Gene detail

Detailed information of RPACG24735.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24735.1	COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER	tig00116300	571765	587707	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24735.1

ATGATGACACCAAAACTGGCTGTGCCACTGGTACTGGGGCCTCTGGAAGAATCTACAGTGCTGGTCACTGGCTTGACTGCGGCGTGTACGAGTGATGACCTGAAGACGTTCTTCTCGAAGATAAATGTACACAAAGACATACAAGACATCACCTTTGGCCAGCAGCCAGGTGTGGCAATGCTCAAGTTCACTAAGCCTCCAGACTTTGACAGTCTGCGGGTGTTGTGCGTCACGCGACCACTGCACGACGACATGATATGTGTACACAGAGTGCCACTCCCTCGCGTTGTCCAAGTTCACAACATCGGAAGCTTGTCAGAAGACATGCTCGAGCTGTACTTCGACAGCAGGAAGCGTAGCGGGGGCGGCAAGGTGGTTCAAGTTAGCGTTCATCGCGACGACGATTACGCCCTCGTTGAGGTGGAAGAACCTGGCATTGTTAATGAGATTCTTGCCAGAGGTTCTCACCAAGTCGATGACCACTCGCTGCACGTGACCGCGTACTATGACTGTCTTGGATCGACACGTGTACGTCGTGATGCAAATATGGCTGTTGAGTCGGTTCACAAAGCGGAAATGGTGCCAGGGATCAAGTCAGTCACCGAGTCCGTGCGAAACCTGGAGGAACACCAGCTGAGAATGTTAAATGCAATGGGTTTCAAAGGGAAGATGCAGAAGAAATACCAAGATCTGACTGTAGTCATTGACTATAGAGCAGGCTCCGTTTGTTTCACCGGCACTCCTTTAAACATCGCAACCGCCAATGCTGATATGCTCGCTGTTTTAGAAAGTATGACTTCCATTCAGTTGGACATGTCTGCAGCACTGACAACGATCCTCGGCAATACGATTGTAACGAAACAGGTCGTGCACGGTTTCAAGAGCAAGAATATCCGAGCCGTCTTCAGCAATGTTGGGGACAAGAAACTCGGCGTTTGGGCATTCAACAAAGAGAACCTGGCCACTGCGGTTGAAGTGATCGAAAGTTGCGTGTGTACGAAGTTAGTCCGTGCTGATATAACGAAGGCTGATTCGAATCGCAAGTGGAAGGATTTGCTGGCGACAGTACAGTCTGACCATGAAGGCTTGTTGAACCTTGATGAAAATGGAGGTGGCATCCTCTTGTCTGGAGCAGTCGCATCAGTGGAACAAGCTGAGAAGAGTATAAACGATTTCCTTTCGCAACTAGTCATCGCTGAGAAGTTTGTTTGCATGAAACACGGCATCGCTGACTACATGGCGAAGTACATGAAGAAAGAAGTCAACGACATTCGGGTCGCGTTCCGAAAAGACAACGTAAAGATTACACTAAGGACGGATGGACCGTGTGGATTTGCCTTGAAAGGAACGAAAGCAGGTCTCGATGGGGCAAGTCACAAATTGCTGGCACTGACACGCCGTGTTAAGGTAAACCGATGCCACGTTGACAGGCCTGGTTCTTCAGCGTTTCTGGCAGGCATAGAAGGAAAGCGAGCTCTTGAGCGACTCCAGGCAGAATTCAAGCTTGTCATCAAGCCTATTGGGACGGGCCAACCAGAAGGTGTTGCAGAGACCGGGGAGAAGGCAAGGGAGAGAAACGTCTTGACAACCGCCGTTCTGCCTGGTGGGGTCACTGTGGAAGTTGTTCAGGGAAACCTGACGAGATTCTGCGCTGACGCCATTGTTAACTTTGCTAATGAACGGCTGGATCACACCGAGGGACTTGCGAAAGCTATCGTCACCGCAGGTGGTCCGCAGATTCAGGAGCAGTGTCACGCCTACGTGGGATATAGTGGCACCATTGAGCCAGGTCAGGTGTGGGTGTCCACGCCGGGCAAGTTGCCTTGTAAACATGTGATCCACGCCGTCTGTCCTACATGGCAAGGTGGTGAACGCGACGAAGATATGGTCCTCGCCGACGCTGTCTCCGAGAGCATGTTGAAAGCGCAACAACTGGGGCTGTGTTCGGTTGCATTTCCAGCACTTAGTTCTGGTGCATTCGGTTTTCCCTTAGCCAAGTACACATTGACCATTATGACAGCGCTGAAAACCTTTCTGGAGAATCACGGAGACACATGTGTCAAGAAAGTTTCGTTGCTTGATCGTGGCAAATCAATCGTCAAATCGTTTGAGAAAAGTCTTCAAATCACATTTGGTTCGCACGTAGCGATGACAACAGATGAAAAAACTGCCGATGGCGACACTGTCTGCAGTGCAGCAGAGAGTCGGGAGACATCCGCGGGGGGAGCAGACATCCCAAGCCTTCCTTCAAACTCCCCTGACGTTGTTTTGAAGACACCAGAAGGCATTACATTGTCTTTGTGCAAATCAGAAATGGCTCGAATGCAGGTTGACGCCATCGTCAATTCGACTGACCCTGGACTGCATCTGGACAGTAGAGGATTGTCCCTTGTTCTTTTACAATCCGGAGGGATGACACTTCAGACAGAATGTCTGGAAATCGCACCCGATGGCATTGAATATGGAGACGTGGTGACGACATCCGGAGGGCAACTGAACTGCCAATTCGTTGTGCACGGTGCTTGTTGCAACTGGGACGGAGGAGCTGGCGACAGTGAATTGGTCCTGAAACAGCTGGTGTCCAACTCGTTCCTAGCTGCACACAAGCGCCACCTTACGTCAATTGCCTTGCCAGCAATAGGGGCAGGTGCACAAGGGTTTCCGCCAGATGTCGTTGCTCGGGTGATGCTGGATGCGTTGCTGACGTTCAGTAACGATAACGCAAGTACTTCGCTTAAAGATGTGCGATTTGTGATGTTTCCAAAAAAGATCCGCACCATAAAGGCATTTGAGAAAACGCTGGGTTCGTGCGACTTATGTCAACACATTTCGTCCGACCCACAACAAGGTGCTCGCACCAAAACGGACGAAGCAATCACACCCGCCCTCATCCAGTTGCGTGCAGAAGACACTGCAGGCCAAAGGCGGTACCAACAGCAGTGCACAACCTTCAACATATTTGCCCGATCGCATTCATCAATTTCCCAAGCGGCGGCAGCCCTGCAACAGATGTGCGTTCAAGAATGTGCAGAGATTATCCTCAAGAGTAAAAGTAATAAGTCTGCCATTTCGAAGCTGACGGACGAGCAGATTTCACAAATAAAATTCCTAGAGAAAACACTTGGTGTGGAAGTAGATATTTGCACGAATCATACCAAAGAGCGCATCGTCATCCGGGGAACAGTGATCAACACAAGTCAAGCACAGTCGGAAATATTAAAGATCTTCATAGATGTTGTTGAAGCTCTCGGTCAGGAAAAGGTCGATTCAGTGATTTCAAAACAGTTTCAGTGGAGATATGCAGAAGGAGCTGTCTTTACAAACTATCGGCCCACTCTCAACTCGCAGCTGGAAATTGCATATCAAAATCAGAAGGACCACTTTCAGTGGAAAGAGGATATTACTGGTCACGTTCGTTGCGTGTCATTTGACACAATGTTGGAGATGTCAAATAGCAGCTGCTCTTCTGTAAGAGTGGAGCGTTGTTTTATCGGAGCTGACACTGATCTGCCGGGAAACTGGTCCAATGTCGCTGCTGCGGACCCGGTGAACTTGCAAGAGCTGCAATCGAGTAGCAGAGAATATCTAAGCGTGGAGGACCAGTTCCTCTCTTCTGCGCACGGAACCGTTGAAAAAGTTCTCAAAATTGAGAGAGTTCAAAATCCAAGTCTGTATCGCCAATACGTGTTACGCAAAGACGAAATGAAGAAACGTAGGCAGCGCCCTGCAGTCATTGAGCGGACACTGTGGCACGGAACAAGTGGCGAGGCCGTGCACAGCATCAACAGGGGCGGATTCAATCGCAGTTACTGTGGCAAGAACGCGGCTCTGTATGGCAAAGGTGTTTACTTTGCTGTTGACTCTGAGTACTCCATGCGAGACAAATACGCAACTCCGGATGTTACTGGAGTAAGACGAGTATACAGGTCTCTCGTCTTGACGGGTGATTACACGACTGGCCAAAAAGGTTACCACGTTCCTCCAGACAACCCTTCTACCCCCGGGGTGAAGTTCGACACGGTCGTTGACAACGAGTTTGATCCCAGCATATTTGTCGTCTTCTTAGATAACCAGGCATATCCTGAATATCTGATCACATTCACGTCAAGTTATGTGCATCCTACAGGGGAGAATGCAGCTGAGTAA

Transcript

RPACG24735.1

CTGACTCCAACATCTAAGAAGTCACCTTATAACAACGCCGAAGTGCAAGTGACGATGATGACACCAAAACTGGCTGTGCCACTGGTACTGGGGCCTCTGGAAGAATCTACAGTGCTGGTCACTGGCTTGACTGCGGCGTGTACGAGTGATGACCTGAAGACGTTCTTCTCGAAGATAAATGTACACAAAGACATACAAGACATCACCTTTGGCCAGCAGCCAGGTGTGGCAATGCTCAAGTTCACTAAGCCTCCAGACTTTGACAGTCTGCGGGTGTTGTGCGTCACGCGACCACTGCACGACGACATGATATGTGTACACAGAGTGCCACTCCCTCGCGTTGTCCAAGTTCACAACATCGGAAGCTTGTCAGAAGACATGCTCGAGCTGTACTTCGACAGCAGGAAGCGTAGCGGGGGCGGCAAGGTGGTTCAAGTTAGCGTTCATCGCGACGACGATTACGCCCTCGTTGAGGTGGAAGAACCTGGCATTGTTAATGAGATTCTTGCCAGAGGTTCTCACCAAGTCGATGACCACTCGCTGCACGTGACCGCGTACTATGACTGTCTTGGATCGACACGTGTACGTCGTGATGCAAATATGGCTGTTGAGTCGGTTCACAAAGCGGAAATGGTGCCAGGGATCAAGTCAGTCACCGAGTCCGTGCGAAACCTGGAGGAACACCAGCTGAGAATGTTAAATGCAATGGGTTTCAAAGGGAAGATGCAGAAGAAATACCAAGATCTGACTGTAGTCATTGACTATAGAGCAGGCTCCGTTTGTTTCACCGGCACTCCTTTAAACATCGCAACCGCCAATGCTGATATGCTCGCTGTTTTAGAAAGTATGACTTCCATTCAGTTGGACATGTCTGCAGCACTGACAACGATCCTCGGCAATACGATTGTAACGAAACAGGTCGTGCACGGTTTCAAGAGCAAGAATATCCGAGCCGTCTTCAGCAATGTTGGGGACAAGAAACTCGGCGTTTGGGCATTCAACAAAGAGAACCTGGCCACTGCGGTTGAAGTGATCGAAAGTTGCGTGTGTACGAAGTTAGTCCGTGCTGATATAACGAAGGCTGATTCGAATCGCAAGTGGAAGGATTTGCTGGCGACAGTACAGTCTGACCATGAAGGCTTGTTGAACCTTGATGAAAATGGAGGTGGCATCCTCTTGTCTGGAGCAGTCGCATCAGTGGAACAAGCTGAGAAGAGTATAAACGATTTCCTTTCGCAACTAGTCATCGCTGAGAAGTTTGTTTGCATGAAACACGGCATCGCTGACTACATGGCGAAGTACATGAAGAAAGAAGTCAACGACATTCGGGTCGCGTTCCGAAAAGACAACGTAAAGATTACACTAAGGACGGATGGACCGTGTGGATTTGCCTTGAAAGGAACGAAAGCAGGTCTCGATGGGGCAAGTCACAAATTGCTGGCACTGACACGCCGTGTTAAGGTAAACCGATGCCACGTTGACAGGCCTGGTTCTTCAGCGTTTCTGGCAGGCATAGAAGGAAAGCGAGCTCTTGAGCGACTCCAGGCAGAATTCAAGCTTGTCATCAAGCCTATTGGGACGGGCCAACCAGAAGGTGTTGCAGAGACCGGGGAGAAGGCAAGGGAGAGAAACGTCTTGACAACCGCCGTTCTGCCTGGTGGGGTCACTGTGGAAGTTGTTCAGGGAAACCTGACGAGATTCTGCGCTGACGCCATTGTTAACTTTGCTAATGAACGGCTGGATCACACCGAGGGACTTGCGAAAGCTATCGTCACCGCAGGTGGTCCGCAGATTCAGGAGCAGTGTCACGCCTACGTGGGATATAGTGGCACCATTGAGCCAGGTCAGGTGTGGGTGTCCACGCCGGGCAAGTTGCCTTGTAAACATGTGATCCACGCCGTCTGTCCTACATGGCAAGGTGGTGAACGCGACGAAGATATGGTCCTCGCCGACGCTGTCTCCGAGAGCATGTTGAAAGCGCAACAACTGGGGCTGTGTTCGGTTGCATTTCCAGCACTTAGTTCTGGTGCATTCGGTTTTCCCTTAGCCAAGTACACATTGACCATTATGACAGCGCTGAAAACCTTTCTGGAGAATCACGGAGACACATGTGTCAAGAAAGTTTCGTTGCTTGATCGTGGCAAATCAATCGTCAAATCGTTTGAGAAAAGTCTTCAAATCACATTTGGTTCGCACGTAGCGATGACAACAGATGAAAAAACTGCCGATGGCGACACTGTCTGCAGTGCAGCAGAGAGTCGGGAGACATCCGCGGGGGGAGCAGACATCCCAAGCCTTCCTTCAAACTCCCCTGACGTTGTTTTGAAGACACCAGAAGGCATTACATTGTCTTTGTGCAAATCAGAAATGGCTCGAATGCAGGTTGACGCCATCGTCAATTCGACTGACCCTGGACTGCATCTGGACAGTAGAGGATTGTCCCTTGTTCTTTTACAATCCGGAGGGATGACACTTCAGACAGAATGTCTGGAAATCGCACCCGATGGCATTGAATATGGAGACGTGGTGACGACATCCGGAGGGCAACTGAACTGCCAATTCGTTGTGCACGGTGCTTGTTGCAACTGGGACGGAGGAGCTGGCGACAGTGAATTGGTCCTGAAACAGCTGGTGTCCAACTCGTTCCTAGCTGCACACAAGCGCCACCTTACGTCAATTGCCTTGCCAGCAATAGGGGCAGGTGCACAAGGGTTTCCGCCAGATGTCGTTGCTCGGGTGATGCTGGATGCGTTGCTGACGTTCAGTAACGATAACGCAAGTACTTCGCTTAAAGATGTGCGATTTGTGATGTTTCCAAAAAAGATCCGCACCATAAAGGCATTTGAGAAAACGCTGGGTTCGTGCGACTTATGTCAACACATTTCGTCCGACCCACAACAAGGTGCTCGCACCAAAACGGACGAAGCAATCACACCCGCCCTCATCCAGTTGCGTGCAGAAGACACTGCAGGCCAAAGGCGGTACCAACAGCAGTGCACAACCTTCAACATATTTGCCCGATCGCATTCATCAATTTCCCAAGCGGCGGCAGCCCTGCAACAGATGTGCGTTCAAGAATGTGCAGAGATTATCCTCAAGAGTAAAAGTAATAAGTCTGCCATTTCGAAGCTGACGGACGAGCAGATTTCACAAATAAAATTCCTAGAGAAAACACTTGGTGTGGAAGTAGATATTTGCACGAATCATACCAAAGAGCGCATCGTCATCCGGGGAACAGTGATCAACACAAGTCAAGCACAGTCGGAAATATTAAAGATCTTCATAGATGTTGTTGAAGCTCTCGGTCAGGAAAAGGTCGATTCAGTGATTTCAAAACAGTTTCAGTGGAGATATGCAGAAGGAGCTGTCTTTACAAACTATCGGCCCACTCTCAACTCGCAGCTGGAAATTGCATATCAAAATCAGAAGGACCACTTTCAGTGGAAAGAGGATATTACTGGTCACGTTCGTTGCGTGTCATTTGACACAATGTTGGAGATGTCAAATAGCAGCTGCTCTTCTGTAAGAGTGGAGCGTTGTTTTATCGGAGCTGACACTGATCTGCCGGGAAACTGGTCCAATGTCGCTGCTGCGGACCCGGTGAACTTGCAAGAGCTGCAATCGAGTAGCAGAGAATATCTAAGCGTGGAGGACCAGTTCCTCTCTTCTGCGCACGGAACCGTTGAAAAAGTTCTCAAAATTGAGAGAGTTCAAAATCCAAGTCTGTATCGCCAATACGTGTTACGCAAAGACGAAATGAAGAAACGTAGGCAGCGCCCTGCAGTCATTGAGCGGACACTGTGGCACGGAACAAGTGGCGAGGCCGTGCACAGCATCAACAGGGGCGGATTCAATCGCAGTTACTGTGGCAAGAACGCGGCTCTGTATGGCAAAGGTGTTTACTTTGCTGTTGACTCTGAGTACTCCATGCGAGACAAATACGCAACTCCGGATGTTACTGGAGTAAGACGAGTATACAGGTCTCTCGTCTTGACGGGTGATTACACGACTGGCCAAAAAGGTTACCACGTTCCTCCAGACAACCCTTCTACCCCCGGGGTGAAGTTCGACACGGTCGTTGACAACGAGTTTGATCCCAGCATATTTGTCGTCTTCTTAGATAACCAGGCATATCCTGAATATCTGATCACATTCACGTCAAGTTATGTGCATCCTACAGGGGAGAATGCAGCTGAGTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07258	COMM_domain	COMM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017920	Domain	COMM domain	Interproscan
IPR047155	Family	COMM domain-containing protein 4/6/7/8	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16231	COMM DOMAIN-CONTAINING PROTEIN 4-8 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0032088	Biological Process	negative regulation of NF-kappaB transcription factor activity	Interproscan
GO:0051059	Molecular Function	NF-kappaB binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24735.1 global RNA-seq network