Gene detail

Detailed information of RPACG24120.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24120.1	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN	tig00116000	1782813	1839384	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24120.1

ATGGAGCGGGGTGATACTGAGCAGGCGGCCCTTGTGGTACAAGGTGAGCCAGAGAAGACGAAGCCAGACTGGAGCCGCTTTGGGCTGAGCTCGGAGCAGCAGCAAGACTCAGAGCAGCTCCGCGCCGACCCGGATGAAGTCTTTGAGCGGCACAGTTCCATGGAGAAAAATGAACTGTTTCGGGAGGACCAGTCGGCTCACAGTCAACCCTGGTGGAAGAGCAACTTCTTTGTGTCGTCTCCGCTACTCTTTGGCACATGGGATGGTGTTTTCACATCCTGCATGATCAACATCTTTGGTGTCGTCATCTTCCTCAGAACAGGCTGGATGGTGGGCAATGCTGGGATTGGTCTGTCTGTGGTCATCATCCTGCTGACCATCAGTGTGGCGCTGGTGGCGGCCATGAGTGCCATTGGGGTGTGTGAACGGTGTCATATGGAGAGCGGGGGCGTCTACTTCCTCGTCTCCCATGTCCTGGGGGCGAGGGTGGGGGCAGCCATTGGCATTCTTTACTGCTTCGGCCAGGCGGTGGCCTGTTCCCTCTACGTGGTCGGGTTTGGCGAGTCTCTGTCGTCTCTTCTCCACCAAGACAGCGTGTGGATGGCCAGAGGCATCGGAGCTGGCATTGTACTCCTCCTCCTAGGCATCAATGTTGCCGGGGTGAAGTGGGTAATCCGCCTTCAACTTGTACTTCTTATGATCCTCTTCGTGGCGATGCTTGACTTCCTTGTTGGATCGTTTGTTCACACAGACATAGACAAGGGGTTTGTGGGCTACAGCAGTGAGACATTTGCCAACAACTCTGGGGCGAGCTACATGGAAGGGCAGTCCTTCTTCACCGTGTTTGGAGTCTTCTTCCCCACTGCAACGGGGGTATTTGCAGGCATCAACATGAGTGGAGACCTGAAGAAAGCTGCAGTCAGCATCCCCTTCGGGACTCTCTCAGCTGTCTGTGTCAGCACTCACCTGTACCTGTTGTTTGCCCTGGTGCTGGGGGCAACGTGTACCCGGACCGCACTTCAGGAGGACTACATGATTGCTGAGAAGGTTTCCCTGGTGGGGGTGTTGTTCCTGGCTGGCCTTTACATCTCGTCCGTGTCCAGCAGCATGGGTGGTCTGTACGGGTCTCCCAGGATCCTTCAGTGCATCGCCAACGAGAACGTCATTCCCATCATGAAGGTGCTCGGACAAGGGCGTGGCCCCAACAAGGTGCCAGTGTTTGCCCTGATCGTCGTCACGGTAACGTCCCTCATATTTGTGTTCATTGGCAAAGTCAACACTCTGGGCCCTGTGGTTACAATGCCCTTCATGTTGACCTACGCCGCTGTCGACTATGCCTACTTCGTCCTTGCCATGACCTTTGACAAGCAGAAGCAGCGCGAAACTCGTTTCTCAGCGACGCCGAGTGACGACAAGCTACTCACAGATGGCGCTGCCAGTCCTGCACACACGCCGCAAACCCCAACGTACGGGACGATGCCGAAGCCTCCTGGGGATGATCTCGACAACCTGTTCCCAGAACGCTGTTTCCCAGACAGACAGGGAGACCCGCCGAGAAAGGGCAGTCTCGGAAGTCCGACGTTCTATGCAGCGCCACCTGGTGGTAAGGAGAAGACAAGCCCGACAGATGTAGATGACACTGCTGGCTTGCTTACTAAGGAAGCATTGAGACAGGCATCAGCTGAGATCTGCCGCCAGCCCCGGTCTTTCTACTCCTTCTTCTGTAGCAGGTGGCTCGCACTACTTGGGTCGCTCTCCTGTCTCATCATCATGTTTGCCATTCAGTGGGGCTATGCTTTAGCCAACATCTCCGTTCTACTCATTATCTATATCTACATAGGTCAAGCGAACCCTGGCGTCTTCCCAGGTATTGCTGAGTTCAGCATGTATGATTGGTTTAAGGACGGATACCAGTATTGTCTCAGACGAGGTCCCGCCCCCCGAGAACAAGTGGTAGTCAACCCAAACACCCCAGCAATGAGAACGACCGCAGCGCAACTCACAGAGGACAGTACAGACTTCGCCGACAGGGGACGCTACCATCAGTCAGAGGTCGTCAAGGGCGAGAACTTTGACGACTACAACTGA

Transcript

RPACG24120.1

GTGAGCTATTAATTAACCCCAGTGCCAGAGAAAGTAAGACCGAAAGCTTGCTACCACACGACGATATCCGCGTCAACTGTGCAGACCATCGGTTGAGGATTCGACATCCGAGGATTCCCGGCGGTCCTGAGCTCTGGCGTCTCAACTAGTCTACATGGTTGTATTGAATAATTGATATGCATTACGTTCTAACGCCGAACCGAGTAGACTAAGACGTAAGAATTAAGGTCTGCTCCTGGCTTGACCACTGTCCGGCTCAACAGTCAAGTGTAGTGTGAGCTGACTGGACTGCCTGTCATACCCCTCTGGTTCAGTGTCCAGTCAACCGCTTGGACACACGAAACATCAGAGTTGATGACATCGCTGCATGTGTAACCTCTGACCTCTGACATGGAGCGGGGTGATACTGAGCAGGCGGCCCTTGTGGTACAAGGTGAGCCAGAGAAGACGAAGCCAGACTGGAGCCGCTTTGGGCTGAGCTCGGAGCAGCAGCAAGACTCAGAGCAGCTCCGCGCCGACCCGGATGAAGTCTTTGAGCGGCACAGTTCCATGGAGAAAAATGAACTGTTTCGGGAGGACCAGTCGGCTCACAGTCAACCCTGGTGGAAGAGCAACTTCTTTGTGTCGTCTCCGCTACTCTTTGGCACATGGGATGGTGTTTTCACATCCTGCATGATCAACATCTTTGGTGTCGTCATCTTCCTCAGAACAGGCTGGATGGTGGGCAATGCTGGGATTGGTCTGTCTGTGGTCATCATCCTGCTGACCATCAGTGTGGCGCTGGTGGCGGCCATGAGTGCCATTGGGGTGTGTGAACGGTGTCATATGGAGAGCGGGGGCGTCTACTTCCTCGTCTCCCATGTCCTGGGGGCGAGGGTGGGGGCAGCCATTGGCATTCTTTACTGCTTCGGCCAGGCGGTGGCCTGTTCCCTCTACGTGGTCGGGTTTGGCGAGTCTCTGTCGTCTCTTCTCCACCAAGACAGCGTGTGGATGGCCAGAGGCATCGGAGCTGGCATTGTACTCCTCCTCCTAGGCATCAATGTTGCCGGGGTGAAGTGGGTAATCCGCCTTCAACTTGTACTTCTTATGATCCTCTTCGTGGCGATGCTTGACTTCCTTGTTGGATCGTTTGTTCACACAGACATAGACAAGGGGTTTGTGGGCTACAGCAGTGAGACATTTGCCAACAACTCTGGGGCGAGCTACATGGAAGGGCAGTCCTTCTTCACCGTGTTTGGAGTCTTCTTCCCCACTGCAACGGGGGTATTTGCAGGCATCAACATGAGTGGAGACCTGAAGAAAGCTGCAGTCAGCATCCCCTTCGGGACTCTCTCAGCTGTCTGTGTCAGCACTCACCTGTACCTGTTGTTTGCCCTGGTGCTGGGGGCAACGTGTACCCGGACCGCACTTCAGGAGGACTACATGATTGCTGAGAAGGTTTCCCTGGTGGGGGTGTTGTTCCTGGCTGGCCTTTACATCTCGTCCGTGTCCAGCAGCATGGGTGGTCTGTACGGGTCTCCCAGGATCCTTCAGTGCATCGCCAACGAGAACGTCATTCCCATCATGAAGGTGCTCGGACAAGGGCGTGGCCCCAACAAGGTGCCAGTGTTTGCCCTGATCGTCGTCACGGTAACGTCCCTCATATTTGTGTTCATTGGCAAAGTCAACACTCTGGGCCCTGTGGTTACAATGCCCTTCATGTTGACCTACGCCGCTGTCGACTATGCCTACTTCGTCCTTGCCATGACCTTTGACAAGCAGAAGCAGCGCGAAACTCGTTTCTCAGCGACGCCGAGTGACGACAAGCTACTCACAGATGGCGCTGCCAGTCCTGCACACACGCCGCAAACCCCAACGTACGGGACGATGCCGAAGCCTCCTGGGGATGATCTCGACAACCTGTTCCCAGAACGCTGTTTCCCAGACAGACAGGGAGACCCGCCGAGAAAGGGCAGTCTCGGAAGTCCGACGTTCTATGCAGCGCCACCTGGTGGTAAGGAGAAGACAAGCCCGACAGATGTAGATGACACTGCTGGCTTGCTTACTAAGGAAGCATTGAGACAGGCATCAGCTGAGATCTGCCGCCAGCCCCGGTCTTTCTACTCCTTCTTCTGTAGCAGGTGGCTCGCACTACTTGGGTCGCTCTCCTGTCTCATCATCATGTTTGCCATTCAGTGGGGCTATGCTTTAGCCAACATCTCCGTTCTACTCATTATCTATATCTACATAGGTCAAGCGAACCCTGGCGTCTTCCCAGGTATTGCTGAGTTCAGCATGTATGATTGGTTTAAGGACGGATACCAGTATTGTCTCAGACGAGGTCCCGCCCCCCGAGAACAAGTGGTAGTCAACCCAAACACCCCAGCAATGAGAACGACCGCAGCGCAACTCACAGAGGACAGTACAGACTTCGCCGACAGGGGACGCTACCATCAGTCAGAGGTCGTCAAGGGCGAGAACTTTGACGACTACAACTGACGCTATACATCGAGTAGTAGTTGTAGGCAAATGATGTGTTCTGGTGTAACTAAGTCAGTGTGTTGTTGTAGTTGTCATCGGACGAATCGCCAGTTCTTGTGTACTGTAGATGTTGGAGTGAAGACACGAGGATATCGTCCAGGGACTCTCTTGCTGTGTTCAGTGTCACGCCCTGCCTTGTGGGTGTGTGCGTGTGTGCGTGCGTGCATGTGTGCGTGCGTGTGGGGGGTAACGTAGGACCTGCCCCTCTGACTGGTACATAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05456	eIF_4EBP	Eukaryotic translation initiation factor 4E binding protein (EIF4EBP)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008606	Family	Eukaryotic translation initiation factor 4E binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12669	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008190	Molecular Function	eukaryotic initiation factor 4E binding	Interproscan
GO:0045947	Biological Process	negative regulation of translational initiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24120.1 global RNA-seq network