Gene detail

Detailed information of RPACG24696.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24696.1	DNA2/NAM7 HELICASE FAMILY MEMBER	tig00116229	2573793	2595090	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG24696.1

TACAGCCTCGCTAGCGAAGGTCAGCAATGCAAGTTGGTCGCTAGGAGGCGTAAGAATCGCCCTGGGGGTGAAGACCTCTGAACATTTCATTTGCACGGGCACTAGACGTCTTATTACATCGCACAGGCATGCTGAGCGCGAACAATTAAACGGTTGTTTGCATCGGAACTACAATTTCTCCCTGGCCACATTTACGTAGACGACGACCACGACCATGGCGACTAACGAGGATTTTGCATTCTCAAGTTGTTTCTCTCTAAAGACAGGCTACATGTACTGCGATAACGTGCGAATCAAGACGATCCAAGATGCACTTTCCGACCAACTTGACCAACCGTCGCCCTGCGTTGTCTACAGCGAAAGTAGGATACGTGAAAATGTAGGCGCCTATTTAGAAGCCGTGGAGAAAGCTAATATCCCGTGCTTGCTTGGCTACGCGGTCAAGGCAAACTACAACCCGGCCATTCTGTCCGTAATGAAGGACAATGGTTGCGTTGTCGTGACGGTCAGTGGCAACGAGGTGAAGCTGGCTCTACGGACGGGCTTCTCCGCGGAATGCGTCATCTACAACGGCAACGGGAAGCAATCGTGGGAGACGGAATTAGCTGTCCGACACGGGTGTATCATCAACATCGATTCTGGTTATGATCTGAGGCACATCGCGCAAGAAGCGAGGAAACAGAGGAAGACTGCGAGGGTTTTCCTTCGCGTCAACCCCGACATAGATCCCCGCGTTCACGACTTCATTGCGACCGGATGTGGAAAGAGCAAGTTCGGGGTGCCGAAAGCGGATGTCGCCTGTATGCTGGACGACATTGCTGCAGAGCCGTTGCTGAATCTACTTGGACTACACTGCCACCTGGGCTCCACCATTGACGATGTCAACGTGTTCAGAACATGTGTGGACGTGATGCTGGAGGAGACGACCAAGGCGAAACAAGGCGGTAGATTCCCCCATCTGAAGTACCTCAATCTGGGCGGCGGCTTGGGCATCGACTATAGGAAACACGCAGCTAGAACGTGTGCTCCCGATTCGAGACAGATGCTCGTAACAAGAGCCATGCCGACCCCGAATGACTTGCTGACCGCTGTGAGTGAGCGACTGATTGACAGCGGCCTCACACTTGTCCTCGAGCCAGGCAGATCGCTCGTCGGGGACACCGCTATCCTCGTTTCCAAGGTGACCGGGTGCAAGCGAAATGGAAACACCAATTACATCGTAGTTGACGCAGCCATGACCGAGCTGATCCGGCCGTCCTTATATTCCGCCTACCATCACATCGAGCCGACGGAGCCCTTCCTCTCTCACGCCGACCATGACCTCTTCAATGTCGTCGGACCCGTCTGTGAAAGCACCGACGTCATGGGCAAGGAGAGATACCTGCCGCACCAACGTGAAGGAGCCGGACTCGCCGTATTTGATGTCGGCGCCTACGGCTCTTGCATGGCTTCGAACTATAACATGAGGTGTCGGCCCGCGGAAGTGATGGTAAGCGGCGACAACTGGCGTATTATTCGGAAACCGGACAGCGTGGACGATTTGTTGCGACCTTTCACCGACTTGCCAACGACTGCAACCTTGTTAAACGGCGAGCCAAATTGATGAATTTGTCACCGTCCACAGGATACGCATAACTATGTGTTGGTCGGAGCAATCGCTAGCCTATAATAGTCGGTGTACTGTGTGTATAAAGAATATAAATATCCGCTAGTTTCACACGCCAATAGGCCTTCAATCATGTGAAAATGTCTTCTCAAACGTATTTAATTTACGGTAGTTTTGTCGCGAACCGAATGGAGTATATCTGATAGCAACAAGTTCACAACCAACAAACACATGTGTCTACTTGCCGTACGTGTGAGATTGGGATTGGTCATCTTAACTAGCGTGACTGCCGGTGTTACTGGTATTCCACCTCATGTCTCAAACGTTACCAAAGTATCTTTAAAGATGCAGTCTGGTTTTAATTACCTGTTTAAAGCAGTTTACCAAAGTTAATATACACCGCGATCAATATTTGTTGATTAGGTATACTTACTAATCTGTGTCACTTTGTAATTTCATTCATTATTTTGAAAAAAGGAGGCACTGACGAACAAATAAGGAAGTTGGGATTTCCCTCTCCGTTCCTCTTTCCTGGTATGTCGTTTCTTTCCTTCTATTCGATTACGAAAATAGTAATATTTTGTACATGGATAGTAATCGTAATATATATGTAAACAAATCCAGAACATACTAGTTTATAACAAACATTTGCTGAATACGGCCTAAGCCTATGGCTTGCGTGACACGATTGAGCAATATATGTATATCTGATACATATTGCTTGATTAATGTCAACAGCCAATTCGTTGAACTAGTAATTCTCCGAATCGTAATGCTGTCCTGCTCTTGTTTTTATTCAAGTAGATTGCTTTAAACCGCAGCGTCTTGCATGACAACACTTTCTCGGGCAGAAATGTATGTTGTCAATAATAGAAATGTTTACAGTAAGACACTATCGTGATTCATGACATGAAAATAATTACACACGAGCCATTCCAAACAGTGTAACTTTACAAGAACCTATCCGTCAAATAACTGCTAGTATAACTAACATGTACATTGAATTTATAGGTATAGCATAGTTCCATTGCAAGAGTTTGCCAAGAATCGCCTTAACCTTTAAAGTTGCATTGTTTCAGCTATTGAATACTGGTGGATCGCTCACTAGTAAACGAACAGCACACACTTACGATATTCTTGAAAATGTGTGCATATCTGGTAGTGAGATCATTCAATTAAACACTTACATAGCAAGTGTTTAAATATGTAATAGGAAAAGTTGTTCTGCTTTTGTTTTGTGAAGAAAAATGTATAATGGCACACATTGTCAGAATTCACATTATTTTTTTCTACGTCATACCAGTGTTTATGCTGGCAGTTATCAATGGTGTTTTTGCGTCGTACTGGGAGTGGTCTATTAACACATGTCGTAGAAAGCAAAGCAGTAGATGAACATTCTACAAGATAACTACCGTCCATAGCGACAACCTGGCCATGTGAGATACATTGCGTAGTTTCGATGGTGTCCATAAGGTACAGGTTTTACTGTATGCACATAAGTAATTTGGATGTCTGCTTCTGTACTATAATATCAAATTTAAGAAATAAAATTATGTAACATAAAAAGGGCACTTGTGTATTGTGTTTGTGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTTGATGTATGACTTACCTGGTTTGCTTATTTGTAATGTGTCTTTTTCCGCATATAAGTCCCTTACACACACACGTACGCACGCATTCACACACGCAACATACAAACACCCTCGCACGCGCGCACACACATTGCTGCTAAAAGTAAACATTTCAGATTGTTGCTTAGATTGTATTTATTAAATGTATAACAAAGTAATA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01424	R3H	R3H domain	Domain	Interproscan
PF01428	zf-AN1	AN1-like Zinc finger	Family	Interproscan
PF13086	AAA_11	AAA domain	Domain	Interproscan
PF13087	AAA_12	AAA domain	Domain	Interproscan
PF21138	SMUBP-2_HCS1_1B	Helicase SMUBP-2/HCS1, 1B domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000058	Domain	Zinc finger, AN1-type	Interproscan
IPR001374	Domain	R3H domain	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR004483	Family	Helicase SMUBP-2/Hcs1-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035896	Homologous_superfamily	AN1-like Zinc finger	Interproscan
IPR036867	Homologous_superfamily	R3H domain superfamily	Interproscan
IPR041677	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR041679	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR047187	Domain	Upf1-like, C-terminal helicase domain	Interproscan
IPR048761	Domain	Helicase SMUBP-2/HCS1, 1B domain	Interproscan
IPR050534	Family	Coronaviruses polyprotein 1ab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43788	DNA2/NAM7 HELICASE FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004386	Molecular Function	helicase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0043139	Molecular Function	5'-3' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24696.1 global RNA-seq network