Gene detail

Detailed information of RPACG21864.1 in Riftia pachyptila Gene info

Gene ID	Annotation	Contig	Start	End	Strand
RPACG21864.1	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	tig00035143	534750	536826	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

RPACG21864.1

CACAATTGTGACGTACCACTATGCAAGTTTAAATGTTGTAAAGCGATGACGAGATACTACTAAATTGATGTAAAATAATGTTAAAATAAAAAATATAAATTATTTGAAAGAGTAAAAAACGTATACCAGATCTGCTTAAATACATTAATTAAACTATTCATTAAGTAAATAACGTAAATAAATAAAATAAATGAAGCAAAGACTAATTTGACAACAAGATGTGTACTGGTTATACTTTGATTTGTCTACAATACATTGTCAACCAGTGTATGTAACAAATCTAAATTTTCTATGAGGTGTTAATATGATTTTGAGTTATTTTGAAGAAAAAGATGAACTTGACATTAAACATAAACGCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAATGACGATTTAGAAACATTTTCAGGGGCACGAAAGTAACCTAAGATGCAAATGCTGTAATTCGGGTGCCGTGTTTTATGGTTATGTCTTTAGTGAGCGTTTCCGCAATCTTCGACGGCGTTGTGACTTTGTAGCCGCGAACACGAATAGCAGAACAGTGTTCTCCTCGGCGTGAATTAGCCACTTCAATCTTCCTCAATGTCGCCTCTAATAACAGTCGGCCGTGTACAGGATCACCTTTCTTCACTCCCTTCACTATCGCTGCGCGTGTTTGTCGATTCAAAACAGCGGCACCACTGTTGTGTTTGATTTGCAATAGCTCTGTCCATCGATACCACTGTCAACAGTTGGCGGGAAAATCTTGAGGTTGGATGAGAATTGACGGTGGTGCAGCAAATATAGAAAAATACACGGGAGAATTACAGAGATAAGTATTGACATTCATATATATTATTCATAAACTAACCATTGGTACAAATTGAGAACTTGAGGTGGAAAACTTTAGTAAGATAAACTGTAATTGCAATAGTTATTCGCAGACATTGTCCGAAGCTTAGGTGGGCGATAGTCGGGAGAAATCTAGTCTGTTTATGTAGCTAGTGTCCTGCCTATTCGCTAGGTCGCGGTACTAGCTAAATAAATTAATCAAACGTAAAAGTTTTGCAGTCAAAAGTCTTTTTAAAGACTACGTAGAAAATTTTAAAACCTCGATTATATAATAACCAAACTTACAATAGTATTATAAGCTAGGACCTAGCATGGCGCCGTGCAAACGTAAAGTGAAGGCAATGCGCCATTTAGTTTGTGTTGCTTGTAGCAGCATTATTGATTTTGAGTTGTGCGGCACAGTAAAGACGTGGGCGGAGGCTAAGGAGGCAGATTTTGAATGTTGGAGTTGTAGGCAGGTAAAGCAGCTAAAGAAGGATATAGATGATTTGAAGGAAATGCTAGGAGCCCAGAAGGGAAACGAAGTAGCGAAATCAGTTAGGACAGCGGATAAAGTGACAACAACAACATCAGGAAATAAAAAGACAGGAGGAAAAAGATTGGGAGGACAATTTATGGGTATGGAAGATTTGGGACTCCAGAAGGAAAGGAATGAGGTAGAAATGAACTTGTTAGGAGAGAAGACAGCGGTGAGAGGGACAGTAGACAAGGAAACCGAAGGAAAGTTGACAGGACGAAAGGAAGTGATAAACAAGGTACCAAGGGAGAAGTCGACAGCAAATTTTGAGACGACAAAAATAACGAAGAAATACCAGACAAAGGGAAAAGACTCCCATGAAACAGAGACAGGTCTGACGCAGAGAAGGAGCTATTCAAACGCAGTGAAAGAGGGAGCTATTAGAACAGGCCGAGTTTTCATGGGGGATTCAATTATTAGGAAGACAGACAAGATATTAAACCAGGGAGAAGACATAGTGGTATGCCTACCAGGGGCCAAGATAGAACATGTGACTGAAAGAGTGGGAAATGTAATGGGACATGGCAACGGAGGGTCTATACTAGTTCACGTAGGGACAAACAATGCAGACAGGGAAGGGACGATATGAATAACACAGAAATACAGAGAGTTAGTCAGGAAGTTAAAGCAGACCAGGGCTAGTCAAATTACTATCTCAGGAATCTTGCCTATAATGGGAGGCAGACAACAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00989	PAS	PAS fold	Domain	Interproscan
PF08447	PAS_3	PAS fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000014	Domain	PAS domain	Interproscan
IPR001610	Repeat	PAC motif	Interproscan
IPR013655	Domain	PAS fold-3	Interproscan
IPR013767	Domain	PAS fold	Interproscan
IPR035965	Homologous_superfamily	PAS domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23043	HYPOXIA-INDUCIBLE FACTOR 1 ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for RPACG21864.1 global RNA-seq network