Gene detail

Detailed information of RPACG22416.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG22416.1	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	tig00035204	312726	332542	+

Gene Structure

More details in Jbrowse Sequence

CDS

RPACG22416.1

ATGGATCCTAACAACTGGTCAGGCAATTTCAACCAGCAGTACAGCCAGCTAACTGATGGAGCCAATCTTTCCCAGCACCCAGTGGTTCTTGGTCAGCCTGGGTTGTCTGCTCTCCAACAGACTGGACTGGCAACTGCAGGAAACACAGTGGTGATCGAAACACAGAGGGATTGGAATTTGTCAACGACTGCGCCAAATGCCTACGGCGTGTGCGCCAACTCTGCCGCTCAAACAAAGCAGTCAGGTGTCGTTCAGGCCCAGCAGAATGTGGAAGTGCTGCTGAATGCTCCACAGTCGCAGCTGCCACAGCTGTCCGAGTGTGTTTACCAGGACCCCAATCAGACTGGTGTTGTGCTTGCAGACACGGACACCTACACAGAAACAGTGTCACAGCCAACAACACAGTACACGATTTACACTGAAAACAGTGGTCCATCGTTTATGGTTCAGTCAGCTGACCAGTACACCAGTGCTGTTCCCGCAGTGAACTACAAAGCACCGGAACCACACAACATTGCAACTGAAAATGCACAGTCCCTGACTGGCATTCACAGTGACATAAACACGACAATATCGCTAGACGATCTAGCTGCGGTCCATTCTAATGACATTGTTCAACCTAGCATCAGTGACATAGTGGTTGGTGTCGACGGCATTCAACGCAACAGTCCTGTCACAGTCCAGGCTATTGCGGACTCAACTACCGGCAACAGGAAGCTTGCGTGTAGTGATCACACAAAAGTGAATGTGGGTGTGAACAGCCAACTGACGCTACCTACTGACGTCGTTTATGAGACACTAACGGTGTACGAAGCAGCGAACATTGACACTGCCAACACAGTTGTTTATGACAGCCAGCAGATGGAGCCACAGCAGCAAGTGATTCGAGAGCAGGTGTTTCTTATGAACACTGAAGGCAATACCTTCATTGTTGATGGCGACACAACATTGCCTGTGTCTTCCCTGCAGCCTGGGCAGGAGACTTATGACAATCGCACAAAAGTGAAGGATGTTTATCAGCCGCCTCGCCAGGAGGTAATAGCTGGCACTGCAACCATACAGCCTGCAACAGAAGTCAAACCTAAACCACCAACGGTGAGGATTGTAACGAAGAAAACTGCTACACCAAAACCAGTCATAAAAAAGAAAGAAGACAGTTGTCCTCCATATGACAACGACAGGCCTGTGCCCCATGCACCGAAGCCAATTCCTGGTGTCAGTTCATTTCAGAACTCGTTCCTAAGTTTCCTTCAGGGCAGGAAACAGGAGACTCTGTCAAGTGTTACAGCTAGTCCTGTCATCAAGAAACCAATGCTGCCAAAGTACATCCCTTTACCAAAGTCAACCGTAAAGCCACCAAGTGAAACTGAGAAAACAGTATATGTGGCAGCAACACAGAAATCATCTGGTAACAGTACGAAGGCAGAATTGGCACCAGTGCCAGTCACGAAGAAGGTTGAGGCAACCGCAGCAGTTACTGGTAACCATGTGAAGGCTGTAGTTTCAATGCCCCAACCTCAGACAGTTGCCACCACGAAGTCTGGAGGAAGTTCAATAAGAGGTCGTCGACCGAAGAAGTTGGGTCATCGGCTGAGTGGTACACCAATACAACCTTCTGTCTCCGATGACGACGAATTAGCCGTTGCCGAGGAGGGTGAAGTAATTGCACGCCCTGTTGCACCCCGTATAAGGCCGATGCGGAAAGCAAAGGAGAAGGTGGTACAGAGACTGAGCAGGATGAAGACAAAGAAGAGTAGACAAAGTACAAGTGACTTATCTGATTCGGGTTCTGACGAATTTGTTTCAAACCTGAGCAATTCTGATGAGAACGCAACAGACTCAGACAGTGATCCTTCCTGGAAGCCTACTGCTCTGGGGGCAGAGACAGAGAAAAGGAAGTCGGTCTCAGACGATGAGAGTCGACCAAAACGAGGGAGACCAAAAAAACGACCGAGATTGAGCACTCCAAAGGCAGGAGCGGTCCAGGGAGGGTCGACAGCTACGGACGCCACCAAAGCTTCTGCTCTACCAGGCTTCCAGAAAGGAATGTTTGTGGTGGAGAAGTCCCAAATAGAGAAGGGAAGTGGATGGAAGACGCAGCCCATCTGGAAGGTAGACGTTAGTCGACTACTAAAGAAGTATGAGCCAATAACAATAGATGACCGCCTCGTTCATACGGCCAAGACAATGTATATGAGTTGGAACAACCAGGATGAGGCAAACTACTGCCGAGTGATGGTGAGACCAGTCGAGTCGGTTGACAGCGAGGTCGTAGAGGTCACAGAGGTCGTCCCTCCCAAGCAACCAGTGAGTGGTGACCAGCTGATGCAGCCATTTGACGTGTACATACAAATCCTGCTTAGCCAAGCCCTCGAGCCTGGTTTCCTTGCAGCTCTTCACAATGAACCAGATGAATATTATATGGGGCCACTGAAGACCATTGATGAATCGCTTGCTGAAAGCAAGACTCATATGTTAAACTTACTACACTGGACAGCCACATTCACAGAGACAGTCGAGTATTACCCCTACATACATGTTGTTCAAAGTTCAACTTTAAAAGATTACTGCCAGGCATGTCAGGATGAGACTCAGGAAGCCGTCAAGTCTGTGTTGTTATCAGGAAATGGCTACGACCGGAAAACACTGGTGACAAAGACGGAAGATTCATCATCATTCATACAGAAGACGTTCTCGGTTGGTTTGTTGACATCGCAACACGTGACGGTGTATCATTCCCTACATCACACCAAGTTCAGACTCTACCAAACTTGTGTCGCCAAGGTGAACTGGTTGAAGAGTAAGAAGGTGGAGGAACACAGCGACATCCTGGAACAGTGTCTACAAGATCGGGACTGGATACAGAAGCTGTACAAGAACTTGAAAGATCTCCTCAGACAGAGTCGCACTGTTACGCCACATAAATAG

Transcript

RPACG22416.1

GCAACAAATGGCATTGTGAGTTTGCTGCCACTGATTGAAAAGAAGACAAATGATCAGTGTGGTCTTCTTCGTTGACTTGCTAGACCATGGATCCTAACAACTGGTCAGGCAATTTCAACCAGCAGTACAGCCAGCTAACTGATGGAGCCAATCTTTCCCAGCACCCAGTGGTTCTTGGTCAGCCTGGGTTGTCTGCTCTCCAACAGACTGGACTGGCAACTGCAGGAAACACAGTGGTGATCGAAACACAGAGGGATTGGAATTTGTCAACGACTGCGCCAAATGCCTACGGCGTGTGCGCCAACTCTGCCGCTCAAACAAAGCAGTCAGGTGTCGTTCAGGCCCAGCAGAATGTGGAAGTGCTGCTGAATGCTCCACAGTCGCAGCTGCCACAGCTGTCCGAGTGTGTTTACCAGGACCCCAATCAGACTGGTGTTGTGCTTGCAGACACGGACACCTACACAGAAACAGTGTCACAGCCAACAACACAGTACACGATTTACACTGAAAACAGTGGTCCATCGTTTATGGTTCAGTCAGCTGACCAGTACACCAGTGCTGTTCCCGCAGTGAACTACAAAGCACCGGAACCACACAACATTGCAACTGAAAATGCACAGTCCCTGACTGGCATTCACAGTGACATAAACACGACAATATCGCTAGACGATCTAGCTGCGGTCCATTCTAATGACATTGTTCAACCTAGCATCAGTGACATAGTGGTTGGTGTCGACGGCATTCAACGCAACAGTCCTGTCACAGTCCAGGCTATTGCGGACTCAACTACCGGCAACAGGAAGCTTGCGTGTAGTGATCACACAAAAGTGAATGTGGGTGTGAACAGCCAACTGACGCTACCTACTGACGTCGTTTATGAGACACTAACGGTGTACGAAGCAGCGAACATTGACACTGCCAACACAGTTGTTTATGACAGCCAGCAGATGGAGCCACAGCAGCAAGTGATTCGAGAGCAGGTGTTTCTTATGAACACTGAAGGCAATACCTTCATTGTTGATGGCGACACAACATTGCCTGTGTCTTCCCTGCAGCCTGGGCAGGAGACTTATGACAATCGCACAAAAGTGAAGGATGTTTATCAGCCGCCTCGCCAGGAGGTAATAGCTGGCACTGCAACCATACAGCCTGCAACAGAAGTCAAACCTAAACCACCAACGGTGAGGATTGTAACGAAGAAAACTGCTACACCAAAACCAGTCATAAAAAAGAAAGAAGACAGTTGTCCTCCATATGACAACGACAGGCCTGTGCCCCATGCACCGAAGCCAATTCCTGGTGTCAGTTCATTTCAGAACTCGTTCCTAAGTTTCCTTCAGGGCAGGAAACAGGAGACTCTGTCAAGTGTTACAGCTAGTCCTGTCATCAAGAAACCAATGCTGCCAAAGTACATCCCTTTACCAAAGTCAACCGTAAAGCCACCAAGTGAAACTGAGAAAACAGTATATGTGGCAGCAACACAGAAATCATCTGGTAACAGTACGAAGGCAGAATTGGCACCAGTGCCAGTCACGAAGAAGGTTGAGGCAACCGCAGCAGTTACTGGTAACCATGTGAAGGCTGTAGTTTCAATGCCCCAACCTCAGACAGTTGCCACCACGAAGTCTGGAGGAAGTTCAATAAGAGGTCGTCGACCGAAGAAGTTGGGTCATCGGCTGAGTGGTACACCAATACAACCTTCTGTCTCCGATGACGACGAATTAGCCGTTGCCGAGGAGGGTGAAGTAATTGCACGCCCTGTTGCACCCCGTATAAGGCCGATGCGGAAAGCAAAGGAGAAGGTGGTACAGAGACTGAGCAGGATGAAGACAAAGAAGAGTAGACAAAGTACAAGTGACTTATCTGATTCGGGTTCTGACGAATTTGTTTCAAACCTGAGCAATTCTGATGAGAACGCAACAGACTCAGACAGTGATCCTTCCTGGAAGCCTACTGCTCTGGGGGCAGAGACAGAGAAAAGGAAGTCGGTCTCAGACGATGAGAGTCGACCAAAACGAGGGAGACCAAAAAAACGACCGAGATTGAGCACTCCAAAGGCAGGAGCGGTCCAGGGAGGGTCGACAGCTACGGACGCCACCAAAGCTTCTGCTCTACCAGGCTTCCAGAAAGGAATGTTTGTGGTGGAGAAGTCCCAAATAGAGAAGGGAAGTGGATGGAAGACGCAGCCCATCTGGAAGGTAGACGTTAGTCGACTACTAAAGAAGTATGAGCCAATAACAATAGATGACCGCCTCGTTCATACGGCCAAGACAATGTATATGAGTTGGAACAACCAGGATGAGGCAAACTACTGCCGAGTGATGGTGAGACCAGTCGAGTCGGTTGACAGCGAGGTCGTAGAGGTCACAGAGGTCGTCCCTCCCAAGCAACCAGTGAGTGGTGACCAGCTGATGCAGCCATTTGACGTGTACATACAAATCCTGCTTAGCCAAGCCCTCGAGCCTGGTTTCCTTGCAGCTCTTCACAATGAACCAGATGAATATTATATGGGGCCACTGAAGACCATTGATGAATCGCTTGCTGAAAGCAAGACTCATATGTTAAACTTACTACACTGGACAGCCACATTCACAGAGACAGTCGAGTATTACCCCTACATACATGTTGTTCAAAGTTCAACTTTAAAAGATTACTGCCAGGCATGTCAGGATGAGACTCAGGAAGCCGTCAAGTCTGTGTTGTTATCAGGAAATGGCTACGACCGGAAAACACTGGTGACAAAGACGGAAGATTCATCATCATTCATACAGAAGACGTTCTCGGTTGGTTTGTTGACATCGCAACACGTGACGGTGTATCATTCCCTACATCACACCAAGTTCAGACTCTACCAAACTTGTGTCGCCAAGGTGAACTGGTTGAAGAGTAAGAAGGTGGAGGAACACAGCGACATCCTGGAACAGTGTCTACAAGATCGGGACTGGATACAGAAGCTGTACAAGAACTTGAAAGATCTCCTCAGACAGAGTCGCACTGTTACGCCACATAAATAGTCGTCCCGCCAGATTTTTAGTCTTACGCTATAGGTATAACACCCACATCAGAGTCACAGTCTTCGACGTAGTGGAGCGTCAGTCTTACGCCACAGGTATAACAGCCACATGAGAGTCACAGTC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48026	HOMOLOGOUS TO DROSOPHILA SQD (SQUID) PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG22416.1 global RNA-seq network