Gene detail

Detailed information of RPACG22334.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG22334.1	F-BOX ONLY PROTEIN 5 AND 43	tig00035176	92794	107171	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG22334.1

ATAACACACAACAAAACGAAGTGGAGGATTTATTGTGTGAACCTAACTACAAGGTAGACAATTTTCTATGCGACAGTAAGAAGCGGCGCAGCGGGTGCTTGAGAGGCTTTGTTCATCTGCCGAATACAACAATATTTTAAATATGAGTGGTGGCGTGTACGGAGGAGATGAAGTCGGGGCACTTGTTTTTGACATTGGCTCCTTCTCCATCCGGGCAGGCTATGCTGGAGAAGACATGCCAAAGGCAGAGTTTCCGAGCACTGTTGGCGTGGTGGAGGACATCGTTGACACTCCCATGCAGACAGATGATAATACAAACAGCAGCCAGCCAGAGAAACAGAAGACATACCACTTTGACACAGTTAACATCAAAGTACCTCGCAAGGGAAAGGAGATGATGACCTTTCTAAAGGAGGGCATGGTGAATGACTGGGACTTATTTGAGAAAGTCATGGACCACACATACAGCAAATACATCAAGTCAGAGTCGGAACTACATCCAGTTCTTATGTCAGAACCAGCGTGGAATGTGCGAACAAATCGTGAAAGGTTAACAGAGGTCATGTTTGAAAAGTACAACATTCCTGCATTCTTCCTATGCAAGAATGCCGTTCTCTCTGCATTTGCCAATGGGCGTTCAACAGGACTAGTGTTAGATAGTGGGTCAACACACACGACCGCAGTTCCTGTCTACGATGGCTACGTATTACAACAAGCTATTGTGAAGTCTCCGTTAGCTGGTGATTTTATCACAATGGAATGTCGTAAACAAATGGAGGAGATGTCGATTGAAGTAATTCCACCATACATGATTGCTAGCAAGGAGCCAGTTGCGGAGAGTGCGTCTGCGAAGTGGAAGAAGAAACCCGGCCTGTTGGAGGTGACCAAGTCATTCCACAACTACATGCTGAAGGATGTCCTACAAGACTTTGCAGCCTCTGTGCTGCAGGTGTCAGACAGTCCGTACGAGGTGGAAACTGCTGAGAGTATGCCCACAGTGCACTATGAATTCCCCAATGGCTACAATGTTGATTTTGCTGAGGAGAGACTTCGCATACCTGAGGCACTTTTTGATCCTTCTGTTATAAAGGATTTACAAGGGGCCAACTCAATGTTGAGCGTTGGACCAGTGGTCACCACAAGTGTTGGCATGTGTGATATCGACATTCGACCAAGTCTCTACAACAGTGTCATTGTGGTTGGTGGGAACACCCTTCTGAACGGCTTCACCGAGCGTCTCAACAAAGACCTCAGCACAAAGATCCCTCCCAATATGAAGTTGAAGATGATCTCTTCATCCGTGAGTGCGGAGAGGAGATTCAGTAGTTGGATTGGCGGCTCAATCCTCGCTTCACTTGGCTCATTCCACCAGATGTGGATCTCAAAGCAGGAGTATGAAGAAAGTGGTCGCAGTTGTGTGGAGAAGAAGTGTCCATGAAGTAGACCCGAGCTATTGGAGACGAACAATGCAGTTGTCTCTTGAGGTTGTTGACCATGTGGTCTATTTTTATGCAACCTCATGACACTATAGAACATTGAAGACACAAAATTCATGTCTTTATCGCATTTCACGAGGCTGTAAAACATTGAGGACACAAGGTTCATGTCTTCGTACAATCTCTTTTGAAATGGATCAAGGAGACAGATGCAGGAGTCACATTTCAGCGTAGCAAGACATGATTCGTGTAAGTGGAATGTAAAGAAAGCCACATGCGTTTCTTGTGTAGTTGTTGAATGTGATACTGGTGTCTTAACAGGTTTGTGAATGTGACATGTTGGTGTAAATGTCTTGTGTAGGTTGTGTATGTGACAAACCACGTTGATGTGTGGTCTATGTTTAACTACCACGTACAAGATGTTACCGAAACGTCGTGTGTTAATATTGGATTTCACGAACTGTAGATTGTTTATGTATTTTGTTATTAAAACAAGTATGTATATGTGCAGTGTAGTTTATCTAAGATCCTTGTATATTTATCTGTTTTATTCTATATTTTACCCAGGAATTGTAAGTAGAATTGACATTAGAAAAAAAGGATATTGTTCAGTAAATTCATTGGACATAAGATATTTGGCATGAAATTAACATGAAGCATATATATATGAATGAAAATTAAAGAAATGATCCCATCCTCGCGTGTCAATGCCAGTCAGCAGTACCCTTGCTGATCACCTTCCAAAACTCTGAATATAGGCTCAGCCCAATGAAACTACACACAATACTTTTGGTTGAGAAGCCTGTCACGCAGCAATGTCCATCTATCATGGTTCATCTGCAGCATGAAGTGGTTGGCTGAAATTGTATTGTTTGGGCAGAATTATCATTCAACTGTTTGTGTGTGATCCAATGGGTTATTATAATTTGGATTCCCGGAAGTCGTTCATCTGTCATCAACGGTAGTTTTGAAATTGGGATGGATATTTCCTCTGCTCTCGTGGTTGCTGTAATTACTACTGGTGAAGTCAGTTAGTAGTTCTACTGAACAAATTTCTGAACTTTTTGTAGGGGAACAGCCAGGGCTAGTTTTCTTGCAGCAGATAACCCT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR044064	Domain	Zinc finger ZBR-type domain	Interproscan
IPR047147	Family	F-box only protein 5/43	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15493	F-BOX ONLY PROTEIN 5 AND 43	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0007088	Biological Process	regulation of mitotic nuclear division	Interproscan
GO:0045835	Biological Process	negative regulation of meiotic nuclear division	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG22334.1 global RNA-seq network