Gene detail

Detailed information of RPACG24207.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24207.1	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	tig00116186	332453	334712	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG24207.1

TGAATGTTTCCTGTTTATTAGAACTGACACAACATGTAAATTGCTCCAATACGAAAAATAAAATTAATTAAAACAATTCAACATATCTTTGCATGTATCCAATGGTATACATATTTTCTATTCATTTAACGCATGCAAACAATATGCATTATTATTATGTGAAACTATAATAAATACAACTGTGTCATAGGTCCATAGCGCGAGATCGTCGGCCAATAACGGCGCCTCCAAGCAGTGTATGTGGATCATCCTAGCGATTCAAGTGTTTGAGTTCTCTGTCCATTTGCATCATTGTGCAATCTGGACATACACCCATGCAAATAAAGTCCATGCAGACGCTTCCCTGAAAGCACGAACACATAAGAATTTACAGTAGTGTTTAAGTCAACATGTGCGCATGTTAGCAAAACAAGTACAGCATACACTTAGCAGTGTAACAATTAGTGAGAATTGACACTGGCGTAGAGAGGGTTGTCGGCGCCGGGTGCTACTCTCCCTCAAACGACGTGCGATTATCTTACTTGTTTCTTCTGACGATAAACAATATTGGCCATGTGTACGTGTAAAACGAATATCACTTACATGTACATTTTATACGGTTACAGTAGTTGTCATATGACCTTTAAAACACAGTTACATTTTACATTCGACATAATTTATATTGTTAACTTTTCATTATAAAACCGACATAATTAAAAAAAGACTTAATTTACAAACACATTTAAGAATGCCTGTCAAACAGGGTCTTTGCAAGTACGTTTATTTGCATTGAATGCAAACTGATCACTCTACATTATCTCTCTCTCTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTTCTCTCTCTTCTCTCTCTCTCTTCTCTCTCTCTTTCTGTCTCTTCTCTCTCTCTTTTCTCTCGCTCTTCCTCCCTTTCTCTCTCGTTCGCTCTCTCGCTCTCTCTCTCGCGCTCTCTCTTGCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTAACGATTGTTCTCATTCGCTCTCTATATCTAACTTTATATATCTGTGTCTCTGTGCCTCTGTGTCTCTGTGTCTCTGTGTTTCTGTGTCTCTGTCTGTCTGTCTGCTTGTCTTCCTGTCTTCCTGTCGGCCTGTCAGCCTGTCTGTCTGTCTGTCTGTCTGTCCGTTTCTCTGTCTGTCCGTCCGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTCTATCTATCTATCTATCTATATGTCTGTCTCTCTCCTTTCCTCCTTCCCTCCTTCCCTGCCGCCCTCCCTCCCTTCCTACCTGTTTGACAGACGGACACACACTCACACACACACACACGCGCGCGCGCGCGCGCGCGCGCGCGCGCGCATGTTTGTATGTGTGTATGTCAGTCTATTTGTCGATCTATCGGGCTGTCTTCTGTCTGTCTGTCTGTCTGTCTGTCAGTATCTCTCGCTCGCTCTCCCTCTGTCCCTCGGTCCCTCGTTCAATCGCTCCATCGCTCTCTCCCTCTCTCCCTCCCTCCGTCCCTGTTATTCTCGTTGGAACGTCGGCACGACCTCCTACATGCATCGATGTTATTCTCGTTAAAACATCCGCATGACTTTTATGATGATCTACGTCGACAATGTTCTTGTTTGAACGTCGGCACGACCTCTTACGAGGACCTGCCTCGATATGAATCTACGTAGCGACAAAGACATACCTCTATATTATTCTCCACTCTCAGTTTGGTCCTCATCGCGACAGGAGCCACGTGTAACGCACAGCAGTTTTCTTTCATCCGATTTGACACGTTACACATGAAGCACATGCGGCAAAACGTTGCGAAGCAACCTGCAATGTACGTTGTCAACACATTTCTTTGAGTGTCCTGTACGCCAAAAGTTGGCGGGAAAATATTGAGGTTGGATCAAAATTAACGGTGGTGCAGCAAATATAGAAGAATACACGGGAGAATTACAGAGATAAGTATTGATATTCATATATATTATTCATAAACTAACCATTGGCACAAATTGAGAACTTGGGGTGGAAAACGTTAGTAAGATAAACTGTAATTGCAATAGTTATTCGCAGACATTGTCCGAAGCTTAGGTGGGCGATAGTCGGGGGAAATCTAGTCTGTTTATGTAGCTAGTGTCCTGCTATTCGCTAGGTCGCGGTACTAGCTAAATAAATTAATCTAGCGTAAAAGTGTTGCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06331	Tfb5	Transcription factor TFIIH complex subunit Tfb5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009400	Family	TFIIH subunit TTDA/Tfb5	Interproscan
IPR035935	Homologous_superfamily	TFB5-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28580	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000439	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0005675	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006289	Biological Process	nucleotide-excision repair	Interproscan
GO:0006294	Biological Process	nucleotide-excision repair, preincision complex assembly	Interproscan
GO:0006366	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0006367	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0070816	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24207.1 global RNA-seq network