Detailed information of RPACG23703.1 in Riftia pachyptila Gene info
Gene IDAnnotationContigStartEndStrand
RPACG23703.1NOTCH LIGAND FAMILY MEMBERtig0003546921869172187673-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00008EGFEGF-like domainDomainInterproscan
PF00066NotchLNR domainDomainInterproscan
PF06816NODNOTCH proteinFamilyInterproscan
PF07645EGF_CACalcium-binding EGF domainDomainInterproscan
PF07974EGF_2EGF-like domainDomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF12796Ank_2Ankyrin repeats (3 copies)RepeatInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR000800DomainNotch domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR002110RepeatAnkyrin repeatInterproscan
IPR008297FamilyNotchInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR010660DomainNotch, NOD domainInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR013111DomainEGF-like domain, extracellularInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR024600DomainNotch, C-terminalInterproscan
IPR035993Homologous_superfamilyNotch-like domain superfamilyInterproscan
IPR036770Homologous_superfamilyAnkyrin repeat-containing domain superfamilyInterproscan
IPR049883DomainNOTCH1 EGF-like calcium-binding domainInterproscan
IPR050906FamilyNotch signaling pathwayInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24044NOTCH LIGAND FAMILY MEMBERInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005112Molecular FunctionNotch bindingInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007219Biological ProcessNotch signaling pathwayInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0050793Biological Processregulation of developmental processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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Expression pattern
 1. Expression trend for RPACG23703.1 global RNA-seq network
TOP