Gene detail

Detailed information of RPACG23184.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG23184.1	VANG-LIKE PROTEIN	tig00035315	203886	217251	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG23184.1

ATGTCTGTCAAAGAGCGGTTCCTGCGTTCGGCGCATGACTGCTGTTACCGGATGTGTCGTCAGAAGCGCCACCAGACGGACACGCCAGGACTGAACACCCCGCGCTACCATACTGTCTACGATCTTCTCAACGTCGGACTAGGCAGTGTCCTTGCTATGGCTGTATACGTCGTGGTCACTCCAGTGACCGCTCTGGTCACTGGACCGTCCATCATAGTGTCCGTTATCGTCGCAGTGGTGGCCGGAATCATGTCAGGTTCTTGTTTTCTCGAAATGAAATGCAGTCTTCCCAAAACATCGTGCGAGGCGTACGAATACACATACTATGTAATGGGTGAAGCGGCAGCGTTCGGTGTCGGTTGGGTGACGCTATTACGTCAGGTGACCGCCGTTTCCGCCACTGCGCGCATCCTCAGCGAAAGCGTCGATTGTCTCCTCGGCGGGAAGATCCTAAACATGACATTGGAGAAAATCGGTGACATCCAGTTTTTGCATAGTCACGTGGATCCGGTGGCGCCACTGATCGCATTCGTCTTCGTTGTCATGGCGACCGTGTGGTTGCGCACGTGGTCACTCTATTTACTGGTTGCGTTGACGAACGTCAATACCCTGGTCGTGGCTGCCATTGCCTTCGTTGTTGTCATCACCAACTCCCGTCTGCACAACTGGGAGGTGTTCACCAGTTTCTTCCCGCACGGTCTCAGTGGGGTTCTCGCTGGTGCCGCCGTCCTTCTTTGCTGCTTCACACACACGGAGGCACAACTGACGTCGACCGACTTCGGCTGTAGGTCGACCAAGTCTTCTGCTGGTGTTGCCGTCACGTTGTGTCATGTCGTCATAGCGACAGTTGTCCTGTCCCTATCTGGCGTCGTCTCGCTAATGTCACCGTTGAAGTGGCCCAAAGAAGCAACGCTGACGGGCCTCGTTGACGTGACGTGGGTCGGCTACCTGATAGGGACGACGGCTTTCCTAGCGCTGGCTCCGTTCCTTCTCAAGAGCTTCGGGCGCGCATTCGATACGCACGATGCAATGGCGTCGGACGGTTTGCTACCGGGAGCTGTTCGCGACGTCAGCGACACCCGACGGCTGCCCGTCGTCGCCGCTCTCTTTGTCGGAGGCCTTGCGGTCATGGCCGCCGCAGTGTTGAGTGTGGTCAATCTGCTACAGCTGCTGGCTTTCTGTACCATCAGTGTACACGTGTTTGTGTGTTTGTCGTTGATTGTTATGCAACACAAGCCAGCCGATCAACTCGGCATTAAGCTGAAGAACCGGTATCTCATTCAGCCTACGATTGGCGACACCTGGCGACCAACAGAAACAACGGTGTCGTACATCGCCGTGTTCTCGTCCGACTACGGCGCAACGCAAATCCGCAATGATGACTCTTACGAAACCGCACCGGACGTGACATCACCATGTGAAGTGTGGCGGACAGACTCGCGCATGTGTCAACTGGCTCCGGAACAATCCCCGTCGCTATCGCCGCAGACGTCGTCGACGACGTCACCGCAGGATCGGCCGTCGACGCCGTCGTCAACGTCATCGTCCGACACGGACATCGACGAAGTGGTCGACGAGTACCAAGAGAGTCAGCGCATCAAACATCGACGTCACTTCCGGGACGCGTTCCCGTCGACGACAACGTACCGCTATAGCGTCGGTGCCACGGCCACGCTATGTCTGTGCAGTGTGTGCGTGGCGCTGGTGGCATGTCGGATCAGTGAGACGGACCTCAGACAACCGCACGCGCTCACCCTGTCGCTGTTTGCGGCGCTCGCGGTTACCATCGGACTGTCGGCCGTCGTCGTCACCGCCATGCCGACCAATAGACTGCCTGCATCGTCAGCTGCCATTGTCGGCACGGCGCGGTCGCGATGGACGCCGCTCGGGTGTGTCTTCGTCCATTTGGTGCTGGTTACCTCGCTGCCGAGCCTCACCTTACTGCAGGCGGCCGGTTGGCTCGCAGTCGGTGCTGCGGTTTACGCGGCGTACGGGGCGTCGCACAGCCGACTGTCTGCCGGGGAGCAGCCGGACGAACACCGCATCCTACTCCTCGCGAGCCGCGTCTCGTCACCGTTGTCGGAAACTAGCCATTCGCCAGGTGGCGCCACCACATAA

Transcript

RPACG23184.1

CAGCCGGGCTCGGTTCGCAAGTCACAGACGACATCAACATCCTGGCAAGCGGTTAACATCACCGGGTGTTGCCGACCGCGACTCTGGGACAGCAACACGCAGGATTGGCCGCCATGTCTGTCAAAGAGCGGTTCCTGCGTTCGGCGCATGACTGCTGTTACCGGATGTGTCGTCAGAAGCGCCACCAGACGGACACGCCAGGACTGAACACCCCGCGCTACCATACTGTCTACGATCTTCTCAACGTCGGACTAGGCAGTGTCCTTGCTATGGCTGTATACGTCGTGGTCACTCCAGTGACCGCTCTGGTCACTGGACCGTCCATCATAGTGTCCGTTATCGTCGCAGTGGTGGCCGGAATCATGTCAGGTTCTTGTTTTCTCGAAATGAAATGCAGTCTTCCCAAAACATCGTGCGAGGCGTACGAATACACATACTATGTAATGGGTGAAGCGGCAGCGTTCGGTGTCGGTTGGGTGACGCTATTACGTCAGGTGACCGCCGTTTCCGCCACTGCGCGCATCCTCAGCGAAAGCGTCGATTGTCTCCTCGGCGGGAAGATCCTAAACATGACATTGGAGAAAATCGGTGACATCCAGTTTTTGCATAGTCACGTGGATCCGGTGGCGCCACTGATCGCATTCGTCTTCGTTGTCATGGCGACCGTGTGGTTGCGCACGTGGTCACTCTATTTACTGGTTGCGTTGACGAACGTCAATACCCTGGTCGTGGCTGCCATTGCCTTCGTTGTTGTCATCACCAACTCCCGTCTGCACAACTGGGAGGTGTTCACCAGTTTCTTCCCGCACGGTCTCAGTGGGGTTCTCGCTGGTGCCGCCGTCCTTCTTTGCTGCTTCACACACACGGAGGCACAACTGACGTCGACCGACTTCGGCTGTAGGTCGACCAAGTCTTCTGCTGGTGTTGCCGTCACGTTGTGTCATGTCGTCATAGCGACAGTTGTCCTGTCCCTATCTGGCGTCGTCTCGCTAATGTCACCGTTGAAGTGGCCCAAAGAAGCAACGCTGACGGGCCTCGTTGACGTGACGTGGGTCGGCTACCTGATAGGGACGACGGCTTTCCTAGCGCTGGCTCCGTTCCTTCTCAAGAGCTTCGGGCGCGCATTCGATACGCACGATGCAATGGCGTCGGACGGTTTGCTACCGGGAGCTGTTCGCGACGTCAGCGACACCCGACGGCTGCCCGTCGTCGCCGCTCTCTTTGTCGGAGGCCTTGCGGTCATGGCCGCCGCAGTGTTGAGTGTGGTCAATCTGCTACAGCTGCTGGCTTTCTGTACCATCAGTGTACACGTGTTTGTGTGTTTGTCGTTGATTGTTATGCAACACAAGCCAGCCGATCAACTCGGCATTAAGCTGAAGAACCGGTATCTCATTCAGCCTACGATTGGCGACACCTGGCGACCAACAGAAACAACGGTGTCGTACATCGCCGTGTTCTCGTCCGACTACGGCGCAACGCAAATCCGCAATGATGACTCTTACGAAACCGCACCGGACGTGACATCACCATGTGAAGTGTGGCGGACAGACTCGCGCATGTGTCAACTGGCTCCGGAACAATCCCCGTCGCTATCGCCGCAGACGTCGTCGACGACGTCACCGCAGGATCGGCCGTCGACGCCGTCGTCAACGTCATCGTCCGACACGGACATCGACGAAGTGGTCGACGAGTACCAAGAGAGTCAGCGCATCAAACATCGACGTCACTTCCGGGACGCGTTCCCGTCGACGACAACGTACCGCTATAGCGTCGGTGCCACGGCCACGCTATGTCTGTGCAGTGTGTGCGTGGCGCTGGTGGCATGTCGGATCAGTGAGACGGACCTCAGACAACCGCACGCGCTCACCCTGTCGCTGTTTGCGGCGCTCGCGGTTACCATCGGACTGTCGGCCGTCGTCGTCACCGCCATGCCGACCAATAGACTGCCTGCATCGTCAGCTGCCATTGTCGGCACGGCGCGGTCGCGATGGACGCCGCTCGGGTGTGTCTTCGTCCATTTGGTGCTGGTTACCTCGCTGCCGAGCCTCACCTTACTGCAGGCGGCCGGTTGGCTCGCAGTCGGTGCTGCGGTTTACGCGGCGTACGGGGCGTCGCACAGCCGACTGTCTGCCGGGGAGCAGCCGGACGAACACCGCATCCTACTCCTCGCGAGCCGCGTCTCGTCACCGTTGTCGGAAACTAGCCATTCGCCAGGTGGCGCCACCACATAACCACAGAACGCGACGTCTGAGCCGCGACGTTCACGCGACGCGCAGTGGAGGCGCCATTTATTTATAAGTTACGGAACGGTGGAGGATAATGCATAACTAGAGTTTCTTACGTAAACCAAGTGCTTTGAGCGGAATATCTGTATAAATATGTAAACAAGAACATCGGAACTGCTGCGAGTGGTGCGACTGGTGAGAGTGTAGGAAGGGGGGATGGTTAAGGTTGCGCAATGCAAATGTTCACATTTGACATGTGCTCATTCAGATCTCAGCTATGCGAACTAGTCGACTGTTGTTAAAACTATGTTTTATTACGCCAAACGTACATTCTGGCAAATAAAGGACTTGCGGATAAACTGTCTTTACTGTGCTGCTAACAATCTAGACAAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06638	Strabismus	Strabismus protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009539	Family	Vang-like protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20886	VANG-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0001736	Biological Process	establishment of planar polarity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0060071	Biological Process	Wnt signaling pathway, planar cell polarity pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG23184.1 global RNA-seq network