Gene detail

Detailed information of RPACG23879.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG23879.1	SERINE/ARGININE RICH SPLICING FACTOR	tig00035471	173094	197899	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG23879.1

ATGGCAAACGTTCGATGGCTGCTTGTGTGCCTGCTGCTGTTTGTGCTCCGTGTGGGCTTGGAGCCGGTCGGAGCAAGCGCCATCGGCGACCGAGCGCGCCGTGCGGTCAACGAGTCTACGGACGCCGTGGCAGACCCGGGGGCCGGGGAGTCGACAGCGGGGAACGAGACGGGAGAGAGCGATGGCGCGGGGGAGACAGAGGGCGAAGGAGAATTGCGATACAGCGTCGCCAAGTTTGACTTCGGTCACGTCGCTGGTCCTCTGGTCGTCACCGGCTGGATTCTACTGGCCAGCATCGCCAAAATAGGCTTCCACCTGAACCACAAGTTGTCATCCATCTTCCCGGAGAGCTGCCTCCTCATCCTCCTAGGCGTCCTCCTCGGCCTCATCCTCTACTTTGCTAAAATCGATGGCTATGCCCTCAAGTCAGACACCTTCTTTCTCTACCTCCTTCCTCCGATCATCCTCGACTCCGGATACTTCATGCCCTATCGTACGTTCTTCGACAACCTCGGCTCAATCCTACTCTTTGCAATCGTCGGGACAATATACAACACCATTGCCATCGGGCTGTCGGTGTGGGGGAGTTCGGCTGCGGGGTTGGCCCTCTTCCCTATCCCCTTGAAGGTGTTGCACTGCCTCGTGTTTGCGTCGTTGCTGTCTGCCGTTGATCCAGTCGCCGTACTCGCTGTCTTTGAGGAGGTTCACGTGAATGAAGTGCTGCACATTGTGCTCTTTGGGGAGTCACTGCTCAATGATGGTGTCAGCGTGGTACTCTATCACATGTTTGAGACGTACAGCGAGATAAAGCTCGAGAACATCATCATCCTTGACATAGTGGCTGGCATCGCGTCTTTCTTCGTAGTTGCCATTGGGGCCACCCTAATTGGGGTCCTCTATGGCCTCCTCGCAGGATTTATCTCCCGCTTTACGGAGGAAGTCCGTGTCATCGAGCCTCTGCTTGTCTTCGTCATGGGCTACTTGTCATATCTGACATCAGAGTCCCTCCACTTGTCCGGAATCTTGGCGTGTACGTTCTGTGGAATGGTGATGCGACAGTTCGTTGAGGCGAATGTTTCACCCAAGTCTCGTACAACCATCAAGTACTTCATGAAGATGTTGGCGTCCATCTGTGAGACCATCATCTTTGTGCTGCTGGGCATCTCGACTGTGGTGAACAACCACCACTGGGACACAGCCTTCGTCTTCCTTGTCGTTGCCTTCTGTCTCATCTACAGGATTCTAGGTGTGATAGTGCTGTCGTTCCTGGCCAATCGGGTGAGAGTCGATCAACTCTGCAATGTGGACCAGTTCATCATGGCATATGGAGGACTGCGGGGGGCCATTGCCTTCTCTCTTGTCTCCCTTCTCGATGAGGAAACCTTCCCCAACAAACGCCTCTTCCTCACCACGACCATCGTAGTTGTCTACTTCACTGTCTTCTTACTTGGGTCAACCATTAAACCCCTGGTGAACGTGCTGCGGGTGAAGAAGGGCGACAGCCATAAGCAGACGATGAACGAACGCATTCATGTTCGGGCTATTGACCACTTGATGGCTGGAATTGAAGACATCACAGGCCACGTTGGCCCAAATGAACTACGAGAAAAGTTCCACTACCTGAGCAACAAGTTTGTGAAGCCTCTGCTACTCAAGAAGGGTCACTCGGGACGGGGTGAGTCGCTGATGAAGGTCTATCAGAGGCTGACGGAGATAGAGATGCGGCAGATGGTCAAGACAAGCTCGTACACAATGCTCTCTCAGATGCACGTCACACCCTCTACCAGTCAGTCTCTTGCCAAGTACTTCGACACGCACTACGCCTCGTCTGCCAACATAGCTGAATCCCAGAATGGCATGGTAGATTTGAAGTCGGTGGGTGTGCAGGACTCGCGGCGTATGCGGGACGAGGGACTGGTGCATCACATGATTGAGGACGTCATGTTTAAACCTCGCAAACGGTTCTGTCAACAAAGTCACCACATGCTGCCGGACATGGATGGCCGCTTCATGTTTCCACACATGGCTCGACACAACCTGCGCCACGCAGCCGCTCGTGAACGAAGCCGCAGTCAGCAGAAGTTGGCCCTGGATGGCAAGAAGAAGAAGAAGAACGTAGGATTTGCAGCCGATTCTGATGACGAAGATGTGCAAAAGAAGAAGAACATCTTGGACAAAGGAATTACCTTCACTGTTAACGGCGACTCCTTAGATGGAATAGAAAACATCGGTTATGAACAAACGGAAGCTGAAAGTGCATTGCCATGGAAACGAAATGAGATGGACGTGGAGCCCGAGTTATCTCGGTTGTCCCGTATGACAGGAACTGAGGAGACACGGTCAAACTGGAGCACACCACAGAAGTACCTTGATGACATTGCTTCTACAGGAAGTGATGTTGCATCTACAGGAAGTGACCCCTTTCCTGCACAATATGACCCTGCTGCTACAGGAAGTGACCCCTTCACTACAGGAAGTGACATAGCCAACACTTCCCATGGTGCATCAGCAGCACCTGATGATGATGGAGCAGCAGGAATGGACAGTGATGAAATTAAAACATCTAAGGTGTAA

Transcript

RPACG23879.1

TGGCAGGCCAGTCGCGGTGAGCTGTAAGCGACGTTTAGGTCGAGCTGTCCCCGCAACCTTGTGCGGCCTTGCCATTGCATTGACTGCGTCGGACGCCAAGAGATATGAACGCGACGACGGCAACGACACATCCATGATGGCAAACGTTCGATGGCTGCTTGTGTGCCTGCTGCTGTTTGTGCTCCGTGTGGGCTTGGAGCCGGTCGGAGCAAGCGCCATCGGCGACCGAGCGCGCCGTGCGGTCAACGAGTCTACGGACGCCGTGGCAGACCCGGGGGCCGGGGAGTCGACAGCGGGGAACGAGACGGGAGAGAGCGATGGCGCGGGGGAGACAGAGGGCGAAGGAGAATTGCGATACAGCGTCGCCAAGTTTGACTTCGGTCACGTCGCTGGTCCTCTGGTCGTCACCGGCTGGATTCTACTGGCCAGCATCGCCAAAATAGGCTTCCACCTGAACCACAAGTTGTCATCCATCTTCCCGGAGAGCTGCCTCCTCATCCTCCTAGGCGTCCTCCTCGGCCTCATCCTCTACTTTGCTAAAATCGATGGCTATGCCCTCAAGTCAGACACCTTCTTTCTCTACCTCCTTCCTCCGATCATCCTCGACTCCGGATACTTCATGCCCTATCGTACGTTCTTCGACAACCTCGGCTCAATCCTACTCTTTGCAATCGTCGGGACAATATACAACACCATTGCCATCGGGCTGTCGGTGTGGGGGAGTTCGGCTGCGGGGTTGGCCCTCTTCCCTATCCCCTTGAAGGTGTTGCACTGCCTCGTGTTTGCGTCGTTGCTGTCTGCCGTTGATCCAGTCGCCGTACTCGCTGTCTTTGAGGAGGTTCACGTGAATGAAGTGCTGCACATTGTGCTCTTTGGGGAGTCACTGCTCAATGATGGTGTCAGCGTGGTACTCTATCACATGTTTGAGACGTACAGCGAGATAAAGCTCGAGAACATCATCATCCTTGACATAGTGGCTGGCATCGCGTCTTTCTTCGTAGTTGCCATTGGGGCCACCCTAATTGGGGTCCTCTATGGCCTCCTCGCAGGATTTATCTCCCGCTTTACGGAGGAAGTCCGTGTCATCGAGCCTCTGCTTGTCTTCGTCATGGGCTACTTGTCATATCTGACATCAGAGTCCCTCCACTTGTCCGGAATCTTGGCGTGTACGTTCTGTGGAATGGTGATGCGACAGTTCGTTGAGGCGAATGTTTCACCCAAGTCTCGTACAACCATCAAGTACTTCATGAAGATGTTGGCGTCCATCTGTGAGACCATCATCTTTGTGCTGCTGGGCATCTCGACTGTGGTGAACAACCACCACTGGGACACAGCCTTCGTCTTCCTTGTCGTTGCCTTCTGTCTCATCTACAGGATTCTAGGTGTGATAGTGCTGTCGTTCCTGGCCAATCGGGTGAGAGTCGATCAACTCTGCAATGTGGACCAGTTCATCATGGCATATGGAGGACTGCGGGGGGCCATTGCCTTCTCTCTTGTCTCCCTTCTCGATGAGGAAACCTTCCCCAACAAACGCCTCTTCCTCACCACGACCATCGTAGTTGTCTACTTCACTGTCTTCTTACTTGGGTCAACCATTAAACCCCTGGTGAACGTGCTGCGGGTGAAGAAGGGCGACAGCCATAAGCAGACGATGAACGAACGCATTCATGTTCGGGCTATTGACCACTTGATGGCTGGAATTGAAGACATCACAGGCCACGTTGGCCCAAATGAACTACGAGAAAAGTTCCACTACCTGAGCAACAAGTTTGTGAAGCCTCTGCTACTCAAGAAGGGTCACTCGGGACGGGGTGAGTCGCTGATGAAGGTCTATCAGAGGCTGACGGAGATAGAGATGCGGCAGATGGTCAAGACAAGCTCGTACACAATGCTCTCTCAGATGCACGTCACACCCTCTACCAGTCAGTCTCTTGCCAAGTACTTCGACACGCACTACGCCTCGTCTGCCAACATAGCTGAATCCCAGAATGGCATGGTAGATTTGAAGTCGGTGGGTGTGCAGGACTCGCGGCGTATGCGGGACGAGGGACTGGTGCATCACATGATTGAGGACGTCATGTTTAAACCTCGCAAACGGTTCTGTCAACAAAGTCACCACATGCTGCCGGACATGGATGGCCGCTTCATGTTTCCACACATGGCTCGACACAACCTGCGCCACGCAGCCGCTCGTGAACGAAGCCGCAGTCAGCAGAAGTTGGCCCTGGATGGCAAGAAGAAGAAGAAGAACGTAGGATTTGCAGCCGATTCTGATGACGAAGATGTGCAAAAGAAGAAGAACATCTTGGACAAAGGAATTACCTTCACTGTTAACGGCGACTCCTTAGATGGAATAGAAAACATCGGTTATGAACAAACGGAAGCTGAAAGTGCATTGCCATGGAAACGAAATGAGATGGACGTGGAGCCCGAGTTATCTCGGTTGTCCCGTATGACAGGAACTGAGGAGACACGGTCAAACTGGAGCACACCACAGAAGTACCTTGATGACATTGCTTCTACAGGAAGTGATGTTGCATCTACAGGAAGTGACCCCTTTCCTGCACAATATGACCCTGCTGCTACAGGAAGTGACCCCTTCACTACAGGAAGTGACATAGCCAACACTTCCCATGGTGCATCAGCAGCACCTGATGATGATGGAGCAGCAGGAATGGACAGTGATGAAATTAAAACATCTAAGGTGTAACTGGGGTGGTCAGAAGTGCTCTATGTATTTATACAAATGCCATAGGAGAACATTTCTTAATTTTTTTTACTGCAAAGCCTTATGTACATAATTCACTTTATTACAGCATTTCAGGGTTTCAATTTAGTTCACTGGTGTGAATTGAAATGATAGTTTATGCTAATGGTATATTTGATCTTGATTACTCAGATACAATTGGCAACAGTGAAGGAAGCTGTCTGGTATGTAGATTGATTCATTAGGAATTGACACTGTTGCAGGAACAAAGGTGGACAGCTTGATTTAAACAATGACACCATAATCTTAGATTTAAATATTTCTTTAAATCAATTCACCATAGATTTTTTCATAAATACAGATTTCAATCTTTATTTAGGTCTATGACATAATATTTCTTCAAATGAATGAAAATTAAAAAACTTAGAAGTATTCTAGCGTTACATAATCTCATTTCAATTGATCTACTCGGGTGTATAAATCTTTCTAAGAACAATGTTTTCATTAAATGATGTTTTATTCTTACACATAATTATATATATATGTGTGTGTGTTTGTGTGTGTATATATAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCATG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR050907	Family	Serine/Arginine-Rich Splicing Factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG23879.1 global RNA-seq network