Gene detail

Detailed information of RPACG24383.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24383.1	PIKACHURIN-LIKE PROTEIN	tig00116190	1969966	1979810	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG24383.1

MATGVVASNGCWAWLTVALTLMILAPFPTTGIYLQGTETSYARFPKWDACTNATFSFEFRTTQSEGLLMYADDGGKFDFFQMMHTGGRTRLILNIVNGRDGRVQIDVGRSVNDGHWHRVEIRRHRMETTLLVDGVSDSRSSFGSDFNFGNTEGNSEMFIGGLPSEFHENIHQLALPSALYKTRFRGSIRNVIYGNCTCQRSRGQMIEGVGVTQRPREACDLRDPCRRGCLCVSTDTEPSCDCTDLKCVSDVVTHYSLPMDLLMGTTLLNPSGLDASAFGSPDMIRGVVGQAIRLDGRNSYVRVSGPGHRQECFGDLDKCPSGYTLAFWVNFEKPSDREVVYLSNGGHSLQSHGVAMLYDKGNMEFRFRKKNGKEWRVKHDNVLPGRWYHVSVTWSETDGLSFYLNGELVNSDSKAMMRSPRDVNTDENNEFMIGRPNDGVHIRDSIMLVDEFNFWSEYMTAKKMRNLGAIYGYDMPMESMQRSRFTDTKLTTRLHGNPVLAPGKIGSGLLLDGRGEYVDGGDLGGTCLGNLSRCQYGFTFGTWIIFNELLDNMYYFSSGSPNGVQLYHRSGRLYAEAQEGSSNWRASWSGVQTGKWYFVELSWSPSDGLHMFVDLDEVAHAESHSTRRPGGDLSGRLMLGRANSDMSRRRYGAAIFDEMEVWNSDRERLVRLGFINRGKPSSHIFHMDEIDRKGLRHRDASYNVRVFGDARIVPGKIAGGLRLDGNTQYVDADYHAGDCMGNLDLCRQGALASLWVKPALISEKMQLISTGVNGLAVWYAGGKIHASAKTSTREWHASTDHFRPTQWEYLEFAWDPKSGLQIYVNNQKVANSGAPKVRSRVNLGYIRQPEMDRFYLGRGDGSDNDVRYANVTMDEMEYWHLNRDDLIAFDYILRGKPDIYLLDMDEVRNNRLTEPKNLDITTHGRPKLVPGKRNSAIELDGNGQYLDLGQHPDTCLGNLTQCNHGTTGSMWANFKKFNQNTYYYTNGNGVAVFYKDDDLHYTFTSGDQRWEVAVPNLVPNRWYFLEYTWHPEKGLRVYVNNRLQGTDSRPVKVARTSDGRNNHVYVGRANRDDINGRNFRFPEAVLDDVETWYADRDYLVAFGYLVRDNITHLLMPFERDRNNIIVYPEMTVRLNQGAQVVRGKVGNGVSVNGDRQFLSLGEHGNDCFGNLEMCNNGLTMAFFLRLQRLIESGYIMSAGPYSIYSKDGRVHFKYGTATKTWETSTDQITPGQWQKVMVSWDETKGLQVFVDGTLVTSTTSYRRHAPQPIRDKNVYIGRPNSVTPGRYGDFTIDELEVWYANVDHLKAFDLIDKGITHVWFDMNRINGNRLPHDTWTIYVHGRPTTQPGIDGNAIYLNGRNQYIDFGRNVFCDGDPESSCSSGFTLSFEIQPQELKEDTYFVSSAPVDVYYRNGRLTTDVRTPTKKWSASTNRLDPDAWYKVDVSWHPKDGLKLYLNGVKVDERISWTVNRNYNKNDNFYFGRANTDMVDENYAHTLVDNVELWYARRSELVDRGLVPAHFSPPPTTTRRPRYTYPPRTTTTRRIIYERTTERPRVMPPFPPLVDNQRMVVYDGRSWVLYDYSNLSQRYLRGNKERFHIKFKSDKPDGLLWYSGTDERNMHLSLEDAALILVVEYTDGRNKRKDRFRLRPGVGRLDDNRWHNVIINRDGRKVTMTVDGEEHDYPHQLDPRVRLVNKGHVYLGGSNNTYELTGRTTHTDLRGSVEVAKITGDGFPTDIDLVNQYLTRPRPFYIHEGGDVRTRIIDRTASQPRPVTFIKPESHVRLRKLNFGQNGQFSLRFKTIEPNGLLLFNGSPRGSGDFIALEMFDGIVYFVVNFGDGVHRYPLSAGRADDGRAHHVQVKRSRDRLTLSLDDVSMAHRMPRGDNQLNLATFLYVGGVDNPAALPWYLWTRSRTAKNFFVGCMWDLRVNPDDENDIVDLPAFLKSQSVEGMEEGCQSMTEDCAVSPCVNGMCHDRATGYVCDCSATPYTSTRCNTPAKKVAFNGRDSAHVTFNPMLNTHTNDISLRFKTVRPDGLLFSTSNRFQHDFLRVSLEGGKGKLETYIAGEEKIHYFCDGLSDDKWHTMYINRRADYIEAWVDDCSHVIGNLPGDGYTLDIHDIRVASLGSDTDFDKNFVGHMQNFMLDKYNFFELLGDDKPGSGLKVTTTVGKFDVSEHETIIPVNTVTFRLRANAYVTLPPLSATGSLDFKFMFKTKEKEGLLFYNDGRESDFLALELVNGYVHLALNDGSGPRLIQLSSTKQLNDDEWHLVSVKQTGPHYFEARVDNEPPSDINIRRSDNRLDLVGELYVGGMPRHMYDSLPTLVSSRNSFAGCLATIRFNGKLYNIFTDTITTNKFVTSGCTGASKYCDDNTCSRYGVCNEGFDTFICDCNMTSFVGRICTEEAEGYRFGRKTEKGIVIYNYDEPIDTSIDRLAFGFMTWKANGTIFRADSAISADYIEGKLENGYLVMLYDIGNGERRLVEKGRKFDDGQYHYVSFVRTGANATMRVDDFPRKHYKQPGTAVRLFNELAVVKVGGKTNLHDKIYDYFDGIIAGVYFNGERIIDRGIVQDVRVVNKGDVTLATHRFNLPPPVVVAPTKPPVLVAPTRIVAVEDPNLGKTGGKVPPGEGGGEVIDTGGTGGGVGTGDGAGTGGGLTGGDGGPSYQAVVGAGGPSGGSGEGARAAAIAGAFLGILAAASGIMWAGYKLKPGLLGGGGGGGGGGAMSISSPSAGSYQLVPTGNSASASGGGAGGGAAAAKGASAYSNVMVTRMDGMNGATTTGLGLGGAGNRMSTMGTQTAGASAGGGGASANFVEYFSSMSAMSAGGGAGSGIANYIGGVGRITRAAQTDLPYYGGTLATGYLTEAMAMNTGASGGMLSSTTTSYYQQDAAAAAAAARGGYGTMDNQTIVVDELPPPTLTRGMNAYDSQTMAAGGSYIAPPPAPVPSGYNTYAGGTETMYSFNESQGYGSAGGSVSSAQNAASLRMQNMSPVMFDSSTASYTMQNVALNNAAYNQRVSMHGGTPVGLMAAEEIRVDCVLLSADSRNVITSSIYGPPQVWDMRTGELTHIMAGENLSSTDLHLACNDTLLVGQVAEMTQIDPNDSMAANRLHHRKLQIWDFASGQPLDMPNTESCTASCLMHDGQRIVLARTEKFGNGTTILLWDLLGNELIRQLSYDSAIGFADAVSYLTISKDNRYVVAGFQNSYDGNANFVVFDLSRDPRAKVDAKILALEANVECTAVLDNHEAVTGTRKGELTIWSMRTGKQLRQLVAPPSGYSTLQRSARSPPATMANAHSAEVKAVQISRDGKFLVSASADTTLKIWNLETEKLSSTLKGHTDEVWCCTISSDDEMVVSGSRDGTIRLWKSAGGQLTSLFNAGVDIFSVRLSSDKRTIVALGDKFAARKLVMLQIVHTRTKGGGSRATSPLPVHY

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF02210	Laminin_G_2	Laminin G domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR001791	Domain	Laminin G domain	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR050372	Family	Neurexin-related cell adhesion and synaptic protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15036	PIKACHURIN-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24383.1 global RNA-seq network