Gene detail

Detailed information of RPACG24385.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24385.1	LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE	tig00116190	1988836	2001802	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG24385.1

ATGGGTGTAGTGAGTGAACTGGGTGGAGTGACCGGACCGAGTAGAGTGACCAAACGGGGTGAAGTGACCGAACTGGGTGGAGTGACTGAACCGGGTAGAATGACCAATTTGGTTGAAGTGACCGAACCGGGTGGAAAAGCCAGACCGGCTGGAGTGACTTACCTGCGTGGAGTGACCAAACTGGGTGGAGTGACTGAACCGGGTGGAGAGGCAGGACAGGGTGGATTGACCGGACCGGGTAGAGCGACTGAACCGGGTGGAAAAGCCGGACCGGGTGGAGTGACTGAACAGGATGAAGTGACCAAACTGGGTGGAGTGACCGAACCGGATGGACTGACCAAACTACATGGAGTGACCAAACTGCGTGGAGTGACCAAAAAAGCGTGGAATGACCAAACCAGCGGATCATTGCGTGGTCACGTGAACACAAGATGGCGGCGTTCATCTGAAATGTTATGAACGTGGGAAAGAAAGCCTTGTAAACACTTTATCTAACGCACAAAACATGGCCTCTGCATCGATAAACGGCGGAGAAGTTATTGCACCGAAGCTTATGACAGATGCAACACGATTGTTGTGGGGTTCTGATATAAAGCATGACGTATTCAGACGTTGGACTCAAGGGTTTGTGTTCAGTGAGGATGAGCCGACTGCTCTCCTTCAGCTTCAGGGTGGTCCATGCGCCGTCATCGTTCCTGTTCAGGCCTTTCTACTAAAGAATCTCCTCTTTCTTGACACTCCTGCAGACAAATGGCGGCACGTCTCAGAGAAACAACAGCAGATGTTGTTACGTCGGGCACTGGAGGACATCCTGCATGCCCTCTCATGCTCCGACACCTTCATGCTTGTCTCCCACCACTCTGACAGCTTCAACGGCGGAGATGATGGCAATGATGTCAACGTGGATGATGACACTGGTGACGACACAAGTAGCCCCAAGAAACAGTGCTTCAGTCACGAACAGTTCCACCTTGGTCTCAGATGTCACCAGTGTAACTCAAAGGATGAATTGTCGAACCAGCTGCAGTCTCTGTTGGATATGTACCTCGGCCAGTATGGCATTCTTCTCCTTCTCTACTCCATTGTACTCACCAAGGGTGTCGAACATATCAAGAATGAGGTTGAGGATCCAAGTGAACCCCTCATTGACGGTCTTCATGGACACGGCAGTCAAAGTTTAATCAACCTCCTCATCACTGGTACAGCTGTGTCGAATGTTTGGGACAATGACAAGTACATATCAGGACTCAAGTTACAGGGCGTGTCTGGACAGGCCCAGGTGGGCTTCCTTACCCTGCTAGAACACATGCGTTACTGTGAGGTTGGTTGGTATCTCAAGAACCCTGCCTACCCAATATGGGTGTTGGGCAGTGAGACACATCTTACTGTTATGTTCTCTCAGGAGCAGAATCTTGTGATGTCGGAGACTCCTGAAGCAGCCGCCAGGAGGCTCTTCAACACGTACGACACTGAAGGAAGTGGATTCATTGCTGGTGACCTGCTGGGAGATCTCATGGCATCACTCAATCTAGTCTCCGATGAAGATTATGTGAAGATCATGCGAGAGAAGATGGACCCAGAAGAACTAGGGATCATCACTCTGAATGGGTTCATGGACGAGTTCTTTCCTAGCGAAGCTCAGTCGGAGGCCATCCAAAGATTCACCATCTTCCACTACAATGGACTGCCTAGTTCCGGGCCAGGCCACAAGGTGATGTTTGTAGAGGGCACTGCAGTTATTATGGAGATGCCGGAACTACAGATCATTACTGATAGCTCGCCCATCAAGATGTGTCTGCTCACAAAGTGGCCCACAATTGAACTGAAATGGAAGGATGATTTCATTCCGTCGTTGAATTGATCGTCGATATCACACCATTGGTCATATCCAAAAAACCAGTTGGTAACACGTGCATAGATTAATGTATGTTATATATGTGTGCGTAACTTTTGTACATAGGTAGGTATGACTGTATATATATATATATATATATATACATGTCAAATGTACCATTATGTCAATATTAAAATCCATCACTTTCATCTATGTGTGCCTATATACAACTATGTGCATTGTATGTCATAGAGCTGTATATGTACGTATAAATATATATAAAGAATGTTTATGTATAATATATATGTATATTATATACATAAATATTACTGCAAGATCAGCTCTGTATTTATGGTCTCCAATTTCCTGTGAGCTGTGTAGAAGTTTATTATGAATGGACCTTCAGTATACATATGTAAAGCTACACATATATATGTATATATACATATATATATACAATTGCTACAATGATATTTTGCAGTATCACGCATGTCGCAAGTTGTGTTACATTACTAGGTCAAATAACTACTGTCATTTAATGTGAATGCTATTGGTGATACTTGTTCCACATTTCAGACCTAGCATCCTGTAAAGTCAGACCAGGCCCTTTGTTGATGCACTTCATGTATTGGGTAAATTTACTTGAGAATGTAGTGTAAATTATCAATAACTGAAATACGAATCAACTAAATGAGGGCTTCTTTACATGTGGGGAATAGCATGCAATTTATGAAGTAGCATTTTATGAAGTAGCATTTATGAAGTAGATAGACAATTAACAAATGGGTAAAGCTGTTGAGTGTGGTAGGGAACTAATGAGGTTATAAACTTCAATTTTTCTCAATTTACATTGCGATTTGTTTATGCTTCAAGCAAGGAACAACATTTTGTAACTATGAAATAAGGTCAGTAAATTTGTACACAGAGATGTCACAAAAAACTTATGTTCAGCATTATTTAACATTTTTGTCCAGTGTTATGTTATGTTAATAGTTGCACAGTTAAGATTTACGTAATTAACTATTCTTTACCTTGACATTTCTATTTAATGGTTAACATGTTTAGCATTTCTCCATGGTTGTGTTAAGGGATTTGCTAGTGCCCAATATGTGTGTGTTGATACATTTTCTAAGTTTATGCCAAGATGTGTTGCAGTTGTTTGTGTTCATTTTAATGTTTGTCATTAACTGTTCATATACTTGCATTGAATACCATCTTCATTGAATATCATCTTGATATTTATTGATAAAACACAGTTAAAAGGAATGTGGATACCATTATTAAGTGTTGCATGAGTTGAGTTAGTTACTAAGTAATTAATTGCATATGAATTGCTTTAAAAGTTATTTGCTTGCATGAGCAGGATGTACATTGAAAAGAATGAATACAAAACGTTAACAGAAACAGTTCATGTACCACGAGGCTATTCCATTATCATTGCTCCTGTTGCAATACTTGTACAAAAATGTATATATGTATGTGTTTATACTATTTGTTTCATATGTACCTAAGGCTATTTATTAAACTTGAAAATGCATATTTATAACTTATTTGCTTGTATGTATGCTGAATAAAGTTATGTGAAATGTAACAGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01451	LMWPc	Low molecular weight phosphotyrosine protein phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002115	Family	Protein-tyrosine phosphatase, low molecular weight, mammalian	Interproscan
IPR017867	Family	Protein-tyrosine phosphatase, low molecular weight	Interproscan
IPR023485	Domain	Phosphotyrosine protein phosphatase I	Interproscan
IPR036196	Homologous_superfamily	Phosphotyrosine protein phosphatase I superfamily	Interproscan
IPR050438	Family	Low Molecular Weight Phosphotyrosine Protein Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11717	LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003993	Molecular Function	acid phosphatase activity	Interproscan
GO:0004725	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0004726	Molecular Function	non-membrane spanning protein tyrosine phosphatase activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006470	Biological Process	protein dephosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24385.1 global RNA-seq network