Gene detail

Detailed information of RPACG22545.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG22545.1	FIBROUS SHEATH CABYR-BINDING PROTEIN	tig00035216	490839	527352	-

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG22545.1

ATGGCGGAAGCCATATGTGATGTTAGCAAGCTGCGGGTGTTTGCGTTCGACGAAGGCAGTAATGCGCCAAAAGATTTTCTTCGGGCCTGGAGAAAGGCTCTTCTGCGACGTTTCTTTCGAACAAGGAACCTGATCCGCAATGGGATGTGGCCAACGTCAATCTGGAACCTCATGGTGTGTGTCGCTCTCTTCTCCGTCCTCCTGGTCAGAGACTGGGACTGGGCTAAACCCGTAACATCCCGACTGTGGAATATTGGCAAAGTCTGTTGTCTGCATGAAGGTGTCCCGTTCCCACTCCGAGTGCTGCTCATCTCCACCATTGGCGGCATCGTCTTCTTCGTTGTGCTCATGTACAAGCGGCGCTGGTTGCTGCGTGTCCTGCTCTCCTACAACGGCTGGATGTATGAGATGCCACGGTCAAACTCGATGCGCACCTACGTGTGGGGTACATGTGTGAAGCTGCTCTCCGGTTATCACCCCACCCTGTACAGCTGTCAGAAGAGCCTGCCCTACTTACCCCTCCCACGGCTCAACGACGCTGTCGACAAGTTCCTCGCCTCCCTCCAAGCTCTTTATGGCAAGGAGTCGGACAAATACCATGAGTTCGAGACTGAAGCTGAGAAGTTCAAGAATGGTGTCGGTGTGAAACTACAGAGGGCGCTAGTGCTCAAGTCGTGGTGGGCACAGAACTGGATCACGGACTGGTGGGAGAAGTATGTCTACCATATGTGTCGGTCGTCTCTCGCCATCAACAGCAACTACTACATCGGGGACCTGAGTCACTGGCAGCCCACTCACAGACAGGTGTCCAGGGCGGCCAGTGTGACCCACCAGATGCTGTGCTTCAAGCGTCTCATTGAGAGGGAGCAGTTGCCACCTCTCTTCATCCGCAACACTATCCCCCTGTGTATGAGCCAGTACGAGAGGATGTTTGGCACAACCAGAATCCCAGGACAAGAGGTGGATGAATTGGTGCAGGCGACTAAGTCAAAGCACTTGGCAGTGCAACGACTGGGAATCTACTACCTGGTGGATGTGGTGGACGTTTATGGTCAGCCGCTGACCGCCCAGAGCTGGGAGAAACAGATGCAGTGGATCATTGATGATGCTGACAGACACCAAGACGAGTATTCCGCAGGGTCACGAACTCTGGCAACACTCACTGCTCTGGACCGCACCATGTGGGCCAGAATGAGGCAGAAATACTTTCAAACGGGCGTCAACAAAGACTCGCTCGATATCGTTGAGAGTGCCCTCTTCCACGTGGTGCTAGATAGCCATTGTTTCAAGACGTGGAGCGAACGAGGCAAGTACATGTTGCACGGCAGTGGCTCCTCCGTGTGGTTCGACAAGAGCTTCAATCTCCTCGTCTTCTCTGACGGACGCAGTGGCATCAACGCAGAACACTCGTGGGCTGATGCCCCAGTCATGGGTCATGTGAACGAGTACTACCTCACCAACGAGGTCCTGCAAGATCTGTATGATGCTGATGGCTTCTGTCGCCCAACGCCTGACGTCAAGCAGGCCACTGTCCGCCAGCCCGTCAGACTCGTGTGGGACATGACAAGTGAGCTGGAGGTCAAAGTTCAAAGGGCATTAACTATCAGTCAGCAGAACAATGACGACTTAGACTTCTGCATGCAAGAGTTCTCTGCGTACGGCAAGGGTTTCATCAAACAGTGCAAGGTGAGTCCAGATGCCTACATCCAGCTGGCTCTGCAGTTGGCCTACTACCGTGACGCGGGCAGGTTTGTGTTGACATACGAGGCCAGTATGACGCGTCTCTTCCTACTCGGTCGCACGGAGACAGTTCGCTCACTCACACAAGAATCGTGCAACTTTGTTCGGTCAATGTTTGATGAGAATGCGACAGACCAGGACCGGATAGAACTGCTGCGAATGGCCTGTACGAAACACCAGTCTCTGTACCGGGATGCAATGACAGGGAAGGGCATTGACCGCCACCTCTTTGGGCTCTACGTTGTCTCAAAGGGCCTTGGGCTGGAGTGTGACTTCCTGAAGAAGGCACTTGCCATCCCATGGATTCTCTCTACAAGTCAACAGCCACAGCAGCAGATTGTGACGTCACCATCATGTGACGACCCACAGTACAGGAGCCAGATCTGTCCTGGTGGGGGGTTTGGGCCTGTGTCCAGTGATGGCTACGGAGTGTCATACATGATCCCCGGCAGTCAGCTCATCTTCTTCCACGTCACCGCAAAGAAGTCCTGTTCCGCGACGGACGCACGGCGCTTCACGCGTCTCATCTTCCAGAGTCTCTGGGACATCCGCAAACTGTTTGAGCCGGATCTACACTCTGACGACATGGACGCGGTCATCAATGGCACGATTGACGTCAACCATGTGTCGACACACATGGCCAATGGCACTGCGTCGACGAAGTGA

Transcript

RPACG22545.1

CATTCATCAGTCAGCGCAATGTTATCAGAGACTAAGCGCTGAGCGCTGGTGGTAGTGTATTGTGTGATCAAACATCTGCGTCTCGAAGTGGATGCGATTGTCAGCTATACATTTCTACGCATAAACGCAGCAAAGTTGGCTATAGTGAATAATGGCGGAAGCCATATGTGATGTTAGCAAGCTGCGGGTGTTTGCGTTCGACGAAGGCAGTAATGCGCCAAAAGATTTTCTTCGGGCCTGGAGAAAGGCTCTTCTGCGACGTTTCTTTCGAACAAGGAACCTGATCCGCAATGGGATGTGGCCAACGTCAATCTGGAACCTCATGGTGTGTGTCGCTCTCTTCTCCGTCCTCCTGGTCAGAGACTGGGACTGGGCTAAACCCGTAACATCCCGACTGTGGAATATTGGCAAAGTCTGTTGTCTGCATGAAGGTGTCCCGTTCCCACTCCGAGTGCTGCTCATCTCCACCATTGGCGGCATCGTCTTCTTCGTTGTGCTCATGTACAAGCGGCGCTGGTTGCTGCGTGTCCTGCTCTCCTACAACGGCTGGATGTATGAGATGCCACGGTCAAACTCGATGCGCACCTACGTGTGGGGTACATGTGTGAAGCTGCTCTCCGGTTATCACCCCACCCTGTACAGCTGTCAGAAGAGCCTGCCCTACTTACCCCTCCCACGGCTCAACGACGCTGTCGACAAGTTCCTCGCCTCCCTCCAAGCTCTTTATGGCAAGGAGTCGGACAAATACCATGAGTTCGAGACTGAAGCTGAGAAGTTCAAGAATGGTGTCGGTGTGAAACTACAGAGGGCGCTAGTGCTCAAGTCGTGGTGGGCACAGAACTGGATCACGGACTGGTGGGAGAAGTATGTCTACCATATGTGTCGGTCGTCTCTCGCCATCAACAGCAACTACTACATCGGGGACCTGAGTCACTGGCAGCCCACTCACAGACAGGTGTCCAGGGCGGCCAGTGTGACCCACCAGATGCTGTGCTTCAAGCGTCTCATTGAGAGGGAGCAGTTGCCACCTCTCTTCATCCGCAACACTATCCCCCTGTGTATGAGCCAGTACGAGAGGATGTTTGGCACAACCAGAATCCCAGGACAAGAGGTGGATGAATTGGTGCAGGCGACTAAGTCAAAGCACTTGGCAGTGCAACGACTGGGAATCTACTACCTGGTGGATGTGGTGGACGTTTATGGTCAGCCGCTGACCGCCCAGAGCTGGGAGAAACAGATGCAGTGGATCATTGATGATGCTGACAGACACCAAGACGAGTATTCCGCAGGGTCACGAACTCTGGCAACACTCACTGCTCTGGACCGCACCATGTGGGCCAGAATGAGGCAGAAATACTTTCAAACGGGCGTCAACAAAGACTCGCTCGATATCGTTGAGAGTGCCCTCTTCCACGTGGTGCTAGATAGCCATTGTTTCAAGACGTGGAGCGAACGAGGCAAGTACATGTTGCACGGCAGTGGCTCCTCCGTGTGGTTCGACAAGAGCTTCAATCTCCTCGTCTTCTCTGACGGACGCAGTGGCATCAACGCAGAACACTCGTGGGCTGATGCCCCAGTCATGGGTCATGTGAACGAGTACTACCTCACCAACGAGGTCCTGCAAGATCTGTATGATGCTGATGGCTTCTGTCGCCCAACGCCTGACGTCAAGCAGGCCACTGTCCGCCAGCCCGTCAGACTCGTGTGGGACATGACAAGTGAGCTGGAGGTCAAAGTTCAAAGGGCATTAACTATCAGTCAGCAGAACAATGACGACTTAGACTTCTGCATGCAAGAGTTCTCTGCGTACGGCAAGGGTTTCATCAAACAGTGCAAGGTGAGTCCAGATGCCTACATCCAGCTGGCTCTGCAGTTGGCCTACTACCGTGACGCGGGCAGGTTTGTGTTGACATACGAGGCCAGTATGACGCGTCTCTTCCTACTCGGTCGCACGGAGACAGTTCGCTCACTCACACAAGAATCGTGCAACTTTGTTCGGTCAATGTTTGATGAGAATGCGACAGACCAGGACCGGATAGAACTGCTGCGAATGGCCTGTACGAAACACCAGTCTCTGTACCGGGATGCAATGACAGGGAAGGGCATTGACCGCCACCTCTTTGGGCTCTACGTTGTCTCAAAGGGCCTTGGGCTGGAGTGTGACTTCCTGAAGAAGGCACTTGCCATCCCATGGATTCTCTCTACAAGTCAACAGCCACAGCAGCAGATTGTGACGTCACCATCATGTGACGACCCACAGTACAGGAGCCAGATCTGTCCTGGTGGGGGGTTTGGGCCTGTGTCCAGTGATGGCTACGGAGTGTCATACATGATCCCCGGCAGTCAGCTCATCTTCTTCCACGTCACCGCAAAGAAGTCCTGTTCCGCGACGGACGCACGGCGCTTCACGCGTCTCATCTTCCAGAGTCTCTGGGACATCCGCAAACTGTTTGAGCCGGATCTACACTCTGACGACATGGACGCGGTCATCAATGGCACGATTGACGTCAACCATGTGTCGACACACATGGCCAATGGCACTGCGTCGACGAAGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07382	HC2	Histone H1-like nucleoprotein HC2	Disordered	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009970	Family	Histone H1-like nucleoprotein HC2	Interproscan
IPR043375	Family	Fibrous sheath CABYR-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36135	FIBROUS SHEATH CABYR-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0030261	Biological Process	chromosome condensation	Interproscan
GO:0030527	Molecular Function	structural constituent of chromatin	Interproscan
GO:0033234	Biological Process	negative regulation of protein sumoylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG22545.1 global RNA-seq network