Gene detail

Detailed information of RPACG24558.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24558.1	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	tig00116229	210203	229993	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24558.1

ATGATGGCAAAGAAGCAGGAGATGAAGTTTCTCCCTCTGCTCTCAAAAGAAGAAAAAGAAGCACTTCTTGACAAAAAGATTGAAGAAATGAGGCGTAAAAATGCTGCCAAAGAAAAAAGATTCCGCGAAGTGGAAGCTGATAAGAAGGCATTTGAAAGCACAGTGCAGCAGAAGTCTTCAGCCACATCACCCATTTCACAGAAACCACCACATGCAAATGGCGTATCAGGTGGCATTAAGAATAGGCTGGGCATGGGCCGAGGGAGAAGGCTGGAAAAGATGAGTAAACAGAAGCTTCATGCTCCGGAGTATGAAGCAAAGAAACAGCAGCAGCAGGAGGAGGAGGAGGACGGCCCAGGCGATGGTCCTCCACCTGATCCCGGCTACCGGTTCCTTTCGGACCCCAGTCGGGAAGGTCCCCTACCCAGAGACCCTCAAAAGCCGCCAGACCATGCATTCAAGCGACACCCTCGCAACTTTGGGGGCGACACAGACTTCAAGGCGATCCCGTCTAAGGTGAAACAGGAGAAAGAGAAACAGAGTCGTCAGTTGGCTCGGGCCCCACGCTCGGAGCGAGACAAGGAGCTGCAGATGACTGGAAGAGAACGGAGGGAGTATTCTGAGTGGAAGAATGAGAGACAGAAGATTGACCAGGATCGCATTGAGAGGCACAGGAAGACAACAGGGGAGTGGAAGAGGGAGTGGGACTCGAACAAACAGGACCAGGGGTTCACCGATGCACCTGTTCCTCCAGAGTCCCAACACACAGAGCCTGGTAGGCGCCCAGCTGGACGCATTGGCAGTGGCCGATTTGACCGAGGGGTCAGAGATGAGCCAAGGCCAGTGCGTGTATTGACCGGTGGTCAGGCGGCCCAGAAAGATTGGCGAGAGCCACACGTAGGAGGCGACACCAGTGGGACTGACCGTCACGTGCAGTGGTCGCCACGACGGCGTCCGCTGTCTCGAGACTTTGATGACGTGTCGGGTTTGGACCCTGAATACAAGGATGGGAACCCGAGGAAGCGTGTGTCACTGCACGGCAACAGCGAGCGTCCTCCGCTGAAGAGCCGCCTGTCACAGGGCAGCGATGATGGTCGCTCCGTGGAGGAACACAATGATTCGCTCATCATCAATGTCTTCATGGACAGTCGAACAGGTTTTGTGTCGCGATCTGGCACACAGAAGTCGCCAGAAGGCACAGGCCGTCCTGGCTTTGCGTCGCGGTCTGACGGTCAGCGAACACCTGAAGCAGTGAGCAGGAATGCTTACTCCACCGGCCGAGCCCCGCCCAGTCCCACCTCCAGTCCACGCAAACTGCGCCTGAAGCGTCCTGATCGCAACAGTCGATTGAAGAACCGTGACCCTCGACCCCGTGACCCTGCACAGCACGAGGACGCCACCAACTGGCGGAAGAGTGCGAAAGGCGTTCACTTTGAAGATTGGCCAAGCGTGCGAGTTCCGCCAGTTGACGTACGCATGGTTGATGAGAAACCGCGTGACACGTCAAGACAGGCAGGAAGTGTGAAAGGGGAGAGGGAGGAACGCACGAGTCGCGTGTCACCTGACACTGGTGATGCGCACGCATGGGCGGAGCGTAAGACGAAGACAGCCCACCAGAAGACGCGACGTCATCGACGCAGGAGCACAAACGAAGACAGTGGCAGTGACGTCCACAACAGCAGTGCAGAGTCTCTGGAACGCTTCATTGAGGAGAACACGTTGCATCTAGATGTACACATGGACCTCCCTAGTCTGATCCCGCCCTCTCAAGACCCACTCTTCAGCTCCCCTGAGAACATCATCAAAACTCCTGTCGGCTACGAACATGTCCTCGACTGGAGCACGGTGACGCCTGATGATGACATTGACGTTTCCGATGTCGTCTACGGAAAACGATCCCCGCAGGAGAAGCCAAGAGGAAAGGTGGGGATGAACAGGGAGAGGCAGTCCCGCAACCGTGAAGAAGTCATTGACTCAGCCAGCAGAAAGAATAGAGAGGGGAAAGGTCATGGTGAGGCTAGAGGTCAAGGCAGTATTGTGGACAAAGAAGCAACGAAGGATGCAAAGAAAGTTGAGAGTTCAACGAAGGGTGAAACTTCAAATGGCACAAGGACAAAAACCAATACCTGTGGGCACGGCAAAGATAAAACTGTACCGGATCAATCAAGCGACAATAGCTGCACCTTGAAGGCTCCCGGTAAGAATGGCAGTATTGATTGCGGCAGTTCAGCTGTATCAGGTGAAGCGGCAGAAGTAGCTGCAGCTGTGTTGAATGAAATAGCAGAGGACGCCATAGCTGCATCAGGTAAGGCGGCGCAGGAAGGAGACGAGGCAAGCTCTGTGACCGGTAACAGTGTCACTGAAGGACTGACTGACAAGACACACGCTGTCACAGAAACATCTGTTAGTGAGGCTGTGGATGACGTAGCCACAGGTGACGTGAAAGATATGTCTGAAAACGAAGCAAAAGGAGAGGTAGCTGAAAAAGAGAAGAAAGGAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAAATGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGTGGAGAAAGGAGAGGTAAATGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGAGGAGAAAGAAGAGGTAACTGAAAAAGAGGAGAAAGAAGAGGTAATTGAAAAAGAGGAGAAAGAAGAGGTAAATGAAAAAGAGGAGAAAGGAGAGGTAATTGGAAAGGAGGAGAAAGAAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAATTGGAAAAGAGGAGAAAGAAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGTGGAGGAAAAAGAGGTAACGGAAAAAGAGAAGACAGCGGTAGCTGCAGAAGAGGAGATGGGAGAGAAAGCTGCTATAGAGAAGGAAGGGGTAGCTGAAATGGCAGAGAAAGAGGAGAAAGAAGTTGCTGCAAAAGATACGGAAGAAGTAACTGAAAAAGATGGAAAAGACGAGGTACCTGCTAAAGAGAAGAATATAGAGATAGATGCAAATAAGGACAAGGAAGAGGTAACTGCAGTAAAGAAGGAAGATGTAGCTGGAAAAGAGGAAGAGGTAGAGTTAGATGTAAAAGAGGAGAAACAAGAGGAAACTGAAACAGAGGAGAAACAAGAGGAAACTGAAACAGAGGAGAAACATGAGGAAACTGAAAAAGAGGAAAAACAAGAGGAAACTAAAAAAGAGGAGAAACAAGAGGAAACTGAAACAGAGGAGAAAGAACAGGTTTCCAAAAAGCAGATGGAAGAGATAGTAGAAAAACATTGA

Transcript

RPACG24558.1

GTTTCTAGTACCTAGTTCCCAGTAGCGGTGTTATTTGTTATCCAGCTCAGAAGTTTGACTTGGGCTGCACCAATACGGAGTCATCCGAGACGCAGCACAAAGCAGGCGGGATGATGGCAAAGAAGCAGGAGATGAAGTTTCTCCCTCTGCTCTCAAAAGAAGAAAAAGAAGCACTTCTTGACAAAAAGATTGAAGAAATGAGGCGTAAAAATGCTGCCAAAGAAAAAAGATTCCGCGAAGTGGAAGCTGATAAGAAGGCATTTGAAAGCACAGTGCAGCAGAAGTCTTCAGCCACATCACCCATTTCACAGAAACCACCACATGCAAATGGCGTATCAGGTGGCATTAAGAATAGGCTGGGCATGGGCCGAGGGAGAAGGCTGGAAAAGATGAGTAAACAGAAGCTTCATGCTCCGGAGTATGAAGCAAAGAAACAGCAGCAGCAGGAGGAGGAGGAGGACGGCCCAGGCGATGGTCCTCCACCTGATCCCGGCTACCGGTTCCTTTCGGACCCCAGTCGGGAAGGTCCCCTACCCAGAGACCCTCAAAAGCCGCCAGACCATGCATTCAAGCGACACCCTCGCAACTTTGGGGGCGACACAGACTTCAAGGCGATCCCGTCTAAGGTGAAACAGGAGAAAGAGAAACAGAGTCGTCAGTTGGCTCGGGCCCCACGCTCGGAGCGAGACAAGGAGCTGCAGATGACTGGAAGAGAACGGAGGGAGTATTCTGAGTGGAAGAATGAGAGACAGAAGATTGACCAGGATCGCATTGAGAGGCACAGGAAGACAACAGGGGAGTGGAAGAGGGAGTGGGACTCGAACAAACAGGACCAGGGGTTCACCGATGCACCTGTTCCTCCAGAGTCCCAACACACAGAGCCTGGTAGGCGCCCAGCTGGACGCATTGGCAGTGGCCGATTTGACCGAGGGGTCAGAGATGAGCCAAGGCCAGTGCGTGTATTGACCGGTGGTCAGGCGGCCCAGAAAGATTGGCGAGAGCCACACGTAGGAGGCGACACCAGTGGGACTGACCGTCACGTGCAGTGGTCGCCACGACGGCGTCCGCTGTCTCGAGACTTTGATGACGTGTCGGGTTTGGACCCTGAATACAAGGATGGGAACCCGAGGAAGCGTGTGTCACTGCACGGCAACAGCGAGCGTCCTCCGCTGAAGAGCCGCCTGTCACAGGGCAGCGATGATGGTCGCTCCGTGGAGGAACACAATGATTCGCTCATCATCAATGTCTTCATGGACAGTCGAACAGGTTTTGTGTCGCGATCTGGCACACAGAAGTCGCCAGAAGGCACAGGCCGTCCTGGCTTTGCGTCGCGGTCTGACGGTCAGCGAACACCTGAAGCAGTGAGCAGGAATGCTTACTCCACCGGCCGAGCCCCGCCCAGTCCCACCTCCAGTCCACGCAAACTGCGCCTGAAGCGTCCTGATCGCAACAGTCGATTGAAGAACCGTGACCCTCGACCCCGTGACCCTGCACAGCACGAGGACGCCACCAACTGGCGGAAGAGTGCGAAAGGCGTTCACTTTGAAGATTGGCCAAGCGTGCGAGTTCCGCCAGTTGACGTACGCATGGTTGATGAGAAACCGCGTGACACGTCAAGACAGGCAGGAAGTGTGAAAGGGGAGAGGGAGGAACGCACGAGTCGCGTGTCACCTGACACTGGTGATGCGCACGCATGGGCGGAGCGTAAGACGAAGACAGCCCACCAGAAGACGCGACGTCATCGACGCAGGAGCACAAACGAAGACAGTGGCAGTGACGTCCACAACAGCAGTGCAGAGTCTCTGGAACGCTTCATTGAGGAGAACACGTTGCATCTAGATGTACACATGGACCTCCCTAGTCTGATCCCGCCCTCTCAAGACCCACTCTTCAGCTCCCCTGAGAACATCATCAAAACTCCTGTCGGCTACGAACATGTCCTCGACTGGAGCACGGTGACGCCTGATGATGACATTGACGTTTCCGATGTCGTCTACGGAAAACGATCCCCGCAGGAGAAGCCAAGAGGAAAGGTGGGGATGAACAGGGAGAGGCAGTCCCGCAACCGTGAAGAAGTCATTGACTCAGCCAGCAGAAAGAATAGAGAGGGGAAAGGTCATGGTGAGGCTAGAGGTCAAGGCAGTATTGTGGACAAAGAAGCAACGAAGGATGCAAAGAAAGTTGAGAGTTCAACGAAGGGTGAAACTTCAAATGGCACAAGGACAAAAACCAATACCTGTGGGCACGGCAAAGATAAAACTGTACCGGATCAATCAAGCGACAATAGCTGCACCTTGAAGGCTCCCGGTAAGAATGGCAGTATTGATTGCGGCAGTTCAGCTGTATCAGGTGAAGCGGCAGAAGTAGCTGCAGCTGTGTTGAATGAAATAGCAGAGGACGCCATAGCTGCATCAGGTAAGGCGGCGCAGGAAGGAGACGAGGCAAGCTCTGTGACCGGTAACAGTGTCACTGAAGGACTGACTGACAAGACACACGCTGTCACAGAAACATCTGTTAGTGAGGCTGTGGATGACGTAGCCACAGGTGACGTGAAAGATATGTCTGAAAACGAAGCAAAAGGAGAGGTAGCTGAAAAAGAGAAGAAAGGAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAAATGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGTGGAGAAAGGAGAGGTAAATGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGAGGAGAAAGAAGAGGTAACTGAAAAAGAGGAGAAAGAAGAGGTAATTGAAAAAGAGGAGAAAGAAGAGGTAAATGAAAAAGAGGAGAAAGGAGAGGTAATTGGAAAGGAGGAGAAAGAAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAATTGGAAAAGAGGAGAAAGAAGAGGTAACTGAAAAAGAGGAGAAAGGAGAGGTAACTGAAAAAGTGGAGGAAAAAGAGGTAACGGAAAAAGAGAAGACAGCGGTAGCTGCAGAAGAGGAGATGGGAGAGAAAGCTGCTATAGAGAAGGAAGGGGTAGCTGAAATGGCAGAGAAAGAGGAGAAAGAAGTTGCTGCAAAAGATACGGAAGAAGTAACTGAAAAAGATGGAAAAGACGAGGTACCTGCTAAAGAGAAGAATATAGAGATAGATGCAAATAAGGACAAGGAAGAGGTAACTGCAGTAAAGAAGGAAGATGTAGCTGGAAAAGAGGAAGAGGTAGAGTTAGATGTAAAAGAGGAGAAACAAGAGGAAACTGAAACAGAGGAGAAACAAGAGGAAACTGAAACAGAGGAGAAACATGAGGAAACTGAAAAAGAGGAAAAACAAGAGGAAACTAAAAAAGAGGAGAAACAAGAGGAAACTGAAACAGAGGAGAAAGAACAGGTTTCCAAAAAGCAGATGGAAGAGATAGTAGAAAAACATTGATGCAGCTGGAATGTCTGCAAGAGACAGACATGAGGTCACGAGGAAGGCACTGGTGGACATTATCATAGTTAAAATGTTGAGGCACAGCTTTTTGCCAGTGATTAATGTCATAGTTGACAACCAGTAGTGTGGCATTTCTGGGAATGTTGGTCTATTTTGAAGTATTAATTTTAGAAAACAGATGCTACCAAAACATTGTCATTGATCAAAATGTACTGTGTATTTAGGCTTTAGTCAGACAGCAAGTTCTGGAAGTGCTACATGGGAATATGACTAAGGCGCTTCAGAGGATGCATTTATATATATAAGGGTAGTTGAAAATGTACTTAAATGTGCTTGTATATTTATCGATACATCTAGTAAATTAATTTGATGTAGGACACATATTGGCTATACGATATCATGTTGTATTAAAAGTCAACATGTGAAGTACATGTATGACTATTTAGCATAGTGTATATGTATATATTATAGATGATAATAAATTATGCGAAGAAATTGGTTAGACCATAGTGCAGGGGATATATTATTATTATACTGTATATAAAATGCCTTAAATTAATATGGAGTTTGAGTATGTAACAGTAAGCTACGACAAATAATCTACCCATGGTTTGTCTCTGTTAAACTGCCTTCTAATGCATTGCATCACCTTAGCTTGTGCATAGTTTTTAAATGCATTGTGGAAGGCGGCCAGACTGAACACGTATGTGTTGATATGTATCTTTGAAATGTGACAGTGGGTACCCATTTTGTCAATGCATGCCCTACTGGACTGTCAATGCAATGTATATGTTGCACACGCACGCGTGGCGCGGCTTCTACATCTGCATTTTGGTGGACATCTTGTGTACAGATTCAAGTGTCTTGAGAGTTTACACTGTAAATTTACAACCGGGTATTTTGCGGTATCGAAACTGTTTAGGGAGTTTTAGCACCATTGTAAACATGCAATGTTGTGAATATGCACCATTACTGTCGTTGAATGCGCATTGTGAATGTGTTGTATTGTTATGTGGCTGATTAAACATTTACATTTGGTGCTATTGATGCCGGTTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07970	COPIIcoated_ERV	Endoplasmic reticulum vesicle transporter	Family	Interproscan
PF13850	ERGIC_N	Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012936	Domain	Endoplasmic reticulum vesicle transporter, C-terminal	Interproscan
IPR039542	Domain	Endoplasmic reticulum vesicle transporter, N-terminal	Interproscan
IPR045888	Family	Endoplasmic reticulum vesicle transporter	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10984	ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005783	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006888	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006890	Biological Process	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0030134	Cellular Component	COPII-coated ER to Golgi transport vesicle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24558.1 global RNA-seq network