Detailed information of RPACG22548.1 in Riftia pachyptila Gene info
Gene IDAnnotationContigStartEndStrand
RPACG22548.1SCAVENGER RECEPTOR CLASS Ftig00035216623375627480-

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
--

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00053Laminin_EGFLaminin EGF domainDomainInterproscan
PF12661hEGFHuman growth factor-like EGFDomainInterproscan
PF12662cEGFComplement Clr-like EGF-likeDomainInterproscan
PF14670FXa_inhibitionCoagulation Factor Xa inhibitory siteDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000152PTMEGF-type aspartate/asparagine hydroxylation siteInterproscan
IPR000742DomainEGF-like domainInterproscan
IPR001881DomainEGF-like calcium-binding domainInterproscan
IPR002049DomainLaminin-type EGF domainInterproscan
IPR009030Homologous_superfamilyGrowth factor receptor cysteine-rich domain superfamilyInterproscan
IPR011489DomainEMI domainInterproscan
IPR013032Conserved_siteEGF-like, conserved siteInterproscan
IPR018097Conserved_siteEGF-like calcium-binding, conserved siteInterproscan
IPR026823DomainComplement Clr-like EGF domainInterproscan
IPR042635FamilyMEGF10/SREC1/2-likeInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR24043SCAVENGER RECEPTOR CLASS FInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005044Molecular Functionscavenger receptor activityInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
------

Expression pattern
 1. Expression trend for RPACG22548.1 global RNA-seq network
TOP