Gene detail

Detailed information of RPACG22314.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG22314.1	SCHNURRI, ISOFORM F	tig00035173	905737	906731	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

Protein

RPACG22314.1

MPRRKPVNPQPKLKQEDEKEEGKVGRRAGENDDGEPLEKKALTETSWENGANCDQTYAVNTVIAELESEDRKTLKYDVSQGDAPEIVIKPDVIKQKTQNKVTGVVSTSVVGQSSSVMKCNQSLQALFDAAHSELENISKQGDSDVDSATRQTVMQVTVPKASDLTSALKTGQLVIIQCDTLEPDKKAAPQVIQQIVVNKESTNKLQLPAAAMSNIKLVAADKPSDHVYGSTVTEMTLGDSFSYNVNNTLKPMDGKPMCVLPRLATETIMAMQMPVVPSVGRKRKHPQKPGKHICPYCSRGCAKPSVLQKHIRAHTGERPYPCTPCGFSFKTKSNLYKHCNSRAHAIKVGQLTGASEKANDSAPKEAKGAMILDGPEEEMIPESAVVEERIESIVPKMVQGVQQKVSGVKSGVQQTVSGAGGDSQIIVVQPECAVVETMTSRSSGASAKEVVSDCQFYDVTFVTSDGTLQTLSLPAQLAMPVVQSSQVTTTAATTTSQVIIIRNTDEKPAVNINAQVEMVASPVTTVAVSPPSFSDYKLYDTAAVKSNIKITQLTRQMLCSSQVQLTPTVLPSGDPPAASSTSQTIPRAGLTPEMLNERITQLISSNAAIVDVPMADAPRPKRLSRHNSMFEPMLLASPQVTIATAPILLNASTSMLPFETARKTTKLPQAKSDGGLFLGQVEPADQPPGDGENPPGGTSGPGLTFTTSVATNEIKIQIRLPKPATTTGTTVSVVSVTGAGQVHRVTTPGMAVERSVIKDLLLKGRSLSLPSNVELVPPGGTGTAGDTASGDTASGDTAKSMMCTSCLQTFCNASVLDEHNKQSCSVGGAAKPGQVIVVTAPKSKLACPGVVVTTSVATSSVVTPSIATATKTHTVVMTTAMTGGSTMLLEVVDPTVPPKRGRPKGSRNSYNSIPRKPSPVPDPSLFPTYPSLAPRPPNERQADSVTLKPPGRPPRPVLRLKIPPPHGFTTNHVTKGSQSAGVSPGSLSDLPTTPITSFAKLKLKGKILMKRSMSVERMLLQDKSSSSAGSAGSVGSAMPLSCVQSAAMRQKFLPSLRRCESLDESVPLAKRARLQEHGDGGRLDSLLYKMLMKGLTSSTPAGSTSSFMLSPISMATKSTTPSTTEGNAPDVIIIDDGPTEDNPHTHSSSINGATLVVFTVPPTNVGMTVAARLAAANVAPFARGISADVMLHFPSVESLPDNLVSGIPGLLLRVVTGTTDRRHSLARPDADGAVQDRTRDSNTKAESEQCPIKISDSVKTAVTETNIKAETQELAIECSVIERTGAADKAGAMQLLLSHSYPILCNRTHVTFCTVLKPQPAYIRQLTSDLSMYSNWSTTVTDASESDLTSRMMLSLYETRRRTDVPTYANSSHSVSVLTHSSYWNGISPPPPAPPIVTARHSVRSSSELKLKSSNEPDLISVALNEVEVTCENILSETVPSGSRIVRLLHESVASPVDQPKRVVIFSGGYKTSEEYVYVRGRGRGHYVCEQCGIRCKKPSMLKKHIRTHTNLRPYHCYYCSFSFKTKGNLTKHMKSKAHHKKCLELGIFPIPTIVDETHIDSSTLDQQNQVAEESRILGLSTDDTDGSHATDDNDGDDDDNGDDDDDDDDDDDTESEADMVIVDEADSSRPDVQYVAMVPDCSTEATFLKMKPGSRVELDRTYGISGSTKYMCQVKGQPPRASIDKEIAASLLDLSKGTDEVCKMTATTAEYGLGFAHSTSGQRGLVGQMTTVTWNSGHSPPLINPQGGASASAECYLPPAGGATEGVQTTCVGEVRGHVSPTTQIWLDDMRASWERSASHQPVAEHDCNIGARFVPPLPLGGIPVKMSIQAADITNVQQPVMSSVKGGPIIGHFIKQDVSLASILSLTMMDTVSSAMALPVTVTRTTAVMSQTYCVTSVIGGASMSTAACDSSSGKSPASVDSVSQKLQHAWPDDVEKATDSAIVMSDSITTVATQSVATTTTAIPAVAIGTVTTAITQPTQTIPFHLLGLHGLPAVVPSEIPLGVLLVTTASTTPLTSSSTTVVQFVTGDNRAPYEIIPIPGRVNDNSASLVDGKYVCHVCGKTFPKQHQLTLHKNIHYFERPFKCTECSLSFRTKGHLEKHHKSEGHQLKVSERSQPTLVAVTGAGSTENPRPFRCDDCNVAFRIHGHLAKHLRSKLHIMMLEKLGKVPPGSYALIEKNGSFKEIVATESESSLRCIRQLLKNLEAGVNTSHGEVNDNSETHIPVEISQSAVPEVGQTDCVSERAGNSFAYSRPGEFEKVTNASNDRVTVERKAELIYFGGFVPETEAVSQLAGEGTDGQTGRDAEGSDEDDGTGSSITTTASEPVEHQCSLCSSAFSDVSSLKRHLVTHTELRPHVCEYCDAGFTTAQSLTFHLRTHTQERPYLCGKCGDTFAHLSQLQQHSLIHTSQSLGGTASHSPGSTTSRSPDDTTSQAPSGTTSPSIDGAISQPPGGATESVAAVVTTSVCQQVAIAMVRVETVLSPSGGESVKEVPADDTGDVRGQRDVSDSPGPAVDSRMTNCVGAVTSHTTESTASQLANSFAVTSLHGNSGTVTNSNTATVDAHECPASIAMTAPGGGMASETTTSLERPSENHMSTTPSNPALKRRCLQRQCAMTGEDITVTTVVTSSSDGIKVSCVTAAAIVATPIDDTERCSSSQHSNN

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR051969	Family	Zinc-finger DNA-binding transcription regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45944	SCHNURRI, ISOFORM F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG22314.1 global RNA-seq network