Gene detail

Detailed information of RPACG22862.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG22862.1	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT	tig00035264	477255	490944	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG22862.1

CTGTGGGTGTCGATTGGGAGATGGTGTTGAGGAAGGAGGTGAGAGACATAGGGATGGAGTCACAGGAAGGTACGGAGACTGAGGTGAGAGAAGAGGTGAAGATGCCAGGGAGAGGTCATGTCAAAAACCTCATACATCTCTTCTCCAATGGCCTCATTACAGGAAGTGGGACGTCTCTCACCCCAGCGACACAGACAGACAGCGTTGGTAACGTGACGTCAGCGTCAAAGTACGTCCTCAGCAGCAAAGCTGGAGATGACGTGTCATCAAAGTCAGACACGACTGAACGTCCGACATCAAATAATGATGTCGTCATTGTTGCAGCTGCCCACGGGCACACAGCGACCGATAGTAGTGCCTCTAGTGGCACTTCTGGTGAACACAAAGACACAGACGTTGTCGCGCCAACTGCAGTTGTTGGGACACCGTCATTGCGGATATCAGTGACAGACATCAAAGTAAACGGTTTGGTGCCACACCAGAACGAGGCTACAGACTCTGGGTCTGACACCGTTGATTCGTGTCACATCACCGTCAAACAGAATGGAGTGCTGCCGTTTGTTCCTCATCCGCCGGCATCTCCCAAGCCAGACAGGCGCTTCTCCCCACGGGACAAACAGGAAGTCCCAGTTGTGTCACAACCGGTCGCCATAGTTACAAACGGTGCTTCAAAAACGACAGAAAACATGGAGTGTTTGACGTCTGATGGACAGGGTGTCTGCCTAGATGCCAGACATTTGTGTGACAGTAATGGAGAGGGGGCGCCACTGGAGTTAAGAGACACAGTAAGGACGGCTGCAGTGCTGTCCGTGGAAGAGACTGCATGTAAGGATGGCGTGTACTTCCGCAAGGTGATGCAGCATGAGAGGAGTCACCTGGACCACCTGTGTGACATCACGGAGGGCCTCCTGGAGGCGGCCATACCTGACGAAGTGGCAGGCAAGATGCGCGCAACCGTTGGCAAGGCAAGGTTGCTGACAAACAAGAAATTTAAACAGTTTGATGGCTTGTGTAAACAACAAATGGACCAAGACGTCAATGAGAAGTTCAAGACAACGTCGCAGGACCTCGAAGGATTCTGGGATATGGTCTTACTACAAGTTGACGACGTCTACTCAATGTTTGCCGAGATAGAAAAGCTTCGTCGTAACAGCTGGATAGCTACGGAGGACACGACAGTGAGGTCCACACCGAACGTGTCCAGTGAGCCAGGGTCAGTCAAGTCCAAGAGTTCAGGCATCAAAGTGACAAAGTCAAAGGAAGCTAACTCGACTCGAGGAACAAAGAAACCATCCCAGCAGTCAGCAAGAAATGCGCAGCGGGATGAGGCTCGCAAGCGTCTCCTACTGGCCAAACGTGCAGGGCGACAGCGCAAGGCATCTCACAGTGAGACGGAGGTGGAGATATTTGTGTCCTAGGCCTTCTAGACAGGTGTCCTAGGCCTTGACAGAGATGGTGCTTCAACACTGCTGCAATCCACAGCGACTCTTGACAATCGTGGAAGTCGACTTCAAAACTTCAATTTTGTTTGCGTACCCATTGATACACACAAGTCGTGATGACGTAACTAGGGTGTGACCAGTCTATTTACGCAGTAGCGGCTTACTGTCTGCGTCCATCGATTCAGTATCCGTCACCTCATGTTTCCATGACAATGCACTGTGTCTTCTGTTATGACCAAGTCATACTCTGGTTATGAAAGGGGACTTCAACCATTTTAAATATAGGACATTACTGCTGGTTTTTATTCGTTTGCTTTAACCATCTGTGATATGTCTTGTCTAGGATGTACCTGGCTTGCTAACAAGTGCCCAATCAGTGTGTTTAGATGTTTTAGTTTATCCAAATGTCATTTATCTTGATCGCATTCAAATGCAACGTTTTGAAGTCACATTCATTTGTTTTGGCGATATATATATATCTGTACATGCGTTTCAGTTTATTTCAAATGTTTTGTTTTTATATTAAAATGTATTAGTCTCTAAGCGTAGGTTTATTCTAGGTGATTATGAACCCAACAACTATGCATGGCACACGTTACAAGGCACATGTGAAGAAATATACGAAAACAAAATATTTAGGTCGTGCATGCGAATGTGCTAAACCTGTCACAGCTGTGCTCGGATGTTCATTCGGATGCAGTTATCATGACACAGAAGTCTTGTTGGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03370	CBM_21	Carbohydrate/starch-binding module (family 21)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005036	Domain	CBM21 (carbohydrate binding type-21) domain	Interproscan
IPR038175	Homologous_superfamily	CBM21 domain superfamily	Interproscan
IPR050782	Family	Protein phosphatase 1 regulatory subunit 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12307	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000164	Cellular Component	protein phosphatase type 1 complex	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005979	Biological Process	regulation of glycogen biosynthetic process	Interproscan
GO:0008157	Molecular Function	protein phosphatase 1 binding	Interproscan
GO:2001069	Molecular Function	glycogen binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG22862.1 global RNA-seq network