Gene detail

Detailed information of RPACG24042.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24042.1	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	tig00116000	484722	523670	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG24042.1

TGCTAGTTGGCCAGCCGCTGGGACAGACATGTGACGACCCTTGCTAATAAGTACCTGCTTCAAACTGGCCAGCTTACTGACATCTCTCTCTGGAGATGAGGAAACATCGGCGGTGACTACACCAACGACTACCACACCAACGACTACCACATCGAGTGGTCAACACATCGAGTGACCACCATGAACGTCGTCTATTACCGCATGGTCAATGGCTATGGCTACGTTCCGTATACTGGGAACACATCGCTGACCACCGGCGTCACCGGTCAGCCACACGCGGCCTTAGGAAGCAGTTTCAGCGGACTGCCTGGTTCGGGGCAGGGCTTGGGCATGTTGCCCGGCCCACAGGCCTTGATGCCCACCCCGGCCACCAGCCCCCTGGCTGCGAGCGCCCTCGCTACCAACCCCCTAGCCAATGGGGCATCTTCACTCATGCCAAAATGGATGTTACCTAATTTCTCAGCCACTCAGATACAGTACATGTTTCGACCTCGTATGACAAAGACGAAGACCACAAAACCAGTTCGATGTGAGACCTGCAATATCACACTTAATTCAGAGCAACAGGCAAAGCAACACTTCAATGGCAAAAGTCACCTGAAGAAACTTCGGCAGCAGAGTGCACCTGCAGATGAAAAGAAGAAATTGGCCAGTGGCGATGAGTCGATGGAAAAGAAAAAGTCAGATGAAGGGGATGAAGAGAAAACTGACGATGATGAAAATGATAAATCATCATCGACAAAACCATGTTCTGTGGCGGCAGATGATGACGTGGCATCTGTGTCGGTGACAGCAGAAAGTACTGCGTCATCATTAACTGTAGCAAAGTACAGCTCAACAGCAGCTCCCTCTGCTGGTGAGGCTGAAACATCAACATCCGAAAGTTCCGAGGGTGCTGAACCAAAGAACCAATCAGGTAAGGACTCGTGTGTTGTAGCAGGCACAGATACAACAACTACCACCAACATTGACTGTGAGGCATCTTCAGCCGTGCAGGCATCCACAGATATAAACACCTCTGAATCTGACGAAGCTGCGTCACGGTTGTATGAAAGTGATGGCAAGGAACAATCAAACAGTTCCCCACTGCCAGATCAGCCTACAACAGCCACGACATGCTCAACAGAGCTGGCTGATAGTCAGAATTCTAACCAGTCTAGTTCGCAGGAAAACAGCGGCACAAAAACAGACACTGGCAGTCAGGAGAAACACAGGCAGGAGAATGCGTTTAGTTCTTCTGGCGATGCCAACAAACAGGTTTCAGTGTGGAAAGGGCACTGGGAACGTTCATCCAAGAGCAACCGACACACAAGTGGGTGGGGTGGCAGCACCGAATATGCCACATCAGGTCAACGTTCGGTGTCGAACGACGACCCAGTCTCAAAGGCGGTGATGGACAACATTATGGGGCGGTTGTCACGGAAACGAAAAACAACAGAAATTACGTGTACTGTCTGTGATATCACGTTCAACTCCGATGCTCAAGCGACAGAACATTTCCGAGGAACAAGACACATCAAACGCGCAAAGTCAGCAGAGAAAGATGAAACGCAACATGCAGGTCAGATGCACCAGACGGCTGTGAAACGGAGGGGTGCAGAACAGAGTTCGCCTTGCAAGGGTCCAGGTTGGCAAGAGGTGGCAGGCTACAAGGCGGGGTGGTTGCACTGCAAGACATGTGACATCAGTGTACCCTCCTCCTCCCAGCTACAGCGGCATGTAGTCAGTGATAGACATCGTGGAAAACAGGAGTCACAAATAGATGCGTGGCCAGGCCACCAGTGGGCGCCATCTGCACTGTGAATGGTCATGTCTGTTGTGAGGTGAACATATCCATGCTATAGAGAACAAACACCAAAGATTAGCGATGAAGCTGCCCTTGACCTGAATCTTGGAAGAAAGTGTTACTCAGTGTGAAAGACATGACAGACATAATAGCAGACAAATTGTTTGTTGTCGTGATATTGTTTTCCATATTAGATGACATATGAATTTAATTTCTAATATCAATGCTGTAAATTAATGTTTATTTAGTGTTTCATTGAAACCAGTTACGATGAGTTCAGATTGGGAATTTTGAAAAATACTGTAAAGTGTATCTACGGCTGTTATATTTCCATGGGTACATCATTTGAAAGCAAATATATACCATAAAGATGTCTATGAAATAAGTGACAGGTTTCAGTTAAGAAACGACATATATGAGTGCTGTGCTCAACTACACGTAACATTTTTTCCATCTCTTGTTTGTTATATAACATGTCAATTATGTAATGTACAGTTCTTTTTGAGGAACTGAATACAAAAGAAGAAACAAGAATGTTCTACAACCGGTGCACAAAATAATGGAAATGTTAATGTACTGTATAAAGATTATTCCGTTGTCATTTCAATTTTGCATTGACATCATAGCAATACTGGTTTGTTGATGGTAGACATATGAACTCATGAAACGTTTCATAAATGATTGTTCATGCAGTTGATCAAAGCGGCATGGATCACGATTAATTCTGTGTTAAACTTGTCAGATAGTGGAAGCAGAGAAGAAGTCTAGTCTGTTCAGTAAATTTACTTTGCTATGTGATTTTATTGTTATTTATGTAAAAAATGAACTTCAAGCATGAATAAATAGGTCGAATTGCAATAATCATTTCATCATATCACATCTGACAGTCTAAGTGACTAAGTGTAATTTAAGTATGAATTCAATGATGAATATGTCTTACTATGTTTGGATGTGTATGACTGTCTAAATGTGTCGTGCATGTATTTTTTAATATTTTCTAAAATGTTGC

Protein

RPACG24042.1

MGREHDLLDAARTGNCGVIEKIVAQRHKRMGQLPLALQAPLASLTRRTLNINCQDSNGDTPLHLAALNGHMDAVRLLLQHEGSANMKDSRGCFPLHLAAWNGHADICRVLLTHGPSIAKVNEQNAISETALHCAAQYGHDKVVSVLLEYHANPNIRNHHKESPLDLACQYGRLETAQQLLRRHPTLPCHNIDKQSPLHLAARNGHRQVVQLLLDAGFDINTRMETGTALHEAAIFGKGDVVRLLLDNGIDTSLTDSENRTALEVLSEHRSQISLDIGNIILDHTEGIDTLYRRSCYLLDTSYAATVYDTVSLQEPLTSVRYRDNKVTSATSPDVFELYSQVVKQDRVKASYSSKESVSSASSSIHETPPIPMKQCDGRMEEPIYDTPMPVATATRSAPAPIPKPRLLLPSSGLSGSTNSLPHSPTDLAEGVTPKKPPRRHPPSPRGGGGKSANGRTPRPGNVSMVTPIGDTGRSCSVDERRSPSTGSRTASERSESERTESESSDSGLRYRASVHAQIVGNQSLMTTTSSSRMEKILSVPVEQVQVSCEVCEDGTEYFISEKSPPAEEKQTTGTVCDKTSHDAQEVSTSTSRPPSLEFGSQRTRDFPLSPTGYVQPPTPDHPPPSPSRAACDIQEQINPGEKRRSKDMETITEAELLSQSAVPSPRPWELGTPDTTSGLLQLLRDHTGQRSTSSQADPIEIVANKNNPFLDYGSVVLPYSEVLILVAAALDYGSVVLPYSEVLILVAAALDYGSVVLPYNEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAVALDSGLVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAVALDSGLVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGSVVLPDSEVLILVAAALDSGRVVLPDSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGRVVLPYSEVLILVAAALDSGSVVLPYSEVLILVAAALDSGSVVLPYSLCKGSIPLDERRAKSTIYENLLTHQRRRESAPGQCTTFEPVAEEGNDLNNPDRSSDGKKEIVIMRSISRMSERNVKSDLDQNRNCASTFAGEDGGEHPLDEKEEWAKINDILSSCGGRMSIAEFGDYNYFEKRLQQIFSHSKDGPPMQSVGDWLDSLGLPQYENTLVANGFDDMDFMGQNVLDRNDLLELNITDPDHQDRILTAAAKVPKVKSIDHFLIYMESHVLNYMESHVLNYMESHVLNYMESHVLNYMESHVLKYMNGHVPNYIMSHVPNYIEGHVLNYMETHVPNYMEGHVLNYIEGHVLNYMETHVPNYMESHVPNYMEGHVPNYMEDHILNYMESHVLNYMDNHVLNYMESHVLNYMDNHVLNYMEGHVLNYMESHVLNYMESHVPNYMERHVPNYMESHVPNYMEDHVLNYMESHVPTTWRTMSQLHGGPCPELHGESCPKLHGEPCPKLHGESCPKLHGEPCPKLHGEPCPKLHGEPCPKLHGEPCPKLHGGPRPKLHGGPCPELHGEPCPELHGEPCPELHG

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR033635	Family	Ankyrin repeat and SAM domain-containing protein 1/Caskin	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24174	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0046875	Molecular Function	ephrin receptor binding	Interproscan
GO:0048013	Biological Process	ephrin receptor signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24042.1 global RNA-seq network