Gene detail

Detailed information of RPACG22203.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG22203.1	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	tig00035166	101916	111024	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG22203.1

CTGTGCTTTGTGCCCTCTAGTCTAGACTTTAAGACACAGCTAAGCTAGTTTTAGGGGCGTATAGATTATACGTCTACGGGAAGCGACAGAGTCGTGTGTGTTATGCTCTTTATAAATGTAAGGGATTATCCAATGTAAGATCAGATAAAATAAGATCAGTTTATTTTAGGAATTTAGACCCATTCCTTAATAAAAGTTCATGTAACGTTGGACTTAGTCTTATATCACGTAGTCTTTCAATTTTGTGATAATACACATTCTTTAGTTAAGCTGCAGCTATATCTTTAGATATTGCCATAGCGTATGCTATGTCTAAACTACGAACCTAATTCCTAGCGTAAAATTAATTAATTGGTCAGTTTTATTGCTTCTTCAGTGTCACTGACTGTCTCATCATCATAGTCTTTCTGTAGAGCTCTTTTTCAGACAAGTGCATGAACGTGTGAGATTCATAGTAGATGGACCAAAACATTACTGGTTCAAAACATGCTCCATAAATAGCTCAGGTGGCAGCCTGCAGAATGTCGGCAAGTGTGGCGAATGAGGATGGACTGACAGCCGGACTGGATGAGACTCAGATCAAACTCCTGCAGGAAGAGTGCATTCTTATTGACAATGACGACAACAACATTGGCTCGGCATCAAAGAAGACGTGTCATCTTTTGGAAAATATAAACAAAGGTATGTTGCACCGAGCCTTCAGTGTGTTTCTTTTCAACCCTGAGGGAGAACTTCTGCTGCAACAGAGGTCAGATGCAAAGATAACATACCCAGCCCACTGGACGAACACATGCTGCAGTCATCCGTTAAACATCGAGCCAGAACTGGAAGAATGTGACGCACTGGGAGTGCGCAGGGCAGCCCGGAGGAAACTGGAACATGAACTGGGGATCAAACCAGAACAGGTTCCCTTGGATGACTTCCACTACTTGACACGGATACACTACAAGTCTGAGAATGTTCCTGCAGATGGCAAATGGGGTGAACATGAAGTTGACTACATTTTGTTCATACAGCGCAATGTCACCGTGGTTCCCAACGAGAATGAGGTGAAAGCTCACCACTACGTCAGTCGTGAACAACTCAAAGAAATCATGGCGAGCTCACAGAAGAATGGAACACTTATTACGCCGTGGTTCCGTCTGATTGTGGAAACATTCCTTGACAAGTGGTGGGATAATCTAGAAGATTTGAAATCACAAACAGACCATTCACGTGTACACAGGATGAGCTAACTGAGTAGCACCAGTGAATCCATTATGGTGTAGATTAATGGTGTCGTCATTTTTAATTCAATCAGTATCTATGCCAGTCCAAGTAGCTGTACATCTGTACATCTCTTATGTGTACAGGTATTTCACAATTAGATACAGCGTGTAATGCCATAGTTTTGTCTGCTATCTGTCGTAGTAAATATCAATGATATGCTAAGTTTTTTTATGCTGAGTAATGCAGGTTTTGATGTGGATGTTTTATTACCTGTTTGGCAGTATGGCAGTGTAAATGGTCTTCATTCAAAGTGAAGAAAGTTTAAATTTGCTATGAGTATTGTTATGTTGCATATTGATGGACAAACAGTAATGAAACATTCTAGTCCATTTTTATAAGTTTGTTGTGCACTGAACACATCAAAGCGTACAATGTCCTTGCTGAGTACACTGTTTTCTGTGTTACCATGCTTGCATATTTATGTGCATTGCTATTCTTTGTGTACCAGCCTATCTAGCCATTGTTTGATGTTATTAGGAAAATATGATTATAGTTATTTACTTTTTCACAAATAATAATGTATGTAGAAGTACTATCACGTCGTATTGTAAAATAAAAGAGCTACACACACAGTCAAAATATACAGTATGTCCTAGTATTATGTGTCCATTGATGAATCCAGTGAGTCACTGTTTTCATGTTGCAGCTATAATTATGTGAACTCCACAGCCTCACTAACATTGTTTAGATAGGTTGTGAATGTGCTAATTCAGTAGTTTAGCAGTGAAGCCACAAATTCAACATTGACCACTTGAGGTTTTTTTTATAAAGATAAATTAGTTAGGGCTACAATTTCAACAAAGTGGAATGTCTGAAAGCATCATGTTCTTAGCATCCATTTTGTGATGGCTCTGTGGACCTTTTGTTAGGTCACTGGTCATGTGAAGGGTTAGTTCAGATTTCTATTGCAATGTAGTATTGCATGGTCATCAATTTATCATTATTAATATTATGCAGAATGTATTTAGAAGATGTTATAAATACATGTGGATACAACTCTATTTTTGAAGTCGTCTAATAAAATTTTACTCTATCGACAATAATGTGTTGTTGGTAATAAAAGAGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF02494	HYR	HYR domain	Domain	Interproscan
PF07699	Ephrin_rec_like	Tyrosine-protein kinase ephrin type A/B receptor-like	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436	Domain	Sushi/SCR/CCP domain	Interproscan
IPR003410	Domain	HYR domain	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR011641	Domain	Tyrosine-protein kinase ephrin type A/B receptor-like	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR035976	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR050350	Family	Complement & Cell Adhesion Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19325	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
-	-	-	-

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG22203.1 global RNA-seq network