Gene detail

Detailed information of RPACG24038.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24038.1	SERINE/THREONINE-PROTEIN KINASE	tig00116000	425002	446282	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24038.1

ATGAATGACGTCACTGGTACGCCCACTCAATCAGATGAACAGTTGGCGAGAGACGCGGCGCCATCAGAACATGACTCGACAGCCAGTGAGCTGAGGGAGGACGCATCGACAGACAGCGACAGATCATCACGGAATCGCAGCAGACGATCTTCAGCAGTTGCCACGACCTCAAAGTCAGCCGAGTCGACCACATCAACCCCTAAATCGAAATCTCCCAATGCCCCTGTGTCCCGGGCCGCGCGTTCCACTCCAGCCCCAACCACGGCAAGGATGGCGGGCGAAGCTGCCAGCAAACAAGTAGCGTCACCGACAGGAAGTGCAAAGAACTTGAAAGTGCCAAGTCGGCCAGGGATTCCGTGGGTTCCCGGTTCCCGGTTGGAAGCAAAAGATTACCTGGACAAGTGGTATCCAGCGAGAGTACATGAGATCGACTTCGAAGATTGTACCGTGTTGATCCACTTTGAAGGCTGGAATCAACGCTATGATGAATGGGTGGCCATGGATAGCGATGACCTTCGACCTGTGACCCGACACTCGGAGAGGTCAAAAGAGAAACCAAAACGGGTTCATAGGGATGAGCATCGGCCAGGCGATTACGTGTTCGCGAAGTGGACAGACTGTCGGATGTACCCTGCCCGCGTCACGCGAGTCAATCACAACGGATCGTACGAGGTTCTCTTCTACGACGGCTTCCGCAAGACAGTGCAGGAGATGAACATACGCGCCATGCCGTCTGATATACAACAAGAGTACGCAAAGGCGGGTCTGCTTCCCGATGGAACCAAGAGGGGCAAGTGTCCAGACGGAGTTGGTCTGTCAAAGAGCGTCCCGCCAACCCTCAAGGACGTCACTGCGATGCTCAAGGCAGTCGCTGTTAAACGTGGTAAAGAGGAAGATGTATTGTGCAAGAAACGAAAGCGAATGTCAATAGGTGAATCAGTGATTGCAAAGAAAGCACGCTTAGCAATGGACGATGCTGATGTAGGCACTGAACAGAAGTCATCAACAAAGCCGCCAAAACAGATAAAGATGACTACTTCTTGCGATCGCCAGTCGACATCAAGTTCCCATGGTGACAGTTTGGATGAAGATGACATGAAACTGACAGATTTGGTGAAAGGAGACTTGGCTGGGTCAAGTGCATCATCTATCTCAGATAAAGGTGAGGTCGATGCGATGAAGGAGCCGCCCTGCATTACTGACCCTCTGCCACTCGAAATTGGCCTGAAAAAGAAACGACAATCGGTGGCCAGGAAGGAGTTCAAGGTTGAGGCAGATCACAATGAGTTCAAGTGTGCGGAGGCGGCATGTGGGAAGAGTTTTCGCAAGAAAAGTCTACTTGACTATCACATCAAGTATTACCACATGACCCCTGATGCTACTACCACACCCACAACACACACGCCCGCACCCACAGCTCCACGTAAACGTAAGAAGACCACCAGCACTTGTTCAACGGACTCAGAAATCTCCGTGGGGGGTCATACGGGGGGATCAGTGGGGCGGAAGAAGCGAGACAGTGCAGCATCTCTCTCAAGTGTCCCCCCAGATACACCCACAAGTCACATGGCTCCTGTTGTCCTTAGCAACAGCCCAGCAGCTGCAGAAACAACATTGCGGGAAACAGCAGTGGAGACACGCACCGTAGAGGAAGCTCCCCCTGGTGGTGGCGAGGAGAGCATACCAGAGGAACCGGAGGAGGATAGGGGCGTTGCCACGGCAACAAGCAGCCCGGTGAAAGTGAAGGAGGAGGTCGTGAACTGTGTCTGTCGCATGACGGAGGAGAACGGGCTGATGGTGCAGTGCGACGTGTGTTTGTGCTGGCAGCACGCCATCTGCATGGAGCTCAGTGAGGAGGTCCTGCCCTCCAGATACGTCTGCTTTGTCTGCTCCAATGCTCCAGGTCTGCGGGAGAGCGCTCGTTACCTCCATGACCAGAACTGGATGCGGGTCGGATCGATGGCGCACTTTGACTTCCTGTCAGCCGACACGAATGCAGCGCACAAGACACAGATAGTGAGCACCACCCACGACCTTGTCGGCGACGTGCATCACGTAAAGGCGGTGCTTGATTCACTGCGCTGCAATATACACATACTCGAGACAAAGACGCAGCCTGAACTTGGATTCTGGACTGAGAACTGGGATGAGAAATTGTCAGTAAAGAAGGCAGATTCAGAGGCTGGTGTTCGCCCAAAGGATGCAGTGAGGAGGACACTTGACATGCATTCCGACCATCCCGGTGACCTCAGCAGGGACTTTCGCCAATGTGAACGTGACGTAAAGGTCAGCGAAGTAGATATAAAAACAGAGGTCAGCGTAAAGGTGGAAGTTGATGCAGAGATGCCATCTGAGAAGTGTTCACAGGTTGCAGTTGATGGTGACAAAAACTCAGGAGAGACAAATATGGAAGTAACAAGTGAGAAACTGCTTTCTGGGAAGAGTTCTTCAGATGTTTGCGTGAACTCTGGCAAATCTGGTGTGAGAGATATCATCCCTTCTGTGGTGCCAGTGTGTCAACTGGTGTCGGCGGTGGTTGACACGTCATCTGGGGGCGATGTCGTGGCAGAGGGAAAAGACAGTAGAAAGTTGAAGAGTGAAGACAGAGAGGCCTCCTGTGAGAAACATCTCCTACATCACATCGTCTCGTCACAGTCAGCCATTCACTCCTGTCTGGACGTCATAGAGGAACAAGTGACAGTCCTGGAGATGAGGGAGGAGACAGGCCGGGATGAGGAAGACATCCTGCGAGATGCTTCCCACATCAAGCACTCACTCCATCAACTTATTGCCGACCTTGCAACAGTACGCAAGATAGCCACCTTCCACTGA

Transcript

RPACG24038.1

CGTCAGTAAATAAAGTACAATCATAGGCGTGTTACAAAGCAGACGTAATGACGTTGAGTATATTGCCAAAATAATTACTGCAAAGTTAGTGCCATAACATGAATGACGTCACTGGTACGCCCACTCAATCAGATGAACAGTTGGCGAGAGACGCGGCGCCATCAGAACATGACTCGACAGCCAGTGAGCTGAGGGAGGACGCATCGACAGACAGCGACAGATCATCACGGAATCGCAGCAGACGATCTTCAGCAGTTGCCACGACCTCAAAGTCAGCCGAGTCGACCACATCAACCCCTAAATCGAAATCTCCCAATGCCCCTGTGTCCCGGGCCGCGCGTTCCACTCCAGCCCCAACCACGGCAAGGATGGCGGGCGAAGCTGCCAGCAAACAAGTAGCGTCACCGACAGGAAGTGCAAAGAACTTGAAAGTGCCAAGTCGGCCAGGGATTCCGTGGGTTCCCGGTTCCCGGTTGGAAGCAAAAGATTACCTGGACAAGTGGTATCCAGCGAGAGTACATGAGATCGACTTCGAAGATTGTACCGTGTTGATCCACTTTGAAGGCTGGAATCAACGCTATGATGAATGGGTGGCCATGGATAGCGATGACCTTCGACCTGTGACCCGACACTCGGAGAGGTCAAAAGAGAAACCAAAACGGGTTCATAGGGATGAGCATCGGCCAGGCGATTACGTGTTCGCGAAGTGGACAGACTGTCGGATGTACCCTGCCCGCGTCACGCGAGTCAATCACAACGGATCGTACGAGGTTCTCTTCTACGACGGCTTCCGCAAGACAGTGCAGGAGATGAACATACGCGCCATGCCGTCTGATATACAACAAGAGTACGCAAAGGCGGGTCTGCTTCCCGATGGAACCAAGAGGGGCAAGTGTCCAGACGGAGTTGGTCTGTCAAAGAGCGTCCCGCCAACCCTCAAGGACGTCACTGCGATGCTCAAGGCAGTCGCTGTTAAACGTGGTAAAGAGGAAGATGTATTGTGCAAGAAACGAAAGCGAATGTCAATAGGTGAATCAGTGATTGCAAAGAAAGCACGCTTAGCAATGGACGATGCTGATGTAGGCACTGAACAGAAGTCATCAACAAAGCCGCCAAAACAGATAAAGATGACTACTTCTTGCGATCGCCAGTCGACATCAAGTTCCCATGGTGACAGTTTGGATGAAGATGACATGAAACTGACAGATTTGGTGAAAGGAGACTTGGCTGGGTCAAGTGCATCATCTATCTCAGATAAAGGTGAGGTCGATGCGATGAAGGAGCCGCCCTGCATTACTGACCCTCTGCCACTCGAAATTGGCCTGAAAAAGAAACGACAATCGGTGGCCAGGAAGGAGTTCAAGGTTGAGGCAGATCACAATGAGTTCAAGTGTGCGGAGGCGGCATGTGGGAAGAGTTTTCGCAAGAAAAGTCTACTTGACTATCACATCAAGTATTACCACATGACCCCTGATGCTACTACCACACCCACAACACACACGCCCGCACCCACAGCTCCACGTAAACGTAAGAAGACCACCAGCACTTGTTCAACGGACTCAGAAATCTCCGTGGGGGGTCATACGGGGGGATCAGTGGGGCGGAAGAAGCGAGACAGTGCAGCATCTCTCTCAAGTGTCCCCCCAGATACACCCACAAGTCACATGGCTCCTGTTGTCCTTAGCAACAGCCCAGCAGCTGCAGAAACAACATTGCGGGAAACAGCAGTGGAGACACGCACCGTAGAGGAAGCTCCCCCTGGTGGTGGCGAGGAGAGCATACCAGAGGAACCGGAGGAGGATAGGGGCGTTGCCACGGCAACAAGCAGCCCGGTGAAAGTGAAGGAGGAGGTCGTGAACTGTGTCTGTCGCATGACGGAGGAGAACGGGCTGATGGTGCAGTGCGACGTGTGTTTGTGCTGGCAGCACGCCATCTGCATGGAGCTCAGTGAGGAGGTCCTGCCCTCCAGATACGTCTGCTTTGTCTGCTCCAATGCTCCAGGTCTGCGGGAGAGCGCTCGTTACCTCCATGACCAGAACTGGATGCGGGTCGGATCGATGGCGCACTTTGACTTCCTGTCAGCCGACACGAATGCAGCGCACAAGACACAGATAGTGAGCACCACCCACGACCTTGTCGGCGACGTGCATCACGTAAAGGCGGTGCTTGATTCACTGCGCTGCAATATACACATACTCGAGACAAAGACGCAGCCTGAACTTGGATTCTGGACTGAGAACTGGGATGAGAAATTGTCAGTAAAGAAGGCAGATTCAGAGGCTGGTGTTCGCCCAAAGGATGCAGTGAGGAGGACACTTGACATGCATTCCGACCATCCCGGTGACCTCAGCAGGGACTTTCGCCAATGTGAACGTGACGTAAAGGTCAGCGAAGTAGATATAAAAACAGAGGTCAGCGTAAAGGTGGAAGTTGATGCAGAGATGCCATCTGAGAAGTGTTCACAGGTTGCAGTTGATGGTGACAAAAACTCAGGAGAGACAAATATGGAAGTAACAAGTGAGAAACTGCTTTCTGGGAAGAGTTCTTCAGATGTTTGCGTGAACTCTGGCAAATCTGGTGTGAGAGATATCATCCCTTCTGTGGTGCCAGTGTGTCAACTGGTGTCGGCGGTGGTTGACACGTCATCTGGGGGCGATGTCGTGGCAGAGGGAAAAGACAGTAGAAAGTTGAAGAGTGAAGACAGAGAGGCCTCCTGTGAGAAACATCTCCTACATCACATCGTCTCGTCACAGTCAGCCATTCACTCCTGTCTGGACGTCATAGAGGAACAAGTGACAGTCCTGGAGATGAGGGAGGAGACAGGCCGGGATGAGGAAGACATCCTGCGAGATGCTTCCCACATCAAGCACTCACTCCATCAACTTATTGCCGACCTTGCAACAGTACGCAAGATAGCCACCTTCCACTGAAAACAGACTGACCAGTGGTCAAATATCACTCATGAACCTGTCAACTCAGATATTGGCTTTCATTCTTTGTACTGGGCGATTTGAGTGTAATATTACATACCGTTTAAACTGTATGTATTTACAATCTTTCCGTATTGTCGTTCTAATGAACCTCTTCATCAGTAATACTTTTAATCAAGCAAAGGTAAATGTAGAGTTAAAAAAGTAAGGATTTTTGAAAGGAACGATCTTGAGTATTTCCAGTTACATCCACATTCCTTTATTTCTGATTTCTGATTCAAGATATAAAACAAACTCGCTTTATATTTACTACAGTAACCTTTTTATGAAGTCTGGGTGATATCACTAGAGAAATTAGTAGATTGTTTAATGTTTGCCCAAACATTAATTCAAACATGTCGGTTCTGGGAATGTTCATGTGAATGTTCGATAACATTGTGGACATGTTTTTGGCATTCAATTTGAGATCATCTATGGACCATGCAGAGTATTGTGGCCAATAAACTTAGTAGTTAAAACTAATTATTTGTGTAGCAGTTGAGTTTAGGGAATGTAATGACCAAAGTCAATTCATCCAACCATTTCCATGAAAGCAAACGTTTCTTGCAGATATACAACTTAGACAGCGAATATGTTACTTATATGGACCACAGTGAACTAGTTGGGAAAGTTGATTTATGTGTGCAATTTGACTGCAATAAGGAAGATGTTTTGTAGAATGTCAAGTACAATTTGTGTTGATTCAGCATGGGTATTATATGTAGTGTAAATAAATGTACATAATTTAAATAAAGTAAACAACTTGTTGACAAACTCATTGTGTAGAATGGTGCTGTTTGTGGTGGCTGAGATATCTTATGGTTTACATTACGATATTACGTTGCATACAATGAACTTATATTATGTTGTGCCTGCATTCGTGTAGAATTATATAAAATACACAACTAACAAAGGTGTTCAGTTTTGAAAACATGCACATATTATATAGACAATGTTATGTTACAGATGAATGGCTTATCATTTAGACAGTATGTCACAGATTCAATTACTGATAGACTTGCTAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR050236	Family	Serine/threonine-protein kinases, AGC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24356	SERINE/THREONINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004674	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0018105	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24038.1 global RNA-seq network