Gene detail

Detailed information of RPACG22772.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG22772.1	TYROSINE AMINOTRANSFERASE	tig00035249	578982	585931	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG22772.1

ATGGGGACATTGGCTACCAGCGTCATGTTGGTAAAACGGAACATGTCAGAAATTACCAACCTGAAGCGACGCAAAGTAAAACAGAAACGGTCGTCTCCTGCAAATACAGCACCACCACACTTGGCGGTGAGACCAGCCACAAATGAGGCAATGATGAATAAGAGTAGTCCAACACAGTTTTCATTGCGGGCAACTGTGAATGTGGCTAAGAGTGACTCATCTTTAATGGTTGGTGCCCCAGATATGACACAGAAGCACACTTCTTATGTTGCTGATCGCAGACCCAGAACTTATACAGCAAGTCCTGTGACATCTGAATCGAGCTCATCTGAGCCATTCCCAGTCGTTGTTGGCCAAAATCCTGGCCTGGTTTCAGTGTTGAGCAGCCAGACTAAACCTGTCGTAGATTCAACGGTTGTCAGTCCACGCAGGTTCCTCCAGTGGAGCAACGTGGATGCCCTCTGCTGGATGGATGTGACACTATGTCTGCTCGTCCACTGTACAAACCTGAAGGTGTTGGTGGCAACATCTGGTGGAAGTGACACATCGCTAGTGAGAAGTTTGCTGGTGCGGTATAAGGAGATCCTTGCATTGTGGGACAGCACTAGTTTCGGTGTCAGAGCAAGTGTCAAAGAAACAAAACTGATGAGCTTGGAGACAAGCATTGGCAAGGTGTCCGTGAAGACAGGAGGCGGTGGACTTGAACATCTAGTTAGTCCCCCTGCCGACAGTTTGGAGGAAGGCAGGGCCTCTCTGTGTGAAATAAACACATCTCCTGTGATTATGAAGTCGAATCGGCCCGGAGCAACTATCACCCTAGAGACAGCGCGTCGAATGTTAGCCGACGTGCGTGACACTGTTTTGGCATGTCAGCCAAAGCTGCTCTGTGAACGAGGCCGTAATCACAGTCCTGTGTTTGCACTGCCACTGTTGCTAGGCAATGCTGATCAGGCGGTACACGATCATTTCAGGGTGGAGTATTGTTGGCGAATGAAATGTACACAGTGCCATCATTGCCATGAAGACAGGGTTGCAAAGACAGTGCCAACGTTCCCAGCTGTGCCAAATGACTTCTCCATGAAGCAGCCGTGTTTCCTGCGAGCCTGCTTCAAGTGTCAGTCTCCTGGACAACGGATGAACATGCACATTGACAGAATGCCTACTACACTCCTCGTCCACTTCGTAGAAGGTTTGTCAGATCCACAACTTACAAACTATGACTTCCAGTTTGGTGGGACAACATATGCAGTCACAGGCCTGGTTCAATACAAGACCAAACCAGATCACTTCATTGCTTGGATCAGAGATGTTCACTCAAATTGCTGGATGATGTGCGACGATCTTCAGAACCCCATCTGCGAGTTCTCAAGTCATGTTCCCAGCTTCCCTCCCTCCCAGGTGCACATTGTTATGTGGGAGAGACAGAATCGCCGTGGCAATGCCATTGTCATGGATACTGTCACCAACCTTCCAATGACAACACAAGATATTACGAACACCACAGTCCCTGCCAGGCTGATATACATCTCAACTACCACTGTGCCACCAGGTGTCACCACTGCTGTACCGCCAGGTGTCACCACTGTTGTGTCGCCAGGTGTCACCACTGCCGTGCCGCCAGGTGTCACTGTTCTCACTGGCCCAGTCATTATGACTCCAGCTTTCATTACAACAAACACATCAGGTACCCAGCAACAATCACCGGCATTGATGACAGTGTCACAGCTTGCGGTCCCGGCTGGAATGCCCTTTCAACCTGCCACAACTTCTGTGGCTGTCGCCAAGGTAACAGGGTCGAGAACCAAGACCAGCAAAAACGCGGACAACCCACGGCTTCAGAGATGTCGCGAGAAGTTTGAGCGCGCAAAAGCAATGCAACAATGTGCAGTGGCCCAAGTATTAATCCCTTCGCTGCCTACCGTTCTCTGTCTGCCTAACTTGTTGTGCAGACAACCTCAAACAAACCTCCCAGTAATACCACCGTCTACGCCTGTCATAGTTAATCAATTGTCAGTGACAGCAGCACAGGTGAGACCCCAAGACAAGACGGTGTCACATGGCATGCTTGTCTCGTCTTCCCAGAATCCTCAAGAAAATGCACCGGTAACAGTCACTACCAGCAGTGTGAAGTCGGCAGCTCGAGTCATCCGTGCAGTGCCTGTGTTTGCTGGCTACACGGCCAAGTCGGGAGCCCACAAACGTAGCGTCAACAGCTCAGGTGAAGGTAACACTTTGTCATCAGTTAACTGTGCTAACATACCGTCTGCAGTCAAAGCTAGCACTTTGTCAACAGCCAACTGTGCCCCATTATCAGCGGGTTGTGGGGGTAACTTATCGTCTTCAGGAAAATATACTCTTAAGACAAACAGCGATGCTAACAAGTCATTGCTAGCAAGTAGCAGTGCCACAACGTCAGCAACGTCAACTGCGTCATGCACAAATACAGCAATGACGACGGCATCAAAGAAACGAGTCATAGGCCAGTTTGGTGGAAATGACAAGCGACGTAGACTCTCTACACATTCCACTCATCAAGCTGTGTCAACACGCGTCACTAAGTGTGTCACTAGTCTACAAACTCAGCCTGACACTGCCTCATGTTCTCCGACACAAGTTGACACATCACAAGTTCATAAGACTGATGATTCAGACAAGTTGACAGATGTACTGGACGAGCTGTGTTCGACACTTGACATGTCAGATGTGTCACAATGTGTGGTTCCTGACGTAGTTTTTGACTGTGATGACGTTATTGATTTTGACTCACTGCTAGCTGTGTGA

Transcript

RPACG22772.1

CAATGGGGACATTGGCTACCAGCGTCATGTTGGTAAAACGGAACATGTCAGAAATTACCAACCTGAAGCGACGCAAAGTAAAACAGAAACGGTCGTCTCCTGCAAATACAGCACCACCACACTTGGCGGTGAGACCAGCCACAAATGAGGCAATGATGAATAAGAGTAGTCCAACACAGTTTTCATTGCGGGCAACTGTGAATGTGGCTAAGAGTGACTCATCTTTAATGGTTGGTGCCCCAGATATGACACAGAAGCACACTTCTTATGTTGCTGATCGCAGACCCAGAACTTATACAGCAAGTCCTGTGACATCTGAATCGAGCTCATCTGAGCCATTCCCAGTCGTTGTTGGCCAAAATCCTGGCCTGGTTTCAGTGTTGAGCAGCCAGACTAAACCTGTCGTAGATTCAACGGTTGTCAGTCCACGCAGGTTCCTCCAGTGGAGCAACGTGGATGCCCTCTGCTGGATGGATGTGACACTATGTCTGCTCGTCCACTGTACAAACCTGAAGGTGTTGGTGGCAACATCTGGTGGAAGTGACACATCGCTAGTGAGAAGTTTGCTGGTGCGGTATAAGGAGATCCTTGCATTGTGGGACAGCACTAGTTTCGGTGTCAGAGCAAGTGTCAAAGAAACAAAACTGATGAGCTTGGAGACAAGCATTGGCAAGGTGTCCGTGAAGACAGGAGGCGGTGGACTTGAACATCTAGTTAGTCCCCCTGCCGACAGTTTGGAGGAAGGCAGGGCCTCTCTGTGTGAAATAAACACATCTCCTGTGATTATGAAGTCGAATCGGCCCGGAGCAACTATCACCCTAGAGACAGCGCGTCGAATGTTAGCCGACGTGCGTGACACTGTTTTGGCATGTCAGCCAAAGCTGCTCTGTGAACGAGGCCGTAATCACAGTCCTGTGTTTGCACTGCCACTGTTGCTAGGCAATGCTGATCAGGCGGTACACGATCATTTCAGGGTGGAGTATTGTTGGCGAATGAAATGTACACAGTGCCATCATTGCCATGAAGACAGGGTTGCAAAGACAGTGCCAACGTTCCCAGCTGTGCCAAATGACTTCTCCATGAAGCAGCCGTGTTTCCTGCGAGCCTGCTTCAAGTGTCAGTCTCCTGGACAACGGATGAACATGCACATTGACAGAATGCCTACTACACTCCTCGTCCACTTCGTAGAAGGTTTGTCAGATCCACAACTTACAAACTATGACTTCCAGTTTGGTGGGACAACATATGCAGTCACAGGCCTGGTTCAATACAAGACCAAACCAGATCACTTCATTGCTTGGATCAGAGATGTTCACTCAAATTGCTGGATGATGTGCGACGATCTTCAGAACCCCATCTGCGAGTTCTCAAGTCATGTTCCCAGCTTCCCTCCCTCCCAGGTGCACATTGTTATGTGGGAGAGACAGAATCGCCGTGGCAATGCCATTGTCATGGATACTGTCACCAACCTTCCAATGACAACACAAGATATTACGAACACCACAGTCCCTGCCAGGCTGATATACATCTCAACTACCACTGTGCCACCAGGTGTCACCACTGCTGTACCGCCAGGTGTCACCACTGTTGTGTCGCCAGGTGTCACCACTGCCGTGCCGCCAGGTGTCACTGTTCTCACTGGCCCAGTCATTATGACTCCAGCTTTCATTACAACAAACACATCAGGTACCCAGCAACAATCACCGGCATTGATGACAGTGTCACAGCTTGCGGTCCCGGCTGGAATGCCCTTTCAACCTGCCACAACTTCTGTGGCTGTCGCCAAGGTAACAGGGTCGAGAACCAAGACCAGCAAAAACGCGGACAACCCACGGCTTCAGAGATGTCGCGAGAAGTTTGAGCGCGCAAAAGCAATGCAACAATGTGCAGTGGCCCAAGTATTAATCCCTTCGCTGCCTACCGTTCTCTGTCTGCCTAACTTGTTGTGCAGACAACCTCAAACAAACCTCCCAGTAATACCACCGTCTACGCCTGTCATAGTTAATCAATTGTCAGTGACAGCAGCACAGGTGAGACCCCAAGACAAGACGGTGTCACATGGCATGCTTGTCTCGTCTTCCCAGAATCCTCAAGAAAATGCACCGGTAACAGTCACTACCAGCAGTGTGAAGTCGGCAGCTCGAGTCATCCGTGCAGTGCCTGTGTTTGCTGGCTACACGGCCAAGTCGGGAGCCCACAAACGTAGCGTCAACAGCTCAGGTGAAGGTAACACTTTGTCATCAGTTAACTGTGCTAACATACCGTCTGCAGTCAAAGCTAGCACTTTGTCAACAGCCAACTGTGCCCCATTATCAGCGGGTTGTGGGGGTAACTTATCGTCTTCAGGAAAATATACTCTTAAGACAAACAGCGATGCTAACAAGTCATTGCTAGCAAGTAGCAGTGCCACAACGTCAGCAACGTCAACTGCGTCATGCACAAATACAGCAATGACGACGGCATCAAAGAAACGAGTCATAGGCCAGTTTGGTGGAAATGACAAGCGACGTAGACTCTCTACACATTCCACTCATCAAGCTGTGTCAACACGCGTCACTAAGTGTGTCACTAGTCTACAAACTCAGCCTGACACTGCCTCATGTTCTCCGACACAAGTTGACACATCACAAGTTCATAAGACTGATGATTCAGACAAGTTGACAGATGTACTGGACGAGCTGTGTTCGACACTTGACATGTCAGATGTGTCACAATGTGTGGTTCCTGACGTAGTTTTTGACTGTGATGACGTTATTGATTTTGACTCACTGCTAGCTGTGTGAGTCGGGGAATCATTGACTCACTACGAGCTGTGTGAGTCGGGGATTTATTGACTCCTAGCTGTGTGAGTTGGGGAATCATTTGACACATTGCTAGCTGTGTGAGTTGGGGAATCATTTGACACATTGCTAGCTATGTGAGTCGGGGAATCATTGACTCACTGCGAGCTGTGTGAGTTGGGGAATCATTGACTCACTGCGAGCTGTGTGAGTTGGGGAATCGCAAGTGACATTGCATTGCGATTGGTTTGCTTAATTTTTTATGTTTTTGTTATTGTCCTTGCATTCATGCATCCCTTTACGAAACAGTGATACGTTTCTCAATAATGAATTAATTTAAAATTATACATTTACAAATTTGATCTACTGTATCAAGAAATCTGGTTGGAAATAATAGCTCATCATTGTTTAGTGCATCCTCTTGAAACAGAATGCTATCGGTACTTTTTTTAAAGCAGATTTGTACCTTAGTAGATTTGTACCACAGTTATCTCCTACTCGTCCTGCACTGATTGTGTTGTCACGAACTGTTTTGGCCATATATGTCAAATCTTGTGCACATTGTTCCTTGACTGTGATATTTTGAATAAAACATTCTGTGATTGATTCGTGATTCGTGATTCGTATGCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004838	Binding_site	Aminotransferases, class-I, pyridoxal-phosphate-binding site	Interproscan
IPR004839	Domain	Aminotransferase, class I/classII	Interproscan
IPR015421	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45744	TYROSINE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004838	Molecular Function	L-tyrosine-2-oxoglutarate transaminase activity	Interproscan
GO:0006559	Biological Process	L-phenylalanine catabolic process	Interproscan
GO:0006572	Biological Process	tyrosine catabolic process	Interproscan
GO:0009058	Biological Process	biosynthetic process	Interproscan
GO:0030170	Molecular Function	pyridoxal phosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG22772.1 global RNA-seq network