Gene detail

Detailed information of RPACG24471.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24471.1	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	tig00116210	688590	719566	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24471.1

GGACAAGCGTGTTGTAAACAGTTGGAAATTCAAGTAAAGTTTTGGAAAGATTTCCATGGACTACACTACGGGACTATACTCTTAAAGTTGCCGGGCGCCATGAGCTGGCTCCTCTGTCGTTGGTGTCTGTGTCACCAGAACCAGGAGGACACTGACTGTGTCAAGGTGCTGGACTACACCCACTGCAGCCTTGACACTATCCCGAGCGATGTCTTCGAATACGAGCGCACCCTGGAGGAACTCTACATCAGTTACAACCAGATCACACAGTTGCCAAAGGTTCTGTTCTGTTGTCACGGCTTACGCAAGTTCAAAGCGTGTGACAATGAGATCGTGTCAATACCAGAAGCCATCAGTCAGCTGGTCAACTTGGAGGAGATGGACATCAGCAACAATGCGATTATCAATCTGCCTGATACGATCCAGGTCTGTCGGAAGCTGTCGGTCCTGGAACTCAGCATCAACCCACTGGGAAGGTTGCCTGAATCGCTCACCCTTCTGTGTAACATGAGGGAGTTGTATCTCAATGACACCCTCCTAGATACACTGCCTAGCTCTCTAGGAAGGATGAATCTACTGGTGGTGCTGGAACTGAGGGAGAACCACCTGAAAGCTCTGCCGAAGTCCACGGAGCGTCTCACGCATCTCGAGCGGCTCGACCTCGGCAGCAACGAATTTACCGAAATGCCTGGGGCAGTGTGCAAGCTGCAGTGTCTGCAGGAACTGTGGATAGACCAGAACTTCATCGAGACGCTTCCCCCGGAAATCTGTGACCTTTCTCAGCTGACCTTCTTGGACGCGTCAAAGAACCACATCCAGTGGCTGCCCATCGAGGTCAACAAATTGGTGTCGCTGACCAACCTACATCTCACCACAAATCGTCTCACGCAGCTGCCCGAGAACATCGGACGACTGACCGGACTGATCACCCTGCAGCTACAAGAGAACAAACTCACCTCACTCCCCATGTCACTGGGCAGCATGTCATCATTGGTGGAGTTACATGTCAGTTCAAACGAACTTACGAAACTGCCCCCTAGTATCGGACTTCTGCGACACCTACGAGTTCTCTATTGCGACGACAATTACATTATGGAACTCCCTTCAGAGATCGGCAGCTGCAGTGCCATTACCGTGTTGACGCTCCAGGGCAACAACCTGATGTACATTCCAGAAGAGGTTGGCCGAATCTCTCATTTGCGGGTGCTCAACCTGAGTGACAACCAGCTGCAGCACCTGCCCTACAGTCTGACGAACCTGAAGGAGTTGAAGGCCCTCTGGCTGTCCAACAACCAGACGAAGCCACTCGTTCGTCTGCAGGTGGAGAAGAATACGGAGACAGGACGGAAGGTGCTCACTTGCTACATGCTGCCGCAGAAGACTGTCGAAATCAGCCTGCATGACTATTGTTCTGAAGAGTGCGTGTTCCCTCATGGCGTGGATCATAACATGAAACGCGTTATACAGTTTCACGAGGAGAACTCGTTCAACCGCAATACGGTCTTGGCGATATCGCCATTGGCCTATGACTACATGTATCGTGAGTTATCAGCGGGACCAAACAGGAAGTGGGATGTGTTTGCGAAACGCGAATCTGCAGCATCAATTTTGAACACAGGAAGCAGCAGCTCCCAGATCATGTTCAATGACAAACGCCATCATCTACTACGGGCAGACAAGGTGAAATCGATAAAAGATAAGGTGCGCATGTCAGTAGAAAGCTCGCGTTCGAATAGCATATCAGGATCAAGCAACCAGGTCTCCCTGAAGTCTCCACAATGTAATCACAAGTCCGACAGCTCCAATGAAGACTTGAAGCCGAAACCTTTGGTGCCAGGGCTGAAGTCGGCCATGAAGTTTCGAAAGGAAGATGACGAAAACAGGTCAAATGGGTTTGACGACAGTAACGGGTTTGTGCAACTCGGCGCACGGAATACAAACACAAACACAAACTCTGTGACGACACGCATGACGTACGCGGAATTCATGCAGGGTCTTGGTTCATCTGCACCCAGTCGACAGGATGCTCGCGAGATGTCGCACTGGCCTCGGGGACATCCTCGCAGCGGATACAGACGAACACATCGCATTAGCCGAGGCTATGAATCAGACTCAGGGTACCAAAATGACACTGGTTACCGTAGTGACACCGGGTACCGCAGCGACACAGGTTGCTACCGTGGCCACCGTTCTGGTTACCGTAGCGACCAGGAGCACCAGTACGGTCGGCAGCGTGCCCTTATGGCGCCACATGGCCGTGGCTGTATGAGTGAGTGTGATTTGAGGACAGATTGGCGGGGGAACTTTGATCCTGCTGGTGGCCGGTTTCGTGAAAATTGCCTGAATGTTAGATCGAGTAGCTGCAATATGCAGGCGCCTCCTGGTGTTTCAAAGTCAATGTCCACATACAGCAATATCCCGATGGCGAAGCGTACAACAATTCGAAATGACGAGCTGTATGAACAGCACCCAATGGCAGCAGGGGCCGTTGCCTTGCGGGAATCAAGTACTTATAATGGTAGTCATGACAATCAACATTCTGACATAGTCACCACAGGATATAATGGTCATGCATCACATGACCATAACGCCAGTGTGACATCATATCACCAAGACAGGTCACTAAATGATAGCTTACGAGTCGGTGGTTTCCATAGCAATCAGGGAGTGGGTAACCACCAGCTCAGTGCGAGCGGTTGTGACCACCAGGGTGAAGTTATGGCGACGACATGTCACATGACAGATGAGTACAAGGTGAGCCAGCTGGTGGCTGACAGGGCGGGGTCAGTCGGAGCACTGGAGTGCAGTCAGCCGTCTCCGGAGCATTGGGGTGGTCACCGCTTGGACAGAGTGGGGGGGTTCAACCCCAGTCACAGCGTCACGCAAACCATCACGGAGGAGCAGGGCGATGATGACGATGGCGTTGATGACGAGTGGCGGTCACAGCTGTACGCAGCATCTGTGAGACTACAGAAGAGTCCAGTGATGGACACGCCTAGACAACCTCTCATGGTTCCAGAGCCTCTACTGTCCCATGAACACGTTGCGTCAACCCCCCACCAGTCCACCCCTGCACTTGCTCCTCCCTACAGACCTACCCCTCCCTACTGTCCACCCAGTGACAGACGCCTCCAGTTCCCTCAGCACGCAACACCAGATGGCACCACTGAGCAACGAACGACATGGTCCATGCCGCCTCGACCCAGCACCCTGTTGTTACAGACGACGCGGCCGTCAGCGAGTCGAAGGCTGTACAACAGCCTCGAAAATGCAACCACCAGTCGCAGTATAGGGGGCGATGCATCACGGTCGGACGTCATGTTCTGTACGGCGACCAATGTCGTGCCAGACAGACAGTATAACGGGTCGTGTGCAAGTCAGTTGGCACAGGTGCTGCCCTTCAGTGGCAGTCCAGTGCGGTTGACGCAGTATGAGAAGGACGTAGCCATGTTCAAGACGGAGCCTGTGTCTCAGGTGTCCAGCTCGACGGACAGCGGCTATGGGCATGGACACTGTTTCAACCGGACGTCCATGACCGACGGCAGATACTCAGGGTCATCACCCATCATGAATTCACCCTACCCCAGTTCCTCTCAAACCAATACCCCCTACCAGTCCCCTCGCCCCCTTGAACTGCCCTCAGCAAGTCCCAGCGGACACCACCAGGTTGCGCCACTCAATGACCTGTCCAGTCAGACACAAGTGCTGCGGGTGACAATCACAAAGAATCCTGGACTGGGGTTTAGTATCGCCGGTGGAAACGAGGGCCAGGGCAACCCCTACAGGCCTGGCGACAACGGGATATTTGTGACGAAGGTTTTGGAAGAAGGGCCAGCATCAGCAGCTCTGACATCCGGGGACAAGTTACTGCAGGTGAATGGGATAGACTTCAGGTCAATCAGTCACTCGGAAGCCGTCATGATACTTCGCAACAGTGCCCAACAGGTGGCGTTGCTGATCGAGAGGTTATAG

Transcript

RPACG24471.1

CGGACAAGCGTGTTGTAAACAGTTGGAAATTCAAGTAAAGTTTTGGAAAGATTTCCATGGACTACACTACGGGACTATACTCTTAAAGTTGCCGGGCGCCATGAGCTGGCTCCTCTGTCGTTGGTGTCTGTGTCACCAGAACCAGGAGGACACTGACTGTGTCAAGGTGCTGGACTACACCCACTGCAGCCTTGACACTATCCCGAGCGATGTCTTCGAATACGAGCGCACCCTGGAGGAACTCTACATCAGTTACAACCAGATCACACAGTTGCCAAAGGTTCTGTTCTGTTGTCACGGCTTACGCAAGTTCAAAGCGTGTGACAATGAGATCGTGTCAATACCAGAAGCCATCAGTCAGCTGGTCAACTTGGAGGAGATGGACATCAGCAACAATGCGATTATCAATCTGCCTGATACGATCCAGGTCTGTCGGAAGCTGTCGGTCCTGGAACTCAGCATCAACCCACTGGGAAGGTTGCCTGAATCGCTCACCCTTCTGTGTAACATGAGGGAGTTGTATCTCAATGACACCCTCCTAGATACACTGCCTAGCTCTCTAGGAAGGATGAATCTACTGGTGGTGCTGGAACTGAGGGAGAACCACCTGAAAGCTCTGCCGAAGTCCACGGAGCGTCTCACGCATCTCGAGCGGCTCGACCTCGGCAGCAACGAATTTACCGAAATGCCTGGGGCAGTGTGCAAGCTGCAGTGTCTGCAGGAACTGTGGATAGACCAGAACTTCATCGAGACGCTTCCCCCGGAAATCTGTGACCTTTCTCAGCTGACCTTCTTGGACGCGTCAAAGAACCACATCCAGTGGCTGCCCATCGAGGTCAACAAATTGGTGTCGCTGACCAACCTACATCTCACCACAAATCGTCTCACGCAGCTGCCCGAGAACATCGGACGACTGACCGGACTGATCACCCTGCAGCTACAAGAGAACAAACTCACCTCACTCCCCATGTCACTGGGCAGCATGTCATCATTGGTGGAGTTACATGTCAGTTCAAACGAACTTACGAAACTGCCCCCTAGTATCGGACTTCTGCGACACCTACGAGTTCTCTATTGCGACGACAATTACATTATGGAACTCCCTTCAGAGATCGGCAGCTGCAGTGCCATTACCGTGTTGACGCTCCAGGGCAACAACCTGATGTACATTCCAGAAGAGGTTGGCCGAATCTCTCATTTGCGGGTGCTCAACCTGAGTGACAACCAGCTGCAGCACCTGCCCTACAGTCTGACGAACCTGAAGGAGTTGAAGGCCCTCTGGCTGTCCAACAACCAGACGAAGCCACTCGTTCGTCTGCAGGTGGAGAAGAATACGGAGACAGGACGGAAGGTGCTCACTTGCTACATGCTGCCGCAGAAGACTGTCGAAATCAGCCTGCATGACTATTGTTCTGAAGAGTGCGTGTTCCCTCATGGCGTGGATCATAACATGAAACGCGTTATACAGTTTCACGAGGAGAACTCGTTCAACCGCAATACGGTCTTGGCGATATCGCCATTGGCCTATGACTACATGTATCGTGAGTTATCAGCGGGACCAAACAGGAAGTGGGATGTGTTTGCGAAACGCGAATCTGCAGCATCAATTTTGAACACAGGAAGCAGCAGCTCCCAGATCATGTTCAATGACAAACGCCATCATCTACTACGGGCAGACAAGGTGAAATCGATAAAAGATAAGGTGCGCATGTCAGTAGAAAGCTCGCGTTCGAATAGCATATCAGGATCAAGCAACCAGGTCTCCCTGAAGTCTCCACAATGTAATCACAAGTCCGACAGCTCCAATGAAGACTTGAAGCCGAAACCTTTGGTGCCAGGGCTGAAGTCGGCCATGAAGTTTCGAAAGGAAGATGACGAAAACAGGTCAAATGGGTTTGACGACAGTAACGGGTTTGTGCAACTCGGCGCACGGAATACAAACACAAACACAAACTCTGTGACGACACGCATGACGTACGCGGAATTCATGCAGGGTCTTGGTTCATCTGCACCCAGTCGACAGGATGCTCGCGAGATGTCGCACTGGCCTCGGGGACATCCTCGCAGCGGATACAGACGAACACATCGCATTAGCCGAGGCTATGAATCAGACTCAGGGTACCAAAATGACACTGGTTACCGTAGTGACACCGGGTACCGCAGCGACACAGGTTGCTACCGTGGCCACCGTTCTGGTTACCGTAGCGACCAGGAGCACCAGTACGGTCGGCAGCGTGCCCTTATGGCGCCACATGGCCGTGGCTGTATGAGTGAGTGTGATTTGAGGACAGATTGGCGGGGGAACTTTGATCCTGCTGGTGGCCGGTTTCGTGAAAATTGCCTGAATGTTAGATCGAGTAGCTGCAATATGCAGGCGCCTCCTGGTGTTTCAAAGTCAATGTCCACATACAGCAATATCCCGATGGCGAAGCGTACAACAATTCGAAATGACGAGCTGTATGAACAGCACCCAATGGCAGCAGGGGCCGTTGCCTTGCGGGAATCAAGTACTTATAATGGTAGTCATGACAATCAACATTCTGACATAGTCACCACAGGATATAATGGTCATGCATCACATGACCATAACGCCAGTGTGACATCATATCACCAAGACAGGTCACTAAATGATAGCTTACGAGTCGGTGGTTTCCATAGCAATCAGGGAGTGGGTAACCACCAGCTCAGTGCGAGCGGTTGTGACCACCAGGGTGAAGTTATGGCGACGACATGTCACATGACAGATGAGTACAAGGTGAGCCAGCTGGTGGCTGACAGGGCGGGGTCAGTCGGAGCACTGGAGTGCAGTCAGCCGTCTCCGGAGCATTGGGGTGGTCACCGCTTGGACAGAGTGGGGGGGTTCAACCCCAGTCACAGCGTCACGCAAACCATCACGGAGGAGCAGGGCGATGATGACGATGGCGTTGATGACGAGTGGCGGTCACAGCTGTACGCAGCATCTGTGAGACTACAGAAGAGTCCAGTGATGGACACGCCTAGACAACCTCTCATGGTTCCAGAGCCTCTACTGTCCCATGAACACGTTGCGTCAACCCCCCACCAGTCCACCCCTGCACTTGCTCCTCCCTACAGACCTACCCCTCCCTACTGTCCACCCAGTGACAGACGCCTCCAGTTCCCTCAGCACGCAACACCAGATGGCACCACTGAGCAACGAACGACATGGTCCATGCCGCCTCGACCCAGCACCCTGTTGTTACAGACGACGCGGCCGTCAGCGAGTCGAAGGCTGTACAACAGCCTCGAAAATGCAACCACCAGTCGCAGTATAGGGGGCGATGCATCACGGTCGGACGTCATGTTCTGTACGGCGACCAATGTCGTGCCAGACAGACAGTATAACGGGTCGTGTGCAAGTCAGTTGGCACAGGTGCTGCCCTTCAGTGGCAGTCCAGTGCGGTTGACGCAGTATGAGAAGGACGTAGCCATGTTCAAGACGGAGCCTGTGTCTCAGGTGTCCAGCTCGACGGACAGCGGCTATGGGCATGGACACTGTTTCAACCGGACGTCCATGACCGACGGCAGATACTCAGGGTCATCACCCATCATGAATTCACCCTACCCCAGTTCCTCTCAAACCAATACCCCCTACCAGTCCCCTCGCCCCCTTGAACTGCCCTCAGCAAGTCCCAGCGGACACCACCAGGTTGCGCCACTCAATGACCTGTCCAGTCAGACACAAGTGCTGCGGGTGACAATCACAAAGAATCCTGGACTGGGGTTTAGTATCGCCGGTGGAAACGAGGGCCAGGGCAACCCCTACAGGCCTGGCGACAACGGGATATTTGTGACGAAGGTTTTGGAAGAAGGGCCAGCATCAGCAGCTCTGACATCCGGGGACAAGTTACTGCAGGTGAATGGGATAGACTTCAGGTCAATCAGTCACTCGGAAGCCGTCATGATACTTCGCAACAGTGCCCAACAGGTGGCGTTGCTGATCGAGAGGTTATAGATCTATGCAATAGGTGGCAGAACTGTTAAGTTAATTCTTGGTTCAGCCTCTGTTGGTGACGGCGCTGCTTGATGGTTGACGTAAGAGGAGGCTATGAGAACACGCAAGAGGAGGCTATGAGAACACGCAAGAGGAGGCTATGAGAACACGCAAGAGGAGGCTATGAGAACACGCAAGAGGAGGCTATGAGAACACGCAAGAGGAGGCTATGAGAACACGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00211	Guanylate_cyc	Adenylate and Guanylate cyclase catalytic domain	Domain	Interproscan
PF07701	HNOBA	Heme NO binding associated	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001054	Domain	Adenylyl cyclase class-3/4/guanylyl cyclase	Interproscan
IPR011645	Domain	Haem NO binding associated	Interproscan
IPR029787	Homologous_superfamily	Nucleotide cyclase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45655	GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004383	Molecular Function	guanylate cyclase activity	Interproscan
GO:0006182	Biological Process	cGMP biosynthetic process	Interproscan
GO:0008074	Cellular Component	guanylate cyclase complex, soluble	Interproscan
GO:0009190	Biological Process	cyclic nucleotide biosynthetic process	Interproscan
GO:0019934	Biological Process	cGMP-mediated signaling	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:0038060	Biological Process	nitric oxide-cGMP-mediated signaling	Interproscan
GO:0070482	Biological Process	response to oxygen levels	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24471.1 global RNA-seq network