Gene detail

Detailed information of RPACG24013.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG24013.1	FRIZZLED	tig00116000	90073	118652	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG24013.1

ATGGGTAGTAATACCAGAAGAAGAAATGCCGCTAAAAATAACCGACATAAAGTTAATAACCGCCAAGAAGTCAGCAACCAAACCCAGACACAAGGCGACAACTCGGTTCAAGATGTAAATCTGGACAAGTCTAGGAAAGTCAACCGTCCCACTTTGACAAAGAAAGCAGCAAAGCAAAGGTGTGGAAACTGCTGTGTGGTCGTGGTTGTGCTTCTGTGTGTACTCGCCACTTCAGCCGTGTACGTGTACAACTATGTAGACACGGCGCCTTTGATAGCTCCACTGAGAGAACAAACCAGAGTTTGGATAGATATTCTGCAGCGAGACTTTGAATCCGTAAGGAAGAGCTTCTTTGGAGAGACCCCAACATCAAAGGATACGGAGACCGGAAGAGAAGAAACTAAAGATGCGAGAACAAAAGATGGAACCTCCACTGATGGTGACACAAGATCTGGAGAGGATGATGATGATGGTCTGACTACGGAGCCAGCAGCTGGACAAGATGCAGCTGGACATGAAGAAGCTGATGAGGTACCTAAGAAGGATGAGGAGACAGTAAAGGATGCAGATAGAGGAGTTGATGGTGAAGTGGATGCGGATGATGCAACGTCTGAGAAGACCCGGGGACAGAGGAGTGCCGCGTCACAGGACAACGAAGACTCACATGTACATGAAAAAAAGGCTGACACACACACAACAGAGTCACCTAGTGCAGAAGGTAGTGAACTAAAATCTGAGCCACCTAGTGATACTGTTGAAAAGACTGAACAGGAAACAGAGCCACCTAGTGAGACAGTTGAAAAGAGTGAACAGGAAACAGAGCCACCTAGTGAGACCGTTGAAAAGATTGAACAAGAAACAGAGCCACCTAGTGAGACAATTGAAAAGACTGAACAAGAAACAGAGCCACCTAATGAGACAATTGAAAAGACTGAACAAGAAACAGAGCCACCTAGTGAGACAATTGAAAAGACTGAACAAGAAACAGAACCACCTAGTGAGAGTGTTGAAAAGAGTGAACAGGAAACAGAGCCACCTAGTGAGACAGTTGAAAAGACTGAACAAGAAACAGAGACACCTAGTGAGACAATTGAAAAGACTGAACAAAAAACAGAGCGACCTAGTGAGACCGTTGAAAAGACTGAACAAGAAATAGAGCCACCTAGTGAGACAGTTGAAAAGACTGAACAAGAAACAGAGCCACCTAGTGATGACATTGACCTTTCGGAAGAAAGAGAACCATCTACTGATGATACCGACATTTTTGATGAAGACGGAGAGCCACCAAGTGACAACATTGACGATTTTGACGAGGAAGAAGAGTCACCTAGTGACAACATTGACGATTTTGATGAGGAAGGAGAGTCACCTAGTGACAACATTGACGATTTTGATGAGGAAGGAGAGTCACCTAGTGACAACATTGACGATTTTGACAAGGAGGGAGAGTCACCTAGTGACAACATTGACAATTTTGACAAGGAAGGAGAGTCACCTAGTGACAACATTGACAATTTTGACAAGGAAGGAGAGTCACCTAGTGACAACATTGATGATTTTGACAAGGAAGGAGAGTCACCTAGTGACAACATTGACGATTTTGACGAGGAAGGAGAGTCACCTAGTGACAACATTGACGATTTTGACGAGGAAGGAGAGCCACCTAGTGACAACATTGAAGAATTTGATGAGGGAGGAGAGCCACCTAGTGACGACATTGAAGATTTTGACGAGGAAGGAGAACCACATAAAGATGACATTGAAGATTTTGATGAGGAAAGAGAGCCACCTAGCGACAAAATTGAAGATTTTGACAAGAAAGGAGAGCCACCTAGTGACAACATTGAACCGTCAGAGCAGACGACAGTGCCACACAGTGGTGAAGAGACGTACAAAATACCTGAGGATAAAACTGAACATTCAACGGACACAGCTGATGAGAAGGAGTTTGTCAGAGATGATAAACGTGACCAAACTGCACACCCACCTGGTGGCAAATCTGTGAAACAGGAGACAGAGAGTGCAACGGTTGATTCAAAAGAAGAAATGGCTAAATCTGGTGCTCCTACAGAAAGATATAAAAATGCACACATCACAAACCAGGCAGACTTTGAGATCAGGGAGAAACTCGACGCCGGAGATGAATTCCTCCAACAGAAACGATTAAAAGACGGCCGAATAATCTTTGAGCAGCTTCTTTCGCTACATCCACAAAGTCCACGAGCCACGTATGGGCGGGCATTTGCACTAGACCTGGAAGCGGAAGAATACAAGAGCAACGCTTTGCTGGAGCAAGCCATCACGGAGTACCAGCGAGTGCTCGACTTGCCAGATGTGCCCAAGGCGCTTTTCATACAGACGGGGCGCAAGTGTGCAGGAAGACAGTCGTTCCGGGGTTGGGCAAACCGTGCGGTGAAGACAATGAAGAAAGTAGTCGCCATCTTCCCAGACGAACTGGACCTGTGGAATGAACTGGGAGTAACGTATCTGATCCGAGGGAGTAACGAGGAGGCGCGGGAAGCCTTCCACCAGGTGCTTCGACATCGGCCTGACGACGGCTTTGCTCAAGTTCACCTGGGGTTCATCATTAAGGTGGTTGATCGTAAATACAATGAAAGCATCCCCTACCTCCAGAACGGCATTGACAGTGGCGTGCCAGGCACAATTGACGGCAGGTTCTTTACACACCTCGGTGACGCCCTCTACAGGGTGGGACGACGTGTGGAGGCCCAGAAAGTGTACGATCTTGGGTCTAAAAAGGGCGTGTTCTTGTCACCATATCAACGCTCGCTGCATAATGTGGACCGACTCACTGCACGCCCCTGGTGGACAACTAAGGAAACTGGAGTGGAGAAACAACTACAAATGTTGGCAGAGAACTGGAAGGTGATTCGAGACGAGGGGTTGGCCCAGCTGAATGACACGACTGGGGTATTTCAGCTAGAGACAGAAGACCTGCGAGAAAATGGGGAATGGCGACAATTAACCCTCTATAGACAGGGTCGCAAAGTACCAGAGAACTGTCGGAAGACTCCCAAGACTTGTGAGCTACTTGACCAGTTCCCAGAAGCTACGGACTGTACGCGTGGTCAGATCAAGTACTCTGTGATGCATCCTGGGATACATGTGTGGCCTCACTGTGGTCCGACCAACTGTCGTATCCGTGCCCACCTTGGCCTTGTGGTTCCCCCAGGACTGAAGATACGTGTGATAGACGACACGAGGTCTTGGACAGAAGGAAAGTTCATAGTTTTTGACGACTCGTTCGACCATGAAGTCTGGCATGAAGGCAACTCTCTGCGTCTTATTCTCATTGTTGACATCTGGCACCCGGAATTGTCAGCCAGAGAGAAGGCCACATTGCCTCCCATTTAG

Transcript

RPACG24013.1

ATTTTGTTGATTTTTCGATTGTGACAGGGATACCAAAGCCATTTTTATTTTTAAGGCGGAGACGATTCGTTTCACACAGTGTTACTTAGTGTTGATGCAACGAGCGGCAACGTGTCAGAGCGTCTCGGTGTCGATACACCGCGGGACAACGTGTTGTTTAACGCGCTGTCACTTTTGCAGTTTGCCTGGCTTTGGTTAGAGTTGGACTCGAGTCGGGTGTCCTACTCGGTATCTAGACTAGAACGGTCCATGTTTTAGGTTAGTTTTAGACTACTAGCAAAGATGGGTAGTAATACCAGAAGAAGAAATGCCGCTAAAAATAACCGACATAAAGTTAATAACCGCCAAGAAGTCAGCAACCAAACCCAGACACAAGGCGACAACTCGGTTCAAGATGTAAATCTGGACAAGTCTAGGAAAGTCAACCGTCCCACTTTGACAAAGAAAGCAGCAAAGCAAAGGTGTGGAAACTGCTGTGTGGTCGTGGTTGTGCTTCTGTGTGTACTCGCCACTTCAGCCGTGTACGTGTACAACTATGTAGACACGGCGCCTTTGATAGCTCCACTGAGAGAACAAACCAGAGTTTGGATAGATATTCTGCAGCGAGACTTTGAATCCGTAAGGAAGAGCTTCTTTGGAGAGACCCCAACATCAAAGGATACGGAGACCGGAAGAGAAGAAACTAAAGATGCGAGAACAAAAGATGGAACCTCCACTGATGGTGACACAAGATCTGGAGAGGATGATGATGATGGTCTGACTACGGAGCCAGCAGCTGGACAAGATGCAGCTGGACATGAAGAAGCTGATGAGGTACCTAAGAAGGATGAGGAGACAGTAAAGGATGCAGATAGAGGAGTTGATGGTGAAGTGGATGCGGATGATGCAACGTCTGAGAAGACCCGGGGACAGAGGAGTGCCGCGTCACAGGACAACGAAGACTCACATGTACATGAAAAAAAGGCTGACACACACACAACAGAGTCACCTAGTGCAGAAGGTAGTGAACTAAAATCTGAGCCACCTAGTGATACTGTTGAAAAGACTGAACAGGAAACAGAGCCACCTAGTGAGACAGTTGAAAAGAGTGAACAGGAAACAGAGCCACCTAGTGAGACCGTTGAAAAGATTGAACAAGAAACAGAGCCACCTAGTGAGACAATTGAAAAGACTGAACAAGAAACAGAGCCACCTAATGAGACAATTGAAAAGACTGAACAAGAAACAGAGCCACCTAGTGAGACAATTGAAAAGACTGAACAAGAAACAGAACCACCTAGTGAGAGTGTTGAAAAGAGTGAACAGGAAACAGAGCCACCTAGTGAGACAGTTGAAAAGACTGAACAAGAAACAGAGACACCTAGTGAGACAATTGAAAAGACTGAACAAAAAACAGAGCGACCTAGTGAGACCGTTGAAAAGACTGAACAAGAAATAGAGCCACCTAGTGAGACAGTTGAAAAGACTGAACAAGAAACAGAGCCACCTAGTGATGACATTGACCTTTCGGAAGAAAGAGAACCATCTACTGATGATACCGACATTTTTGATGAAGACGGAGAGCCACCAAGTGACAACATTGACGATTTTGACGAGGAAGAAGAGTCACCTAGTGACAACATTGACGATTTTGATGAGGAAGGAGAGTCACCTAGTGACAACATTGACGATTTTGATGAGGAAGGAGAGTCACCTAGTGACAACATTGACGATTTTGACAAGGAGGGAGAGTCACCTAGTGACAACATTGACAATTTTGACAAGGAAGGAGAGTCACCTAGTGACAACATTGACAATTTTGACAAGGAAGGAGAGTCACCTAGTGACAACATTGATGATTTTGACAAGGAAGGAGAGTCACCTAGTGACAACATTGACGATTTTGACGAGGAAGGAGAGTCACCTAGTGACAACATTGACGATTTTGACGAGGAAGGAGAGCCACCTAGTGACAACATTGAAGAATTTGATGAGGGAGGAGAGCCACCTAGTGACGACATTGAAGATTTTGACGAGGAAGGAGAACCACATAAAGATGACATTGAAGATTTTGATGAGGAAAGAGAGCCACCTAGCGACAAAATTGAAGATTTTGACAAGAAAGGAGAGCCACCTAGTGACAACATTGAACCGTCAGAGCAGACGACAGTGCCACACAGTGGTGAAGAGACGTACAAAATACCTGAGGATAAAACTGAACATTCAACGGACACAGCTGATGAGAAGGAGTTTGTCAGAGATGATAAACGTGACCAAACTGCACACCCACCTGGTGGCAAATCTGTGAAACAGGAGACAGAGAGTGCAACGGTTGATTCAAAAGAAGAAATGGCTAAATCTGGTGCTCCTACAGAAAGATATAAAAATGCACACATCACAAACCAGGCAGACTTTGAGATCAGGGAGAAACTCGACGCCGGAGATGAATTCCTCCAACAGAAACGATTAAAAGACGGCCGAATAATCTTTGAGCAGCTTCTTTCGCTACATCCACAAAGTCCACGAGCCACGTATGGGCGGGCATTTGCACTAGACCTGGAAGCGGAAGAATACAAGAGCAACGCTTTGCTGGAGCAAGCCATCACGGAGTACCAGCGAGTGCTCGACTTGCCAGATGTGCCCAAGGCGCTTTTCATACAGACGGGGCGCAAGTGTGCAGGAAGACAGTCGTTCCGGGGTTGGGCAAACCGTGCGGTGAAGACAATGAAGAAAGTAGTCGCCATCTTCCCAGACGAACTGGACCTGTGGAATGAACTGGGAGTAACGTATCTGATCCGAGGGAGTAACGAGGAGGCGCGGGAAGCCTTCCACCAGGTGCTTCGACATCGGCCTGACGACGGCTTTGCTCAAGTTCACCTGGGGTTCATCATTAAGGTGGTTGATCGTAAATACAATGAAAGCATCCCCTACCTCCAGAACGGCATTGACAGTGGCGTGCCAGGCACAATTGACGGCAGGTTCTTTACACACCTCGGTGACGCCCTCTACAGGGTGGGACGACGTGTGGAGGCCCAGAAAGTGTACGATCTTGGGTCTAAAAAGGGCGTGTTCTTGTCACCATATCAACGCTCGCTGCATAATGTGGACCGACTCACTGCACGCCCCTGGTGGACAACTAAGGAAACTGGAGTGGAGAAACAACTACAAATGTTGGCAGAGAACTGGAAGGTGATTCGAGACGAGGGGTTGGCCCAGCTGAATGACACGACTGGGGTATTTCAGCTAGAGACAGAAGACCTGCGAGAAAATGGGGAATGGCGACAATTAACCCTCTATAGACAGGGTCGCAAAGTACCAGAGAACTGTCGGAAGACTCCCAAGACTTGTGAGCTACTTGACCAGTTCCCAGAAGCTACGGACTGTACGCGTGGTCAGATCAAGTACTCTGTGATGCATCCTGGGATACATGTGTGGCCTCACTGTGGTCCGACCAACTGTCGTATCCGTGCCCACCTTGGCCTTGTGGTTCCCCCAGGACTGAAGATACGTGTGATAGACGACACGAGGTCTTGGACAGAAGGAAAGTTCATAGTTTTTGACGACTCGTTCGACCATGAAGTCTGGCATGAAGGCAACTCTCTGCGTCTTATTCTCATTGTTGACATCTGGCACCCGGAATTGTCAGCCAGAGAGAAGGCCACATTGCCTCCCATTTAGGGCTTCATTGCCTCCCATTTAGGGCTTCATTGCCTCCCATTTAGGGCTTCATTGCCTCCCATTTAGGGCTTCATTGTCTACCATTTAGGGCTTAATTGCCTCCCATTTATGGCTTCATTGCCTCCCATTTAGGGCTTCATTGCCTCCCTTTTAGGGCTTCATTGCTGCCCAGCAGGGATATGTTCCAGTCCATATCATCCAGTGTTGTCATGGTTGTTTTACCAGGGTATGGAAATTGTTGTTTTTATCAGAGAAATGCATTTGTTTACTTAGGAATGTTGGTTTGTCTACGTGCCCTGTTGCACATTACTAAGCGGTGATGGAAGTACACCAAGACAGGAAGACAGGGTATAGGCTGAAACATAAACAGTCTGAAGATGCTTTAAATGAGATCGTCTATGAGGAAATATAAATATGATTTCATGAAACTAAAGAAGAATTTCATAAAAACTTAACTAAGCTAACAGAGTTTTGATAGAACTTCTTAAGACATTTTAAATTTCATTTAACTGAAGTAACTTTAGTCTGAAAGTTATATTTTGACAGTTATGATACAGAGTGTATACCGTTGAATGACCTGCTTTTTAAAACAAAATGGTGCATGTTGACCACTAGAAAATAATTATATATTTGGGAATGTTTGAGCAAACATTTATTGTTGCATTGAATTTCGTGTGGTATGAGGGTTTTGATTGGTTAAACGTTTGGTTTTAAAAGGTCTTGGATGTACTTTGTTCACAGCTAAACACCTTGGAAAAGGTGATATATCTGATATGTTAATTGAACGTTTGTTTGCTTTCATATACTGAATATACATTTGTGGCTGTTCCGTGTAATATCTGACACAAGACTCTGAAATACATGTTGAAGACAGTCGTGCATATGAATTGTTCACCTCAATAACTGTCATGGTCTGTGCACACCTCTGTTTGAATGACATTTGTGTCTCGATCTAGCTATGCATAACGCAATGTAAATCAGTTACATGATTAGTTTTTTTATCAAGTGCAACAGTTGGATTTATTTCTACTGTTATGCCCGGTGCATGTCTGGATTCTTGTATTTCTCAGTGATGTGTAAATATGTGTATGCATGTTTGTGTCCACGTGGTCATGCAAGCTCTCCTGACCTGACTAAATATGCAACTACAGTGCGTATATATTAAGAACACTCGAGGTCATTGAAATGTATATGCATTTTTGTAATCATAATGCGTGGATCCTTTGCACAAATAACCAATACCAGGTTATTTGTCCGTGTGTGTATGAATGTAACCCCCACACTTCAACCCGTGTCCCCATCAAGACACCCCAAACTCTACAGCTGCGCCCCTCGCTGAGTAGCACACTTGCTTAGACGAAGTGGGGGAGGGGTTTGTACGATGTTGTCTTAGCAACAGTTGTCATGTTAATGCCATATCTTAGCAACCAGTGAAAATGTGTTATTTTAATGAGTTGTCTTTGCAAACACCATGGCAGTGGTTTGTCTGCGGCGGCAACCACAATGTATGTGGGTCAGTAAGGTCTGTCGCCTGTCCCGTCTGTCGTGCCAGTATACGTAGATGGCAAGTCACGTGACGTGTCTCCTGGTGTCGTCATAAATACTTGCCATGTTTGTGTGTAGTTGTATAACTGTAGTGTTGATATGTTTAATTCACCAAAGGTACTTAATGCTTATATTTAGACCAAGCAAGTGAAAGCATGTGTGTGTATATGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTGCGTGATCATGATTTTATTAAGTATTCATGATCAACTGCATAAAGGGTAATGAATATGTTACTAGTAGAATATAGTAAAACATAGAAATATGTACTTACGCAACCCACATGTAATATCATTAATCACATAGTAACAATAATTTGTATAAATGACATTACAAATAACGATTTTAAATATGAAGTGTAAATAAGCAGATAAACAAAGAAGCCTTAGTGAGACAGTCGGGGCACTGATCTCACCAGCGGCATAGTTAAACGGAGTGTTCGTACGATATTATGACGTTACATATGGCTTTACATTTGTTAGCCACGGGGCTGTTGGCAGGCCGTGTGTTGGTGGTTGCTACCTGCTCAAAAGCTGTGCATTACGTCACACAGGGAAATCTGTTGCCGTCCAGTGTACCTTTAGACGATCTTTCCGTCTGTCTAGGTTCAGCAGTTTAGTCGTGGGTGCTATGTTGGCCTTCATACGTGATATGATGGCGAGGTTTGTCTGGCTACGTATGCCTCTTTTGTGGTTCTTACATAGATTTTCTTTCTGAGTTGTTTAAGTTGATGCCTATCTGGTTACCAGTTTGCTATGAAATGCAGTGCGTGTCATTGATGCTGCATCTGCGTGTTCAACACATCAGAGACTGTGTAGCTGATATAATAAAATAGCAAAAAAACCAAATGACATGTTCTTTAAAATTTTAGTTCGCCCGATTTACATGGCATACGTTTCTCGGATTTAAGACTAGTTCATTGTTTTTATTTTACAGGTGTCAACGCAATAAAATTATTAATTTATAATGTGGCGTTTTTCCTTCAGTCGTTTACCTTTGGAACGTTTGCGACAACTTATTGTACGGCATTAATGACATGTTGAACACGTGTTGCGACTAAACTGCCGCAATGCAGTAGTAGACTGTTGTAACAATTGTCTGACTTCATAGAACAATTATTTTAGACATATTTGAAAATATGTAATAGAATTAAGTATTGCTATGTGGTAATGTGATAACAAAATAGCAATGAATGGTAGCATGGACGCCTCGTTGCTGCGTTACGTATTGTCACGAAAATGGCGTCATTTACGGCGTGCTGTGACGTCGTCGTGTGAATAAACAAATATTGACTACCAAAGCTAGACATTTTTATTCCACGTTTTACGAGCCCGCGACATTGATTTCCTGTATGTCGACTAAAAATAAAATTCTGAATTCGTGTG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01392	Fz	Fz domain	Domain	Interproscan
PF01759	NTR	UNC-6/NTR/C345C module	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001134	Domain	Netrin domain	Interproscan
IPR008993	Homologous_superfamily	Tissue inhibitor of metalloproteinases-like, OB-fold	Interproscan
IPR015526	Family	Frizzled/secreted frizzled-related protein	Interproscan
IPR018933	Domain	Netrin module, non-TIMP type	Interproscan
IPR020067	Domain	Frizzled domain	Interproscan
IPR036790	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309	FRIZZLED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0016021	Cellular Component	membrane	Interproscan
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG24013.1 global RNA-seq network