAATGTGAAATACAAATAAATTGTCACTGCGCATCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00152	tRNA-synt_2	tRNA synthetases class II (D, K and N)	Domain	Interproscan
PF01336	tRNA_anti-codon	OB-fold nucleic acid binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002312	Family	Aspartyl/Asparaginyl-tRNA synthetase, class IIb	Interproscan
IPR004364	Domain	Aminoacyl-tRNA synthetase, class II (D/K/N)	Interproscan
IPR004365	Domain	OB-fold nucleic acid binding domain, AA-tRNA synthetase-type	Interproscan
IPR004522	Family	Asparagine-tRNA ligase	Interproscan
IPR006195	Domain	Aminoacyl-tRNA synthetase, class II	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR045864	Homologous_superfamily	Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22594	ASPARTYL/LYSYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0004816	Molecular Function	asparagine-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0006421	Biological Process	asparaginyl-tRNA aminoacylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24797.1 global RNA-seq network