Gene detail

Detailed information of RPACG24544.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24544.1	GLYCOSYLTRANSFERASE	tig00116229	53111	72459	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24544.1

ATGACAGGGAAGTCTGTCGATAGTGTATTCACAGAATATGCAAAGGTGACAGGAACTCATTTGGTGCAGTTAGAAATACATGTTCTGGGCGACACTTCACAAGACGGCAAAGATGCAGCGACGTGGTTCAACAAAAGAACGCATGTCGAGGAGATCTCAGTTGCTCTTATGCCTGTGATGTTGAGTAGAGTCAACTGCATATGTGAAAGGAAATCTGAGAAACGATCACGTAAAGAGACGAAAACATTTCAAGTGGATGCACCTTCGCTGCGACTGGCATACCGCTTCAAACAACGCAATTCCAGTAATCAGTGTATTCTCATCAACTGCTTCGAAACGAATTTACGCAGTAGACGTCATAGAAGTCTCCAAGTTTTTTCTGAAAAGCTCGTGGTGCATGCCTATCACAGGAAAGGATTCAGACGACTCGAGGCTATTTACACAAACAATGACAAAGCATTGCTTGACTTCAAGGATGATGAGGCCGCGCCATCGACACTGCTAACGCTTCGGTCTAAGTCAACTGCGAGTGTCTACTTCAACAAACGCAGCTCCTCCCCACAACTGCAACAGCTGACCCTCAGAGACATAATCAAGAAAAGTGGACCAAAGTTGTCGAAGTCCAGAAGAAGGCAGACCGTCGAAGATGTGGACTCAGTTGACAGTCTGTGGACCTCGATGGAAGACGAAGTTAACGTCAACGAAGTCACTCCATCCAAGCCGAACCGCGTCCTCAAAGTGTCCGATACATCAGAAGTAAACCTCGTCACAGCGATTGAAGATAGTGGCTTCTGCCAGGAGGAAATGGTCGCAGCGGAATCCAGCAGTGTTGTGACGAGTGGGTCCAGCCAGTGCTCCACCAGTGATCCTCGATCCGGTGTGACTGTGGAGATGTCAGAGGTTAACCCACCCACTCAGTCGGAGAGCAGCAGTGAAGGGACATCACACAGAAAGACGCGTTCTGTGATGCAGTCCATGCAGTACCAAAAGAACAGCACGTCTCCAGGACCTCACATGACGGCACAGTCACGACCGGACATTCACAACTATGGGAACTGTACCAGTGACCGCAGTGACCTCAAGGAGAAGTTTCCGAAAGACGTGTGTTGTATTAAGGAGAAATATCATAAGGACAAGTGTCTCGATGACAAATGTCCTATGTTTTCCAAAGACAAATCTTCTAAAGACAATATTCCAAAGAATAAGTGTTTCAAAGACAGTTGTCCCAAGAACAAATGTCTAGAGGACAAGTATACCAAGGATGAATGTTTGAGGAACAGGTGTCATAACAAGACTCCTCAGGACAAGACTACAAAGGACACGACACAAAAGGACAAAACTCCTAAGGCTCCCCAGGACAATACTTCTAAGGACAAGACTGCAAAGGACACAATACCAAAGGACAAAACTCCTAAGGCTCCCCAGGACAATACTTCTAAGGACAAGACTGCAAAGGACACGATACCAAAGGACAAAACTCCTAAGGCTAACTGTGCCAAGGAACAGCAGACAAACTCAAGAGGTAAACTAATCTCCAGCCAACAAGATTGTTACAACGTCACAACCAGACCCCCAAAGGGTGGAATGAAAGAACAGCGGAAGCTGAGGTTAAAGAAACGAGCGACGCCCACATCTCAAGTGGCATCACCTAACAGCTCAAATGGTGACATCCCAGCGGTGGACAACGGTTCTCCAGCTTGGAAGATGTCACCTCAGGCAGATAGAGACAGAGTCAGAATAAGAACCTCACCAGAGAAGTCTGTTGCTGACAAGTCAAGATGGGTAGAGAAACGCAAGGGTAACTTCAGGGGTCGCAACCTTACATGCAGTGGCGCCATTTCGCCAGGTTCACATAGTGTCTCAAAATCCTGTAACGCAACATCACCTAATGTTAAGCGTAGTGCTGACGTCGTGGTGACAGCACGACGTGCAGGCTTGAAGTGTGCCACGAAGACAACGACATCGATTCGAGTGATGCAACAGCGGAAAAAGGTGAGCAGTAAACTGGAGAAAGCTCTGCAAGTTTTCGAAGCTGACTGTAGTTCCAATACAGCAACAGCACGAAATGGGGAACAGACAGGCTCAAAGGGCCAGAAAACCAGTGAAAAGCTGGCTACACTCCTGAAAGAGTTTGAAGAAGATGCACACCTTAATCCTGCTGTTATCCTCAATCTTGCCACTACAAAGACACCAAAGAGAGCACACAAGCCTGACAGTTCAAATAGTTTTCTCTTTACAGAACGTACCTCACTTGACAAGGACCCATCTCAGGACCTTTCCCAGGCAGGTGGGTCTAAAGTAAACCTGAAAGTCAAGAAACGTAAATCGGACAGCCGTGTACAGCCTAAGCCAAAGCGACTCAAATTATCATCTAGTGACAGTTTTGTTAGCCCACGTAAGGCACCATTGTCAGATGCAAGCAGTGTGTCGCCATTAAAACAATGTGGACAGAAATTGAATGGTGACTGCAGTGCCAAGTGTCAGCCTGTCAGTCCGTCATTGTCACCAGTGCTAGGCTCTCAGAAGACGCGGCGTTTGAACAAATTATCTAGCTGTGACCGTTGTCAATCTGTTAGTCTAAGCGAGTCACGATTGCAGGATACAAAGTCTACATCGCAGTGCTGCCTTAGAGAGAAATTAGGTAGACCTAGATTGTCTGACAGTGACAGTTGTCAATTAAACAGTCCAAGCAAGTCACAGTTGCAAGATACCAAGAAACTGTCATCATGTTTAATCACAAAGGAATTGGGTAGACCTAGATCGTCGGACAGTGAATGCTGTTCTGTCAGTCCACCTGAATCACCATCTCTGCCAAACGTTACAAAAATTAAATTGCCCAACTGTCTGGTAGATACACAACAAACCTCGAATGTTAACAGATCGTGCGAGAAACGGGTCCCAATCGGCAGTTTGGCAAAGAAAATTAAATCGGAAAGCTACAGGATGTCTCCAGAGAGGCGAAAATGTCTCGCTGCTTTGATGAACTCGGATTCCGATTGCGACTCCATTCTGGCGGATGGACATGGTGGTTCAGTGATATCCCAGAGACGCAGTTCTCGTGGAATGGTTAACGAATACTTCCAGCGAGCGTTGCGCTATGAAACGATGACTAAGTTACAGGAGAAAACGCCCAGTAAGGAGGGTGAAGATCTCGAGAATTTTCAATTTGAAGATCTGCTCAGTGATTGTTATATCAGTGATGAGACCCAATCGAAGCCCATCGCAGCTACTGAAATATTGGACAAGGGCCAGAATTGCATGCATACGGAGATTGCTGAAGTCAAGAACGTCTGCGATCTGACAGAGGAACAACTGTTGTATTTGGTGAAGAAAAACACACAATACCTGAAGGACATCTTTGAAGGAAAGGTGCCGTGCCAAAGACATGACTGCTACAAGGAGGGCGGAAAGACTAGAGTTGCTCTCAACTACCAAGTGCGACTGAATCTATTCAGCGAGGAACAGCCTGATATCATTGTCTCTGCGCTAGTCGCCACATTCTGCCATAAGACAGGCTCAAAGTATCTCGACTACGTGCTGAAGGTGTTGTTGCCTGAAGTTCTGGTCAAGATCTACATGGACATACACGGAACATCCTATAACGACACTGAGGAAGCAATGGCCAAAGCGCGGCCCATCGAACAAGATTTCTGA

Transcript

RPACG24544.1

GGTTACTATTACCACGCTTAGTTGGTTCACATTTGCTTTAGCAACAAAACTCATCATTTTTAAACTGATGAAAAGTTGCACCCCGAAAAGGAAATCGGACTATTATCAACAACAGATTGTAGAAAGTAATCAATATGACAGGGAAGTCTGTCGATAGTGTATTCACAGAATATGCAAAGGTGACAGGAACTCATTTGGTGCAGTTAGAAATACATGTTCTGGGCGACACTTCACAAGACGGCAAAGATGCAGCGACGTGGTTCAACAAAAGAACGCATGTCGAGGAGATCTCAGTTGCTCTTATGCCTGTGATGTTGAGTAGAGTCAACTGCATATGTGAAAGGAAATCTGAGAAACGATCACGTAAAGAGACGAAAACATTTCAAGTGGATGCACCTTCGCTGCGACTGGCATACCGCTTCAAACAACGCAATTCCAGTAATCAGTGTATTCTCATCAACTGCTTCGAAACGAATTTACGCAGTAGACGTCATAGAAGTCTCCAAGTTTTTTCTGAAAAGCTCGTGGTGCATGCCTATCACAGGAAAGGATTCAGACGACTCGAGGCTATTTACACAAACAATGACAAAGCATTGCTTGACTTCAAGGATGATGAGGCCGCGCCATCGACACTGCTAACGCTTCGGTCTAAGTCAACTGCGAGTGTCTACTTCAACAAACGCAGCTCCTCCCCACAACTGCAACAGCTGACCCTCAGAGACATAATCAAGAAAAGTGGACCAAAGTTGTCGAAGTCCAGAAGAAGGCAGACCGTCGAAGATGTGGACTCAGTTGACAGTCTGTGGACCTCGATGGAAGACGAAGTTAACGTCAACGAAGTCACTCCATCCAAGCCGAACCGCGTCCTCAAAGTGTCCGATACATCAGAAGTAAACCTCGTCACAGCGATTGAAGATAGTGGCTTCTGCCAGGAGGAAATGGTCGCAGCGGAATCCAGCAGTGTTGTGACGAGTGGGTCCAGCCAGTGCTCCACCAGTGATCCTCGATCCGGTGTGACTGTGGAGATGTCAGAGGTTAACCCACCCACTCAGTCGGAGAGCAGCAGTGAAGGGACATCACACAGAAAGACGCGTTCTGTGATGCAGTCCATGCAGTACCAAAAGAACAGCACGTCTCCAGGACCTCACATGACGGCACAGTCACGACCGGACATTCACAACTATGGGAACTGTACCAGTGACCGCAGTGACCTCAAGGAGAAGTTTCCGAAAGACGTGTGTTGTATTAAGGAGAAATATCATAAGGACAAGTGTCTCGATGACAAATGTCCTATGTTTTCCAAAGACAAATCTTCTAAAGACAATATTCCAAAGAATAAGTGTTTCAAAGACAGTTGTCCCAAGAACAAATGTCTAGAGGACAAGTATACCAAGGATGAATGTTTGAGGAACAGGTGTCATAACAAGACTCCTCAGGACAAGACTACAAAGGACACGACACAAAAGGACAAAACTCCTAAGGCTCCCCAGGACAATACTTCTAAGGACAAGACTGCAAAGGACACAATACCAAAGGACAAAACTCCTAAGGCTCCCCAGGACAATACTTCTAAGGACAAGACTGCAAAGGACACGATACCAAAGGACAAAACTCCTAAGGCTAACTGTGCCAAGGAACAGCAGACAAACTCAAGAGGTAAACTAATCTCCAGCCAACAAGATTGTTACAACGTCACAACCAGACCCCCAAAGGGTGGAATGAAAGAACAGCGGAAGCTGAGGTTAAAGAAACGAGCGACGCCCACATCTCAAGTGGCATCACCTAACAGCTCAAATGGTGACATCCCAGCGGTGGACAACGGTTCTCCAGCTTGGAAGATGTCACCTCAGGCAGATAGAGACAGAGTCAGAATAAGAACCTCACCAGAGAAGTCTGTTGCTGACAAGTCAAGATGGGTAGAGAAACGCAAGGGTAACTTCAGGGGTCGCAACCTTACATGCAGTGGCGCCATTTCGCCAGGTTCACATAGTGTCTCAAAATCCTGTAACGCAACATCACCTAATGTTAAGCGTAGTGCTGACGTCGTGGTGACAGCACGACGTGCAGGCTTGAAGTGTGCCACGAAGACAACGACATCGATTCGAGTGATGCAACAGCGGAAAAAGGTGAGCAGTAAACTGGAGAAAGCTCTGCAAGTTTTCGAAGCTGACTGTAGTTCCAATACAGCAACAGCACGAAATGGGGAACAGACAGGCTCAAAGGGCCAGAAAACCAGTGAAAAGCTGGCTACACTCCTGAAAGAGTTTGAAGAAGATGCACACCTTAATCCTGCTGTTATCCTCAATCTTGCCACTACAAAGACACCAAAGAGAGCACACAAGCCTGACAGTTCAAATAGTTTTCTCTTTACAGAACGTACCTCACTTGACAAGGACCCATCTCAGGACCTTTCCCAGGCAGGTGGGTCTAAAGTAAACCTGAAAGTCAAGAAACGTAAATCGGACAGCCGTGTACAGCCTAAGCCAAAGCGACTCAAATTATCATCTAGTGACAGTTTTGTTAGCCCACGTAAGGCACCATTGTCAGATGCAAGCAGTGTGTCGCCATTAAAACAATGTGGACAGAAATTGAATGGTGACTGCAGTGCCAAGTGTCAGCCTGTCAGTCCGTCATTGTCACCAGTGCTAGGCTCTCAGAAGACGCGGCGTTTGAACAAATTATCTAGCTGTGACCGTTGTCAATCTGTTAGTCTAAGCGAGTCACGATTGCAGGATACAAAGTCTACATCGCAGTGCTGCCTTAGAGAGAAATTAGGTAGACCTAGATTGTCTGACAGTGACAGTTGTCAATTAAACAGTCCAAGCAAGTCACAGTTGCAAGATACCAAGAAACTGTCATCATGTTTAATCACAAAGGAATTGGGTAGACCTAGATCGTCGGACAGTGAATGCTGTTCTGTCAGTCCACCTGAATCACCATCTCTGCCAAACGTTACAAAAATTAAATTGCCCAACTGTCTGGTAGATACACAACAAACCTCGAATGTTAACAGATCGTGCGAGAAACGGGTCCCAATCGGCAGTTTGGCAAAGAAAATTAAATCGGAAAGCTACAGGATGTCTCCAGAGAGGCGAAAATGTCTCGCTGCTTTGATGAACTCGGATTCCGATTGCGACTCCATTCTGGCGGATGGACATGGTGGTTCAGTGATATCCCAGAGACGCAGTTCTCGTGGAATGGTTAACGAATACTTCCAGCGAGCGTTGCGCTATGAAACGATGACTAAGTTACAGGAGAAAACGCCCAGTAAGGAGGGTGAAGATCTCGAGAATTTTCAATTTGAAGATCTGCTCAGTGATTGTTATATCAGTGATGAGACCCAATCGAAGCCCATCGCAGCTACTGAAATATTGGACAAGGGCCAGAATTGCATGCATACGGAGATTGCTGAAGTCAAGAACGTCTGCGATCTGACAGAGGAACAACTGTTGTATTTGGTGAAGAAAAACACACAATACCTGAAGGACATCTTTGAAGGAAAGGTGCCGTGCCAAAGACATGACTGCTACAAGGAGGGCGGAAAGACTAGAGTTGCTCTCAACTACCAAGTGCGACTGAATCTATTCAGCGAGGAACAGCCTGATATCATTGTCTCTGCGCTAGTCGCCACATTCTGCCATAAGACAGGCTCAAAGTATCTCGACTACGTGCTGAAGGTGTTGTTGCCTGAAGTTCTGGTCAAGATCTACATGGACATACACGGAACATCCTATAACGACACTGAGGAAGCAATGGCCAAAGCGCGGCCCATCGAACAAGATTTCTGATCTGCTTGGATGTACTACACGGGATGTCTTACGCAGATGCGGAGGAAACGTGGCTCAAAGGGGGTCCATGCAGAATACAATGGGCTAAGCATGGCCCATAGTGAAGACAAAGACCCATGTGCAGACTTTGAAACAAAACTCTTATACACCGGGTCACATTTGTTGGTCAAGTTCATGTTTTGTGAATCGCCATTCATATATTGCTCATGTTTTCAGTTGACATCAGGTTTTTCCTACATCAATTACATGCATGTGCATATGCACAGTTTGATTTCCCAATGTAATTTTCTGATTGCATTTAATTTTACCCGAAAATACAACCGCATGGTTTGAAACACATTTTATTTCAGGTATGTATGAACTTGGCTGGTAATTGCGTCCATCCGCGTTTCTTTGTCTCTGGTTTCAACTACTATTTCTACTTGATACTATTACGATCAGCAATTAGATCGGTAGACTGTGAACTTACTGGTAGACTTTTACAAATAATCTCAAATATATCGGGGAAAACAGTTTGTATCACACAGCTCTCTGCTAGTGGCATAGACGCACGTGTGTTTTGTTGTGGTTTGTCCTGGTTTTGTTATTGTGATGCAATATTTGCGATTCCAAAAAACGTGATACAGCAGAAGTTGTTTTTAGAACAGTTAGGTTTTATGTTAGATCTGTTTTTGTTATCAGATCTGAAATGGTTGAATATTGACAAATCAGAGATTTCTTGGAAAGATGTACACTGTGTGAAAATCTGCAATGGTTTAGATTATTTAATCAAACTGAGAAAAAGCCGAATTATATTCGCAGGGATGAAAGCATAATTTTTAGCAATGACAAACAGTTTACTACAAATTTCAGAGGTACATTTTAAAATTAATAACATGAAACAGTGTTTCTCGTGTGTGTTTTGGATTGATTGGCGTATGATTTGAAATGTTAACACATTCCTTTGACGCGATCTATTTACAAACTTGTATATGAACAGTTAATGTTCCTTGAGAGTTGACGTGTTACTGTCATTAGACCCATTACACGTTTTTGGTTTACTTGCATGTATCAGATGATTTATATAATTTATGAGCCATTGCTGTAGTGTCATTCTACAAAAGTTACTTTGATATTTAAACAGTAAAGTCTGTTTTCTTTCAGTACTATGATCTATGGATGGCGGTTTTTTAAAGAAATTAAAATAAAAGTTAATGCAGCTATTTGGAGCCACTGTGATGACATCTGAAATGGAAATAGTACAGTTGTTATGTTTGTTAAAAAAATAAAGGAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03901	Glyco_transf_22	Alg9-like mannosyltransferase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005599	Family	GPI mannosyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22760	GLYCOSYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000026	Molecular Function	alpha-1,2-mannosyltransferase activity	Interproscan
GO:0000030	Molecular Function	mannosyltransferase activity	Interproscan
GO:0005789	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0006506	Biological Process	GPI anchor biosynthetic process	Interproscan
GO:0016757	Molecular Function	glycosyltransferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24544.1 global RNA-seq network