Gene detail

Detailed information of RPACG24472.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24472.1	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	tig00116210	750238	766029	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24472.1

Transcript

RPACG24472.1

ATGCAAACCATTAATCCTGCTAGTGTACAACAAGTACAACAGGTGCAACAGGTGCAACAGGTGCAACAGGTTGTACGACACTCACAAGCCCAGCTGCAGACACAGCAGACCCAGTTGCAGACACAGCAGAGCCAACATCAGCAGCAGCAGCAACAACAACAACAACAACATACCACTCCGGTTCAGACAGTGCAGGTGACAAATCATCCAAAGACGTCAACCCAGTCCAACTCACAACCAACTGTCATCCAACCTGCACACAGTGGACAGCAATTTATTGTTACAATTTCCAGTGATCCACCCGAGCAACAGGTGCAGGAAACTGTACAACTTCAACAAGGCTCGTCTCAGCAAGTTGTCTACCAGACGCATCAGTACGTGCATGAAGGATCCTCTGACCCAACGATATACGCCACTCCCAATGGCCAAATGCAGTCATACACAGACTACAGCCAAGCGACGATGTATACACCCGTCCCAGGCACCTACTTCCAAACGCAAGCAACAGATGGCAATCAAGTGATGAGCACCAGTCAGCAGCTGGGCAGCCTCCAGGGTCAACTCGTCTCCCACCAGGGTGGAACATACCTGGTGCAGGGGGGCATGATGGATGGCGAGGGGCACCCCCTGACTCACACGACCAGGGCATCGCCAGCCACTGAGCTCAACTCGTCAGACAGGATGCCTCATTTCGATGTGAAATCATGGCAACGGGAAGTGCAGTGGTTGATAGACAACTACGAGACAGCGGAGGGCGTCAGTCTGCCACGCAGCACCCTCTACAACCACTACCTGCGCCATTGCCAGGAACAGAAGATGGACCCCATGAACCCGGCGTCGTTTGGAAAGTTGATACGTTCAGTCTTCCTTGGATTACGCACCAGGCGGCTTGGTACCAGGGGAAATTCAAAATATCACTATTATGGAATTCGTATAAAAGCTACATCGCCACTGAACCAGTTCACTGACGATCAGACAATGGCATTGCGCCAGACACCAGTCAACCAGGGAAAGAGATTCAAGACATTGAACACATCTGCAGACGGCTTTGACAGCGTACAGAACAGCTCATTTGGGGACAACCAGCAGCAGCACCAGCAGTTCCTCGGTGACGCATCGGGAGCAATCCCGGCATTCAGTCAGATAGAACTGGGAGAAGAGCCTCTTCCAGAAGGAATAACGATGAACCACCTGAAGGTGTTTGAAACCCTGTACAAGGAGCACTGCGAGGCCATTCTTGACATCGTTGTGAACTTACAGTTTTCTCTGATCGAAGCACTGTGGCAGACATTTTGGAGAAATGCACCCACAGACATGCCTCAGTGTGACAGCGATCTGGAGCAGAGGTTGTCAAAGACAGACCTCTTACGAATGTGCAGCTTGGCATGTGTGCAGAAGTATGTGCGCAGTTCTGACTACGCTTTCTACCAGGCTCTCGTTGAAGTCCTTATCCCAGATGTGCTACGGCCTATTCCAAGTTCGTTAACACAAGCAATCCGCAACTTTGCAAAAAGTTTGGAGGGTTGGCTGAAGAACGCAATGAGTGGAGTAACAGACAGCATGGTCAGAACTAAGGTTGGCTCTGTGAGCGCCTTTGCCCAGACGTTGAGACGCTACACATCACTGAATCACCTGGCACAAGCAGCGCGTGCTGTGCTACAGAACACAACTCAGATCAGCCAGATGTTGGCCGACCTGAACAGAGTCGACTTTGCCAATGTTCAGGAGCAGGCTTCATGGGTGTGTCAGTGCAATGACTCAGTTGTACATCAGTTGGAGCAAGACTTCAAGAAGACATTGCAGCAACAGAACTCTCTGGAGCAGTGGGCCGATTGGCTTGAGGGCGTCGTCAATCAGGTGCTGAAGGCTCACGAAGGCAGTGCTGACTTCCCTAAGGCAGCTAGACAGTTTCTGCTCAAGTGGTCTTTCTACAGCTCAATGGTGATTCGAGATCTGACTCTGCGCAGTGCAGCGAGCTTTGGCTCCTTCCACCTGATACGGCTGTTGTATGATGAGTACATGTTCTACCTGGTGGAGCACAAGGTGGCTGGAGCGACTGGCGAGACTCCAGTGGCGGTGATGGGTGAGTTCATCCACCTTGGAGGGCCAAACAATAACAGTGCGAATGAGAAGTTACCAAACGAGTCTGTCAAGACGACGACTGTACAGTTGAAGACCGAGAAAGTCACCCCGAAGACCGTTGTCACAACCATTCCAACAAAGAACACTGTAAGCACGCCGATGACATCAACAGTAGCGCCGCCACGCATCGTCAATATCACACCAGGCATTGTGAACCACACGACAACACTGCAGAGTCACTCTGCCGCCCCGACTATCACTCGAGTTAGTGCCATCAGTAACAGCAACCCGGCAACAGTGACCGTTGTCAACACGGCAGGACCTTCCGCCACTCCCACTAAGACAATTGTAGTAGTCCCCGTATCGGCTGCAGCCATCGGCAGTGGTGATGCACAGCCCACTGCTAAACGACTCAAAACTAACTAGTCACATGTGTCTTCAGACAGCAGAGGTAGCTGCTTACGACACTGCTATAAGTGGCCACAATAGAACTTGTTCGTGCATCCTCCTGGATGCGATTGCTGCTGAGGTGTCGTTTGTTGTGAGGATACGTCAACTTGCCTGTGTTGATGTCGCACCTAATAACTATTTTATACAGGTTTATAAGTTATTTCCTTGAATGGTTTGATGAAATGACTGTTTGCTAGGGAGATAAATGAATTACTTTGCCATATTTGTAAAGATGAAGAAAGAGAACACTGCCAGTGGATGAAATAAATGTTAGTGTATTGGGAAACTGGTTTGCATGGTTATTCTTTTACTGCTGTGCCTTTTAGCATAAATGTTGCTTTATAAATGGCCTCATGTTTATAAATGAATAGCTGATCTGAGGTGAAACGGGCAAGAGATGATTGCGTAGTTGTTTTGATGACCACCTAAAAGTGGAAACAGAAGAATATGTGCCATTCACTCTCGGACTCAAATTGTAGTGCACTGTTTTATCCCATGTCAAATGTATACTTTGTGGTTTTCAAAACGTGAAGAAACAAAAGTTGTTGGATATCATAAATTGTTGCCAGTTGGACAATGTTTTACTAGAATCAAACTGTGAAAACTTACATTGTAAGTAGAGTATGCAAAACAGTTGAATTATTTAGAAGTATTCTATTATTGATTGGCCAAGAGGTTTTGTGTGAATACATTTCTTTACAATTTGCATGCTTTTTCTGACGTGCAGCAAAAAAATATAGTGTGTATTTTCTGCTGCTGGTAGTAAATGTCTTGATAATACAAAAGCAATATTCCCAGCTGGTAATCGGGAGTTGTTTACTGGTGATTACTTGGGTTGTATTAATGAACTTTGCCAGTTCAGACTGTATAAAGCATTCGTGTCTAGCCATGACAATACATTCGAACCACTTTCAACTTGGGTAGTTCAAACTTAGTAAACAAATATACAACATGCCTTGATTGTTTCCACTACTGATTTGTCTAAGTCGTGTCTATTAATAAACAGAAATGTGTCTACCGGGTTGAAAATGTATTTACATGTGAATATGAGTATTTAACATGCATGCAAATATTGAATGCAAACTGGATAATTCCTTATACAGTCTGTGATGTCTTCAAACATGAATTTGGCCTTTGTCGCTGGACATTTTACTGCTTATCAAATTATAGAAATAGTGTATATATTGAACCTTTGTGTTGTTAGTTGTTAGAGTACTAAAGCTTAGTTATCATATTTATTACTGCAATATTGGAAGAAGACAGTATTTTATTAATAGATCCGGCGCATTTTATTTGACAACAATTGTCAGATTTGCTTTGTAAGGTTCTGTTATTGATGAAATAAAGTTCTTTTTTGTATTTGCTTTCTAACTGCCTTTTCAGAGCCGTGTGTGTGTAAAACAGTTTAAATATCCAATGTGTGTTGAGTAAAGAGAACATAGATAATACCAAATACAAATATCTTGATACCAATTCATAGCATGCTATTATTGACATTAATACCAAGCTATTATTGACACTAATGTAGTTGAAAAATAGACTTCGAAATGACTCCAATATATATCAGTAAATGGATTGGAATGCAAGACCGCTTTCAGTTACAGTATCCTCAGTGCGAGTTCAGTAGGGTTGAACTTTGTAGGAGCTGTATGTTTGACAACACGATCAATTAAATGGATATTAATCAACATTTACACGCTTGAATGCTAGCTTCAACACTTGAATGCAGTCTTTGATGCATGTAAATGTCCTTTTCAAATATTATGTTTAATTACAAATGTTTTGGTATATGTAGATGTTATTTATGATGAATAAAGCAATTATATAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07700	HNOB	Haem-NO-binding	Domain	Interproscan
PF07701	HNOBA	Heme NO binding associated	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011644	Domain	Heme NO-binding	Interproscan
IPR011645	Domain	Haem NO binding associated	Interproscan
IPR024096	Homologous_superfamily	NO signalling/Golgi transport ligand-binding domain superfamily	Interproscan
IPR038158	Homologous_superfamily	H-NOX domain superfamily	Interproscan
IPR042463	Homologous_superfamily	Haem NO binding associated domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45655	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004383	Molecular Function	guanylate cyclase activity	Interproscan
GO:0006182	Biological Process	cGMP biosynthetic process	Interproscan
GO:0008074	Cellular Component	guanylate cyclase complex, soluble	Interproscan
GO:0019934	Biological Process	cGMP-mediated signaling	Interproscan
GO:0020037	Molecular Function	heme binding	Interproscan
GO:0038060	Biological Process	nitric oxide-cGMP-mediated signaling	Interproscan
GO:0070482	Biological Process	response to oxygen levels	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24472.1 global RNA-seq network