Gene detail

Detailed information of RPACG23558.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG23558.1	NEGATIVE ELONGATION FACTOR E	tig00035469	26868	32731	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG23558.1

CGGACGTGAAAGTGTGTAACTGGTGATTCTTCGCGTACTTTGATAAGTGAAGCATACACAATAACTTTCGAAAAGGCACGAGAGCGTGGGAATAAGAAACCGCTTTCGGGCCAAAAATCTTGGATTATAAGAGTCATGGAAGGCGCAGCGACCGAGCGTGATTAGCGTTTGACACCTGGACACTCGAGCAGGAATACAAGATGATGTGTGTTGTTGATGCGTTTTGTGGTTTTCTAAAATTGAATGGACCATTGTTTTATTGTCATTGTCGCCTTTGAATGGATTGATCTTAATCTCTCGGGTCATATTTTCAATGTGGTTCAGCTAGCCGGGGTAGCTTTATTGTGCCACTGTCACTGTGTCAACCGTCGTTCAATAATTGGTGGGTGTGCACCCGGCTAATCCTGGTCGTGAGCATGGCGAATTCCGATATGAATCCTGTGATCCCACCCCGACCCGATGTATCTTTCGTTGGTGTAACACCAAATACCCACACAACCCCAGAACGAGGTCATCACAGCCGAACATCTGGCAGGCGTGAGCCGGCTCCCGTGTCTCCCCACGGCCATACTATGGACGTCAGTGACTGGGAGACGAGGGAAGAGATGCGGGTGCAAGAGTTGGAGGAGGCACGCAGTCGTGTTGCACAGATGGAGAAGACAATGCGCTGGTGGTCCGATTGTACAGCAAATTGGCGTGAGAAGTGGAGTAAGGTTCGCAACGAGCGCAACAAAGCACGTGACGAATGCAAACATTTGCGTATGAAGCTAGAGAAGAGTGTCAAGGAATGTATCCTGTTGAAACAATTTAGTGCAGAGTTGGAGGCATCACGCAAACGCAAGGATGGTGGTGTAAATAACGACAGCGGTCAAACGTTTATGTGTAGCTGTGGAGGTCAACGCTCAGGAGGAGGTGACCAAGAAAATGCTGCCAAAGCAACAAAATCACCTGAAAACAAATCTGGTGAAGACTTTGTGAGTAAACTGCTGTCAAAGAAGGAAACTGATGCGGACAGTTTAAGTAGTCATTCAGGTAAATCAAGTCTAAAGAAGGGTTCACCATCATCTGGAACAGAAAAATTTGAAGATGTTGCATTACAGCAGAAAGTGTCAATGCTTGAGAAGAAGTTGGAGGAATCACAAAAAAGTACACAACATGAACGGCATGAGAAAGAGAATCTAACTGAGTCACTGGCCAAGCTTCAGAGTAAGCTGGAAGAAGCAAGGTCTGCCAAGAAAATCGGTGAAGAACAGCTGCAGAAAGTGCAGGAGGACCACCGGGATGAAGTCGACAGAATAACAGCTGAGCTGGATGATGAGACCGACTCTCGGTGCAACCTCGAGAAAACAGTTGCTGATCTGCGCAAGGAGTTGGAGCGACTTCAGGCGGAAAACGCGTACGAGTGGGGGAAGAGCGAGAGTCTGGAGACAGAGAAACTTGCCCTGGAGAGGGAGACAAAGAAGCTTCACGCAGAGGTGTCTGTGCTGCAGGAAGAGTTGGAGCGCAAGAGTCGACAGGCATCCTCACAGCTCGACGGAGACATGAAGAGTCTGCAGAGGGAGCTCACCGACAAGACCAGGGAATTGAATGACATGAAGCATGCCCACGGTAAGCTAAAGAAGCTGCTACAAGACAAGACAGCAGAGCTTGACCACGCCACCAGCAGGGCTGACCAGTATGAGCAGGAGGTTAGGAAACTACGCAGCCGCATTGATGAACTGAAGAGAGACCTAGCAAATGCGGAGGATGAGGTGGACCAGCAGACGAACCAGGTGAGGCGCATCCAGCGCAACAACGACGAGTTACAGCAGCAGGTCGAGAACCTCGGACTCCAGGTGACCCATCTACAGACCAGGTTGCGCAGTTCGAGCAAGACGAGGATGGGCTCTCGCAGCGCCAGTCTTAAGTCGTTTGAAGCCAATGAAGGTGGCTCCAGGGAGTCTGTCAGTGACGATAATTAACTGGATGTCTGTCCCATCCCATGTCATCTGGTGTTGATCCGTCTTATAATGTGCACGTCCCCACATTGTATCTGTTCTATCGATCACACGCACGTGCACGCACGCATGCACAAATAGTTAAACCTTTGTTGGTTCCTCAGTTTTATGCCCAAGTAAATATGGTGAAGCTATCAAATTGTGTTTACGAATCCTGACACATCGCAGTTTTATTGTTGCATCTGGGAAACATCTAATAGTAAGCCCCAAACATTGTTTGCAATTTGATGTGAAACATAATGTTATGCACCTACTTGAGAAATAAAACTGCAGGCAAGGTAAGCTGCAAGAACATATAATGTTGGGCTAATTTGCATAGCTTCCAAAATTCAAGAAGCAATAATTTAGTGAACTTCCTGCTAATAATTTTGGTCTCTGTCGTAGGTGGATGGACAAGACAAGATTTCCTTAGTAATTGTAATTCATATAACAATGAAACTAGTGCTCAGCCTTCCTAAATATAGCCTTTCACATCGGCGTGTTGTCAAGTAGAGTAAATGTACACATAATATATTGGGATTATGATTCTCATGACTCTAAATAGCTTTAGTGACATTGTTTTATAACAGACCACATATATTAGACCACATCGCAACACTGGCATTCAGATCAGTTCTTTGAATAACCTTAACTGTAAAATAACAGCTGTAGCTACCCCAGGTAATGAAAATGGTTACCCTATCAGTGGTATGAATACCAAATCAGTGTATTTTCTCCATAGCTATAGCAGAAGGTCAATAATATCAAATGCATCAAACTGGTTTCTCATTTGTGTGTATATTTATCAATTGGTGGTACTTTGTAAATGTCACCTGTTGTGTGTAGTCATTGGGATTGTTTCAGATATTACTGGGTTTAATGCTAGGTTTTATCATTTTGGTATATTTCTACAATTGGACTATGTTTTTGTACAAAAGTACTCGATTATATTTTCTATTTCTCAGTACATTTGGAGTTAATATGTGAAAGGATTGTTTGTGTAATAATATGGTAAATGGTGAAAATTGGAGCCTTGAATCATAATGAGACAACTGATAACCGGTAGCTATGTTTAATGGCTCGATTAGGTGAATTATCAATAAAACCTTTGCCATGGGTTATTACTATAATTATTACCATAATTTCAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR033102	Family	Negative elongation factor E	Interproscan
IPR034637	Domain	Negative elongation factor E, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17250	NEGATIVE ELONGATION FACTOR E	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0032021	Cellular Component	NELF complex	Interproscan
GO:0034244	Biological Process	negative regulation of transcription elongation by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG23558.1 global RNA-seq network