Detailed information of RPACG23718.1 in Riftia pachyptila Gene info
Gene IDAnnotationContigStartEndStrand
RPACG23718.1SARCOSINE DEHYDROGENASE-RELATEDtig0003546923452022352613-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01266DAOFAD dependent oxidoreductaseDomainInterproscan
PF01571GCV_TAminomethyltransferase folate-binding domainDomainInterproscan
PF08669GCV_T_CGlycine cleavage T-protein C-terminal barrel domainDomainInterproscan
PF16350FAO_MFAD dependent oxidoreductase central domainFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR006076DomainFAD dependent oxidoreductaseInterproscan
IPR006222DomainAminomethyltransferase, folate-binding domainInterproscan
IPR013977DomainGlycine cleavage T-protein, C-terminal barrel domainInterproscan
IPR027266Homologous_superfamilyGTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1Interproscan
IPR029043Homologous_superfamilyGlycine cleavage T-protein/YgfZ, C-terminalInterproscan
IPR032503DomainFAD dependent oxidoreductase, central domainInterproscan
IPR036188Homologous_superfamilyFAD/NAD(P)-binding domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR13847SARCOSINE DEHYDROGENASE-RELATEDInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0005739Cellular ComponentmitochondrionInterproscan
GO:0005759Cellular Componentmitochondrial matrixInterproscan
GO:0008480Molecular Functionsarcosine dehydrogenase activityInterproscan
GO:0016491Molecular Functionoxidoreductase activityInterproscan
GO:1901053Biological Processsarcosine catabolic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for RPACG23718.1 global RNA-seq network
TOP