Gene detail

Detailed information of RPACG24031.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24031.1	BAP28	tig00116000	338837	340439	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG24031.1

LQHVFIIMTSLARQLERLAVPYTQSLLGQDTRRASLLFDPKEAANLDKEAVFALALSGLEVLETIDPTFVEFEATLFNSASHNWERSLQTKEVNDQLDETITQFLVQLSPYFLLRAAHKTLEWLIYKYHVHQYNVDSLLLCVLPYHETKIFVRVVQLLPISQPTNKWNWIHTAASAGVPLARQTLVNHCRGDPGFFAFICEIIPKFIKCHGTESKQLRAVIALFMCTMLGALQREEGITERLLSVVIPHLIRGFKSRCVEYRAACCMVLSQLASVAQLKESVLLSLLSVATKRMPNGLAVEVLSCLAVICQTQTLKTLPKKSFKHICRTPGIVQLLTNLSHKYQVNPLLRLWFDRLIQAAVELRGSATYSSSEGSEGLGQIKPDYPSLLQLALAEVVIDADLAKYLARSLMEKLLECRQKLTPYDDEMMSRWQQLAKHVLTTIEHRHSAAVEVVLEEALAKHHADTALLSTLQEMMSLTSMPLKYQLLPESGTCLLLGLSHAQPSIRLLALQQLNKSFHENQDVPGDFLQDVLLMRLADDSVHVATAVLHLGLKLPEIIEKKKLLVCLLSVVKTRHGLPKWKPVTTAALEIMCSPAMETVMPDLGLTLLPYLLITSDGDTAEIEDAKTILQSAGNGRDKLLQRISPAWLREVSHVVGQPSLELITRLNCVVVHGLTGAISKMSSNEIREWVSIVLSGDAQSNRSTFLLICALAEQLRSSTSRARSKTRSKIEKQVDHVKTCSHLLRVLTSLADTKKQITQVALPNSSLEEMLAQSLPKVSPTDAVPASLQLWATEKIVFTVKTFSFSADGGMWMTVDDCVSVLVTLLDLLMTRACVDSATDNWRQLMNKLVMDNLDEAMLHRLFPYLWTSDISHDAPCDDQALPRVSALLQVGSFYLLASRWQQVSGSVNNVLQEGCAVIPSLLVSLLSQQVAVRRAVLRCFHVVRQHGHHDNSVFVSLIKRLVTQEEEILADHRHTTQVIGKFYSKLDKSSRQKSLQQLLQWTTSADTPADMKERLLELLSSVPHKHVLDPVLPLGMALLDTRVTSASQLTKSQVNILQLILTRFDNNTASDLHEGQSLLIFLLKALTTEKGASGVDAPQCRAVTQVTHEFFWALPDIGSQRKIVTCLLDVATTTKCVTVSTAFRSCLKQLKLNGAQIFHELPGEDASEVATVKGKKRARVAKLASPILYRKLTLLLEVMTSHKKIKDSENLVARLFVLLNRLFSQEAEEVEYCRQLILTCLLNMCRRWKQKPAQEESFNVEVLVECIRGSSSPHTQRQALLLMASVTHLLPEYILHNVMSIFTFMGTNLIQQDDSYSFHVITMTMQTIIPALVKAHEGDRSDSLSEQIAGILRVFIDARHHVPKHRSQLLFHQLIDTIDPQRHLWMVMVLMMESAIRSRNVPTVTKDLVVDETRKTTFRIDQDIEFMVQICEQFPAVSQMRACTQVMAFLQKLSHRNEQGSRRRQGETLDLIHADTLSVQQLRQLQMHITRLVSVLLSCESFVTQVLVMYTKKTESSQVDEFSAFVRECLCYLTAVTRNQGAVSGLDPTVVKFWKSVLHKVYDILDKVNYLLPTSVFLEVVSTLMQHSLAGVRRKALELLNRRLQQLQPNALSETEVQSLLVLVEKLVTMATKGQLITMATTGKRATPAMMSGHDMDADIVTVKQLALFGLKLMCKVLGAQHPKAFAKVFDISIEILDKSSTDNPSHPPPMTASALLCLAELCTTTKAHAIPYLSQFMPPLIATLNNKTLLMGRELVLICSLTALHRITSSLPHFLSPYLIEILLAVCHISSLVSTTDKGRKSQANIRLCGVRHQVASAVSPRVLIPALSDCYTRLLAENQDGVLLLLEILQESVESMNKDDLATQHAPLVALFCRVLDFSNTPQLKLSWFDTRQVESAAINAVLAMVVRLAENSFRPMFYKLYDWSSREKSEEYSNRQLTFFRLAERLSERLKSLFNLFVGHIIKTAATLLEQNNTVHADPTYFGADETGTEKSCLLLGCIMGCLHKCMLYDTDGFVNANIFKLLLQPLVDQLENFVGGDGAYEARVRDHVTPCISQLGVSCRDDTSWKSLNYQILLKTRHNLPMVRFAALKTIEDLAQKLGDEYMTLVPETIPFLAELMEDESEEVEQLCQQVIASMEDVLGESLQKYF

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08146	BP28CT	BP28CT (NUC211) domain	Domain	Interproscan
PF12397	U3snoRNP10	U3 small nucleolar RNA-associated protein 10	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR012954	Domain	BP28, C-terminal domain	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR021133	Repeat	HEAT, type 2	Interproscan
IPR022125	Domain	U3 small nucleolar RNA-associated protein 10, N-terminal	Interproscan
IPR040191	Family	U3 small nucleolar RNA-associated protein 10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13457	BAP28	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0030515	Molecular Function	snoRNA binding	Interproscan
GO:0030686	Cellular Component	90S preribosome	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034455	Cellular Component	t-UTP complex	Interproscan
GO:0045943	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24031.1 global RNA-seq network