Gene detail

Detailed information of RPACG22955.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG22955.1	NUCLEOTIDE KINASE	tig00035271	145638	158795	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG22955.1

ATGACCAACATGAGTGACAACAAGGTTGCCATGCCGACAAATGTGATGCCGATGACGTCACAGGCGCCATTACAACAGGCTGGCCAGATCAAGTTGACGATAAACACAACGCTGCAGTCGGTGACTGCCATTGGCTCCCCCGGCCCCGCCAACACGAGTCCCGGCATTCCAAGCACACCTGCTGGGCAACAGAAGCAACCTGGAAGCATGCCCAGTACCCCGGGCTTGGCGTACATGTCCCCTGGCCCCGCCCCTCTCTCCCCCGACCCTGTACATGATCTGCCCCCTGAGTTATTGGTGGCTGGTTGGAGGCGTTTCTGGAGTCGAAGGGAGAAGATGCCATATTTCTTTAACAAGATCACAAACGAGTCACGCTGGGAGATGCCTGTTCTTGGTCCTGGATCGCCGGACCCTATAAGTGATCCTCTGGGGATTGCAACTCCCTCAGAAGCAGGAAGTCCCCCTGTCAGGACAGGTTCAGGTTTCCCCCAATTGGTGGGGACTGAGGGAGGAGGTGAGCCAATGAATGTGGGGGAGAAACGACGCCACTCGGAGGAGATCCTCGTCCCACCACGCAAGAGAACTGCATTTAATTACAGGCCGTTTTGGAACTTTGACATCCCAACAAATGCCATCATCTATGAGCGACTGCCTGTGTTTGTGCCACCTCCTCACCCAGACATGGAGCAACTACGGGCGCAACTAGTGACCAAACTACGCAAGACTTACCAGGAGCTTTGTCACTCTAGGGAAGGCATAGATGCCCCAACTGAGTCATTCAACCGCTGGTTGCTGGAGAGGAAGGTCGTTGACAAGGGCTCTGATCCAATGTTACCAAGTCAGTGTACAATTGAGGTGTCACCATCGATGTACCGCGAGATCATGAATGACATTCCCGTAAAACTGGTGAAGCCAAAGTATACAGGTGACGCTCGTAGGCAACTTGTCAAGTATGCCGAGGCCGCCAAGAAAACCATAGAGAAACGGAGTACATCATCAGAGAGTCGCAAGATCGTCAAGTGGAATGCAGAGGACACGTTTGCCTGGTTGAGAAACAAACAACACAACGTGTCATATGAAGACTATCTGGAGCGACTTGCCCACCTGAAGCGACAGTGTCAGCCTCACCTCATTGAGGCCGTCCGTCCGTCTGTCGAAGGCATCTGTGTCAAGATCTACACCCAGTCATGTGATAGTGTGAAGAAGCTGGAGGAGAAGGGCTGGAACATCCTGAAAGAGAACAACATTCAAGCAACGCCCCCAGCACAAGTTCCCCCAAGGAGGAAGGTTATGTGCTACCCCGTCCAGATGTCAGTCTTGTCGCCACGGTTACCAGCTGTCGACCACCAAACAGAGGGGCAGAAAACGTTTCTACGATACAAGGGTGAAACCCTTGACCTGAATACACCACATCTCCATAAACTGGAGCAGTTATATCAGTGGAACTGTCGCGATGATCCTCGATATGAGAACTTTCTACCTCGAGTTTGGTGCTTGCTTCGACGTTACAAGAGTCTGTTTGGTTTACAACCAAATGAAGGATTTGGCCTGCAGGGGGCGCTGCCTACAGAGGTATTTGAGTGCCTGCATCGGATCTTCGGCGTAACGTCAGAATGTTTTGCATCTCCTCTCAACTGTTACTTCAGACAGTTCTGTTCTGCGTTCCACGACACAGACGGATTCTTTGGTTCTCGAGGGCCTATACTAGACTTCCACCCCATCAGCGGCTCGTTTGAGGTGAACCCTCCCTTCTGTGAGGAACTCATGGAGGCGGTCGTTGACCATCTCGAGAGTTTGCTGCGAGAGTCGACAGAGCCACTCTCGTTCATTGTCTTCATGCCGGAGTGGCGGGACCCTCCAACTGAGGCCCTCATTCGACTCGAGTCGAGCAGCTTCAAGCGGCGGCAGGCTGTCGTTCCTGCTTACGAACACGTTTATCGACATGGCTTCCAACACATCTGTCCTGTGTCAGAGATGAACATCAAAGCTCTCCATGGCACTGTCATCATCTTCCTTCAGAATGATGCAGGCTTTGCGAAGTGGGGTCCAACACCGGAGCGCATCAAGGAACTGTTGCTGGCCTATATTCCTCGCGAGTCACCAGCACTCATTCCTGCTCCCTGA

Transcript

RPACG22955.1

CGAAAGGGGAGTGCGCTGAAATGCACTCCGCAAATTCATGACTGGGACCCATTTGTAAGGTCTTCGATCTAATAATTTTGTGACCTATGTGCTGCCTAAACTAACATTCTACCACAATGTGCAAATTTCGTACACTGTTGTAGGCTGGATGGGCAGCCGTAGTAATGGATGCATTGACGCAACACGCGATCAAGCTACACAACAGCGAACTGACGCCACATGACCAACATGAGTGACAACAAGGTTGCCATGCCGACAAATGTGATGCCGATGACGTCACAGGCGCCATTACAACAGGCTGGCCAGATCAAGTTGACGATAAACACAACGCTGCAGTCGGTGACTGCCATTGGCTCCCCCGGCCCCGCCAACACGAGTCCCGGCATTCCAAGCACACCTGCTGGGCAACAGAAGCAACCTGGAAGCATGCCCAGTACCCCGGGCTTGGCGTACATGTCCCCTGGCCCCGCCCCTCTCTCCCCCGACCCTGTACATGATCTGCCCCCTGAGTTATTGGTGGCTGGTTGGAGGCGTTTCTGGAGTCGAAGGGAGAAGATGCCATATTTCTTTAACAAGATCACAAACGAGTCACGCTGGGAGATGCCTGTTCTTGGTCCTGGATCGCCGGACCCTATAAGTGATCCTCTGGGGATTGCAACTCCCTCAGAAGCAGGAAGTCCCCCTGTCAGGACAGGTTCAGGTTTCCCCCAATTGGTGGGGACTGAGGGAGGAGGTGAGCCAATGAATGTGGGGGAGAAACGACGCCACTCGGAGGAGATCCTCGTCCCACCACGCAAGAGAACTGCATTTAATTACAGGCCGTTTTGGAACTTTGACATCCCAACAAATGCCATCATCTATGAGCGACTGCCTGTGTTTGTGCCACCTCCTCACCCAGACATGGAGCAACTACGGGCGCAACTAGTGACCAAACTACGCAAGACTTACCAGGAGCTTTGTCACTCTAGGGAAGGCATAGATGCCCCAACTGAGTCATTCAACCGCTGGTTGCTGGAGAGGAAGGTCGTTGACAAGGGCTCTGATCCAATGTTACCAAGTCAGTGTACAATTGAGGTGTCACCATCGATGTACCGCGAGATCATGAATGACATTCCCGTAAAACTGGTGAAGCCAAAGTATACAGGTGACGCTCGTAGGCAACTTGTCAAGTATGCCGAGGCCGCCAAGAAAACCATAGAGAAACGGAGTACATCATCAGAGAGTCGCAAGATCGTCAAGTGGAATGCAGAGGACACGTTTGCCTGGTTGAGAAACAAACAACACAACGTGTCATATGAAGACTATCTGGAGCGACTTGCCCACCTGAAGCGACAGTGTCAGCCTCACCTCATTGAGGCCGTCCGTCCGTCTGTCGAAGGCATCTGTGTCAAGATCTACACCCAGTCATGTGATAGTGTGAAGAAGCTGGAGGAGAAGGGCTGGAACATCCTGAAAGAGAACAACATTCAAGCAACGCCCCCAGCACAAGTTCCCCCAAGGAGGAAGGTTATGTGCTACCCCGTCCAGATGTCAGTCTTGTCGCCACGGTTACCAGCTGTCGACCACCAAACAGAGGGGCAGAAAACGTTTCTACGATACAAGGGTGAAACCCTTGACCTGAATACACCACATCTCCATAAACTGGAGCAGTTATATCAGTGGAACTGTCGCGATGATCCTCGATATGAGAACTTTCTACCTCGAGTTTGGTGCTTGCTTCGACGTTACAAGAGTCTGTTTGGTTTACAACCAAATGAAGGATTTGGCCTGCAGGGGGCGCTGCCTACAGAGGTATTTGAGTGCCTGCATCGGATCTTCGGCGTAACGTCAGAATGTTTTGCATCTCCTCTCAACTGTTACTTCAGACAGTTCTGTTCTGCGTTCCACGACACAGACGGATTCTTTGGTTCTCGAGGGCCTATACTAGACTTCCACCCCATCAGCGGCTCGTTTGAGGTGAACCCTCCCTTCTGTGAGGAACTCATGGAGGCGGTCGTTGACCATCTCGAGAGTTTGCTGCGAGAGTCGACAGAGCCACTCTCGTTCATTGTCTTCATGCCGGAGTGGCGGGACCCTCCAACTGAGGCCCTCATTCGACTCGAGTCGAGCAGCTTCAAGCGGCGGCAGGCTGTCGTTCCTGCTTACGAACACGTTTATCGACATGGCTTCCAACACATCTGTCCTGTGTCAGAGATGAACATCAAAGCTCTCCATGGCACTGTCATCATCTTCCTTCAGAATGATGCAGGCTTTGCGAAGTGGGGTCCAACACCGGAGCGCATCAAGGAACTGTTGCTGGCCTATATTCCTCGCGAGTCACCAGCACTCATTCCTGCTCCCTGAAGCCATCAACAACTTCAGATAAATAAAAACTGAAAGTGAAACTGAATCCTGTTGTGGACTTCAGAGTTTCTGAATTTCAAAGTGAAGGTTGACAGATATTGAACATGATCATGAAACTAGCAGCATACCAGACATGCTGGAAATTAAAAACAAACTGATAACTGCATTGCAGTAAACTGAGAGTTTTGTCAGCAAACTGAAAATGGCATTGTGAAAGTGACAAGTAGAAGTGGGAAAGAGAAGAGTGTCTGGTGGCAAAGGACAATTATATTATATTTTTTTAAGTAGTACCCTGAATGGGAAGTTTGCTAAATACTGGTCTGTAGTTACTGTGTGAAGGGTACAGCATTACTGGCAAGTGAACGAGGTCAATTGGAGAACAGTAACGAGTGGACTTGTCCAACTGGAGGACAGTAACAAGTGGACTTGTCCAACTGGAGGACAGTAACAAGTTGATGTGTCCAACTGGAGGACAGTAACAAGTGGACTTGTCCAATTGGAGGACAGTAACAAGTGGACTTGTCCAACTGGAGGACGGTAACAAGTGGACTTGTCCAACTGGAGGACAGTAACAAGTGGACGTGTCCAACTGGAGGACGGTAACAAGTGGACTTGTCCAACTGGAGGACAGTAACAAGTGGACTTGTCCAACTGGAGGACGGTAACAAGTGGACTTGTCCAACTGGAGGACAGTAACAAGTGGACGTGTCCAACTGGAGGACGGTAACAAGTGGACTTGTCCAACTGGAGGACAGTAACAAGTGGACGTGTCCAACTGGAGGACAGTAACAAGTGGAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00406	ADK	Adenylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000850	Family	Adenylate kinase/UMP-CMP kinase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23359	NUCLEOTIDE KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004127	Molecular Function	(d)CMP kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006139	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0006225	Biological Process	UDP biosynthetic process	Interproscan
GO:0019205	Molecular Function	nucleobase-containing compound kinase activity	Interproscan
GO:0033862	Molecular Function	UMP kinase activity	Interproscan
GO:0046705	Biological Process	CDP biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG22955.1 global RNA-seq network